Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Arabidopsis thaliana

CDS Sequence

CDS ID

AT3G49240.1
CDS Infomation

| Pentatricopeptide repeat (PPR) superfamily protein | Chr3:18256086-18257975 FORWARD LENGTH=1890 | 201606
Sequence

ATGTCGATTTCTAAAGCCGCCTTTTTAAACCACCTTCAAACACTATCAAGATCCTACCGC
CACCGTGTTCTGCCGCAGCCATTTCTCGCCGTCCGATACATGTCATTCGCGACTCAGGAA
GAAGCCGCCGCTGAACGTCGCCGTCGTAAGCGTCGTCTTCGTATGGAGCCACCGGTTAAT
TCATTCAACAGATCTCAGCAACAACAATCTCAAATCCCTCGACCAATTCAAAACCCTAAT
ATCCCGAAATTACCTGAATCTGTCTCTGCTCTCGTTGGGAAACGTCTCGATCTTCATAAT
CATATCCTGAAATTGATCCGAGAGAATGATTTAGAAGAAGCTGCTCTGTACACTCGTCAC
TCTGTGTATTCGAATTGCCGTCCCACGATTTTCACTGTGAATACTGTTTTAGCGGCGCAG
CTTCGACAAGCTAAGTATGGAGCGCTTCTGCAATTGCATGGATTCATTAATCAAGCTGGT
ATTGCACCTAATATCATCACATACAATTTGATATTCCAGGCTTATCTTGATGTAAGGAAA
CCTGAAATTGCGTTGGAGCATTACAAGTTGTTTATAGATAATGCTCCATTGAATCCTTCT
ATTGCTACTTTTAGGATTTTAGTTAAGGGTTTAGTTAGTAATGACAATCTTGAGAAAGCA
ATGGAGATTAAAGAGGATATGGCTGTTAAAGGTTTTGTGGTGGATCCTGTTGTTTATAGT
TATCTAATGATGGGGTGTGTGAAGAATTCTGATGCTGATGGTGTGTTAAAGCTTTATCAG
GAGTTAAAGGAGAAGCTTGGTGGGTTTGTTGATGATGGTGTGGTTTATGGGCAATTGATG
AAGGGGTATTTCATGAAGGAGATGGAGAAAGAGGCTATGGAGTGTTATGAGGAAGCTGTT
GGAGAGAATTCAAAGGTTAGGATGAGTGCTATGGCTTATAATTATGTGCTGGAGGCTTTG
AGTGAGAATGGGAAGTTTGATGAGGCTTTGAAGTTGTTTGATGCGGTGAAAAAGGAACAT
AATCCACCGAGGCATTTGGCTGTAAATTTGGGAACTTTTAATGTGATGGTTAATGGGTAC
TGTGCTGGAGGAAAGTTTGAGGAAGCTATGGAGGTTTTTAGGCAAATGGGTGATTTTAAG
TGTAGTCCTGATACTTTATCGTTCAACAATCTGATGAATCAGCTGTGTGACAACGAGTTG
TTGGCTGAGGCTGAGAAGCTTTATGGTGAAATGGAAGAGAAAAATGTGAAGCCTGATGAG
TACACATATGGTTTGTTAATGGATACTTGTTTCAAGGAAGGTAAGATAGATGAAGGAGCT
GCGTATTACAAAACAATGGTTGAGTCTAATCTAAGACCAAATTTGGCTGTGTATAACCGT
TTGCAAGATCAGTTGATCAAAGCTGGGAAACTCGACGATGCAAAATCTTTCTTCGATATG
ATGGTGAGCAAACTCAAGATGGACGATGAGGCTTACAAATTCATCATGAGGGCGTTAAGT
GAAGCTGGTAGACTCGACGAGATGCTCAAGATTGTGGATGAGATGCTGGATGATGACACG
GTAAGAGTGAGTGAGGAACTGCAAGAGTTTGTGAAAGAAGAACTGAGGAAAGGAGGAAGA
GAGGGAGATCTGGAGAAACTAATGGAAGAGAAAGAGAGATTGAAAGCAGAGGCAAAGGCG
AAAGAGTTAGCAGATGCAGAAGAGAAGAAGAAGGCTCAAAGTATTAACATAGCTGCATTA
ATTCCTCCAAAAGCAGTGGAAGAAAAGAAAGAAACCGCAAAACTGCTTTGGGAAAACGAA
GCTGGTGGTGTTGAAGAAGCCGATGTGGTGGAGATGGCTAAAGGAGTAGAAGCAGGTGGA
TCCAATGGTCAGGATCCACCGTCCTGCTGA

Peptide Sequence

PEP ID

AT3G49240.1
PEP Infomation

| Pentatricopeptide repeat (PPR) superfamily protein | Chr3:18256086-18257975 FORWARD LENGTH=629 | 201606
Sequence

MSISKAAFLNHLQTLSRSYRHRVLPQPFLAVRYMSFATQEEAAAERRRRKRRLRMEPPVN
SFNRSQQQQSQIPRPIQNPNIPKLPESVSALVGKRLDLHNHILKLIRENDLEEAALYTRH
SVYSNCRPTIFTVNTVLAAQLRQAKYGALLQLHGFINQAGIAPNIITYNLIFQAYLDVRK
PEIALEHYKLFIDNAPLNPSIATFRILVKGLVSNDNLEKAMEIKEDMAVKGFVVDPVVYS
YLMMGCVKNSDADGVLKLYQELKEKLGGFVDDGVVYGQLMKGYFMKEMEKEAMECYEEAV
GENSKVRMSAMAYNYVLEALSENGKFDEALKLFDAVKKEHNPPRHLAVNLGTFNVMVNGY
CAGGKFEEAMEVFRQMGDFKCSPDTLSFNNLMNQLCDNELLAEAEKLYGEMEEKNVKPDE
YTYGLLMDTCFKEGKIDEGAAYYKTMVESNLRPNLAVYNRLQDQLIKAGKLDDAKSFFDM
MVSKLKMDDEAYKFIMRALSEAGRLDEMLKIVDEMLDDDTVRVSEELQEFVKEELRKGGR
EGDLEKLMEEKERLKAEAKAKELADAEEKKKAQSINIAALIPPKAVEEKKETAKLLWENE
AGGVEEADVVEMAKGVEAGGSNGQDPPSC

Transcript Sequence

Transcript ID

AT3G49240.1
Transcript Infomation

| Pentatricopeptide repeat (PPR) superfamily protein | Chr3:18255961-18258203 FORWARD LENGTH=2243 | 201606
Sequence

AAACAATCCCTAAACCTCATCATCATCATCTCCAAACTCCTAAAACCCTAACAAGAACCC
TTATCTCTCTCATTTCCTCTGAAAGGAATCATTTTTCCACTCAGAAAATCTCAAACATTT
CAACCATGTCGATTTCTAAAGCCGCCTTTTTAAACCACCTTCAAACACTATCAAGATCCT
ACCGCCACCGTGTTCTGCCGCAGCCATTTCTCGCCGTCCGATACATGTCATTCGCGACTC
AGGAAGAAGCCGCCGCTGAACGTCGCCGTCGTAAGCGTCGTCTTCGTATGGAGCCACCGG
TTAATTCATTCAACAGATCTCAGCAACAACAATCTCAAATCCCTCGACCAATTCAAAACC
CTAATATCCCGAAATTACCTGAATCTGTCTCTGCTCTCGTTGGGAAACGTCTCGATCTTC
ATAATCATATCCTGAAATTGATCCGAGAGAATGATTTAGAAGAAGCTGCTCTGTACACTC
GTCACTCTGTGTATTCGAATTGCCGTCCCACGATTTTCACTGTGAATACTGTTTTAGCGG
CGCAGCTTCGACAAGCTAAGTATGGAGCGCTTCTGCAATTGCATGGATTCATTAATCAAG
CTGGTATTGCACCTAATATCATCACATACAATTTGATATTCCAGGCTTATCTTGATGTAA
GGAAACCTGAAATTGCGTTGGAGCATTACAAGTTGTTTATAGATAATGCTCCATTGAATC
CTTCTATTGCTACTTTTAGGATTTTAGTTAAGGGTTTAGTTAGTAATGACAATCTTGAGA
AAGCAATGGAGATTAAAGAGGATATGGCTGTTAAAGGTTTTGTGGTGGATCCTGTTGTTT
ATAGTTATCTAATGATGGGGTGTGTGAAGAATTCTGATGCTGATGGTGTGTTAAAGCTTT
ATCAGGAGTTAAAGGAGAAGCTTGGTGGGTTTGTTGATGATGGTGTGGTTTATGGGCAAT
TGATGAAGGGGTATTTCATGAAGGAGATGGAGAAAGAGGCTATGGAGTGTTATGAGGAAG
CTGTTGGAGAGAATTCAAAGGTTAGGATGAGTGCTATGGCTTATAATTATGTGCTGGAGG
CTTTGAGTGAGAATGGGAAGTTTGATGAGGCTTTGAAGTTGTTTGATGCGGTGAAAAAGG
AACATAATCCACCGAGGCATTTGGCTGTAAATTTGGGAACTTTTAATGTGATGGTTAATG
GGTACTGTGCTGGAGGAAAGTTTGAGGAAGCTATGGAGGTTTTTAGGCAAATGGGTGATT
TTAAGTGTAGTCCTGATACTTTATCGTTCAACAATCTGATGAATCAGCTGTGTGACAACG
AGTTGTTGGCTGAGGCTGAGAAGCTTTATGGTGAAATGGAAGAGAAAAATGTGAAGCCTG
ATGAGTACACATATGGTTTGTTAATGGATACTTGTTTCAAGGAAGGTAAGATAGATGAAG
GAGCTGCGTATTACAAAACAATGGTTGAGTCTAATCTAAGACCAAATTTGGCTGTGTATA
ACCGTTTGCAAGATCAGTTGATCAAAGCTGGGAAACTCGACGATGCAAAATCTTTCTTCG
ATATGATGGTGAGCAAACTCAAGATGGACGATGAGGCTTACAAATTCATCATGAGGGCGT
TAAGTGAAGCTGGTAGACTCGACGAGATGCTCAAGATTGTGGATGAGATGCTGGATGATG
ACACGGTAAGAGTGAGTGAGGAACTGCAAGAGTTTGTGAAAGAAGAACTGAGGAAAGGAG
GAAGAGAGGGAGATCTGGAGAAACTAATGGAAGAGAAAGAGAGATTGAAAGCAGAGGCAA
AGGCGAAAGAGTTAGCAGATGCAGAAGAGAAGAAGAAGGCTCAAAGTATTAACATAGCTG
CATTAATTCCTCCAAAAGCAGTGGAAGAAAAGAAAGAAACCGCAAAACTGCTTTGGGAAA
ACGAAGCTGGTGGTGTTGAAGAAGCCGATGTGGTGGAGATGGCTAAAGGAGTAGAAGCAG
GTGGATCCAATGGTCAGGATCCACCGTCCTGCTGATCTTATTTTTTTCCTTGAATTCATT
AGACTCTAGTTATCTTCTTATCATTCAACTTTTATGTAATTAGGGATTTGTTTGGGACAA
TAAGCTATGATTAATCTTTTGCTATAATGCAGGTGTTTGCAAAATCTTTTTTCCATGTTT
GCTTTTGATTTCAAATTAACATGCTATGTAGAACATTTGTTTTAGTGGATGGTCTATGTA
ATCATTTCTTTATTACTCAATTT