Gene sequences

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Trait-Related Loci

Arabidopsis thaliana

CDS Sequence

CDS ID	AT2G39260.1
CDS Infomation	\| regulator of nonsense transcripts UPF2 \| Chr2:16392288-16399588 REVERSE LENGTH=3546 \| 201606
Sequence	ATGGATCATCCAGAAGATGAATCCCACAGCGAGAAACAAGACGACGAGGAAGCTCTTGCT CGTCTTGAAGAGATTAAGAAGTCAATTGAAGCTAAACTGACTCTTCGTCAAAACAATCTC AATCCTGAACGACCTGATTCAGCATATCTTAGGACTCTAGATTCTAGTATCAAGCGGAAT ACAGCAGTTATTAAGAAGTTAAAGCAGATCAATGAAGAGCAGCGAGAAGGGTTGATGGAT GATCTGCGAGGTGTTAACCTTAGCAAATTCGTTAGTGAAGCTGTTACTGCCATTTGTGAG GCTAAGCTCAAAAGCTCAGATATACAAGCAGCTGTTCAGATTTGCTCGCTACTTCATCAG AGGTATAAAGAATTTTCTGCCAGTCTAACACAAGGGCTCTTGAAAGTCTTCTTTCCTGGA AAATCTGCCGAAGATTTAGAAGCTGATAAAAACTCAAAGGCCATGAAAAAGCGCAGTACC CTAAAACTTCTTCTGGAGCTCTACTATGTTGGAGTAATAGAAGATAGTAACATCTTTATC AATATTATTAAGGATCTTACCAGTGTTGAACAACTGAAAGACAGAGATACGACCCAAACA AATCTGACACTTCTCACCAGTTTTGCTCGGCAAGGAAGAATTTTTCTGGGGCTTCCTATC TCTGGACAAGACGAAGATTTTTTCAAGGGTCTCGACGTCACTGCAGATCAGAAAAAGAGT TTTAAGAAAGCTTTCAACACATATTATGATGCTCTTGCAGATCTCCTTCAGTCTGAGCAC AAGTTACTTCTCCAAATGGAGAAAGAAAATGCAAAGCTGGTAAATGCTAAAGGAGAGCTT AGTGAAGACAGTGCATCTTCTTATGAAAAGCTGAGGAAATCATACGACCATCTCTATCGA AATATCTCATCTTTGGCCGAAGCACTTGATATGCAACCTCCTGTTATGCCAGAGGATGGT ACAACTAGGCTCACAGCAGGGGACGAAGCTTCACCCTCTGGTACTGTAAAAGATACATCT GTCCCGGAACCTATTTGGGACGACGAAGACACCAAGACATTTTACGAGTGCTTGCCTGAT CTGAGGGCATTTGTTCCAGCAGTATTGTTGGGAGAAGCAGAGCCTAAATCAAATGAGCAA TCTGCTAAGGCAAAAGAGAAACTCTCTGAGTCTAGCTCTGAAGTTGTTGAAAATCAACAA ACAACCGAAGATACAACAGAGGTTTCTGCTGATTCTGCTAGTATGGATGATCGATCAAAT GCTGAGCAGCCAAAAGAGAAGGAAGAAGTAGAAAAGGAAAAGGCTAAGGATACTAAGAAG GAAAAAGGAAAAGAGAAGGATAGTGAGAAAAAGATGGAACATGAGAAGGAGAAAGGTAAG AGCCTTGACGTGGCAAACTTCGAAAGATTGTTACAGCGACTTCCGGGTTGTGTTAGCCGG GATCTTATTGACCAGTTAACGGTGGAATATTGTTATTTAAATTCCAAGACAAACAGAAAA AAACTTGTCAAAGCGTTATTTAATGTCCCTAGGACATCTCTGGAGTTGCTAGCATACTAT TCGCGTATGGTTGCAACACTAGCATCGTGCATGAAGGACATCCCGTCTATGCTTGTGCAG ATGTTGGAAGACGAGTTTAATTCTCTGGTCCATAAAAAGGACCAAATGAATATTGAAACA AAAATCCGAAACATCAGATTTATTGGAGAACTCTGCAAGTTTAAAATTGTACCTGCTGGT CTTGTATTCAGTTGTTTGAAGGCTTGCTTAGATGAATTTACTCACCATAACATTGATGTT GCTTGCAATCTTCTGGAGACATGTGGCCGTTTCCTTTATCGGTCTCCTGAAACCACACTC AGGATGACAAATATGCTGGACATATTGATGCGCCTGAAAAATGTCAAGAATTTAGATCCT CGTCAAAGCACTCTTGTGGAAAATGCCTACTACTTGTGTAAACCTCCTGAAAGATCAGCA AGAATTTCTAAAGTTCGTCCACCATTGCATCAGTATGTTCGAAAATTGCTATTCTCTGAT CTTGATAAAGATTCCATTGCAAACGTACTGAAGCAACTGCGGAAGCTGCCATGGAGTGAA TGTGAGCAATACATCTTAAAGTGCTTTATGAAGGTTCACAAGGGAAAGTATGGTCAGATT CACTTAATTGCTTCCTTGACTTCTGGTTTGAGCCGCCATCATGATGAGTTTGTGGTGGCT GTTGTTGATGAGGTACTGGAGGAGATAAGGGTTGGGCTTGAGTTGAATGAATATGGGGCA CAACAGAAGCGGCTAGCCCATATGAGATTCTTAGGGGAGCTGTACAACTATGAGCACGTA GATTCATCTGTGATATTCGAGACACTTTATTTAACTCTTTTATATGGTCATGATACTTCA GAGCAAGAGGTGCTGGATCCACCAGAAGATTTTTTCCGTGTCAGGATGGTTATCATTCTT CTGGAAACCTGTGGGCACTACTTTGATCGAGGTTCTTCAAAGAAAAGGCTTGATCAATTT TTAATACACTTCCAGAGATACATCCTGAGCAAGGGCCACCTTCCACTGGATATTGAATTT GACTTGCAGGATCTATTTGCCAATTTGAGACCTAATATGACTCGTTACTCAACCATTGAT GAGGTCAATGCCGCTATACTTCAGCTGGAAGAGCGTGAACATGCTTCTTCAGGAGACAAA GTCAGTATAGAAAGACACTCAGATACAAAGCCTTCAAACAAGTCGTCTTCTGATGTTATC TCTTCTAACGGGAAAAGTACTGCCAAAGATATTAGAGAGAATGGAGAAGCTCACGGAGAA GAAAGCGACAGCGATTCTGGTAGTGGCTCCGTGGTTCGTGATGGACAGAACGAAGAGTTG GATGATGGAAATCATGAGCGGGGATCTGAGAGTGGTGATGGGGATGATTATGATGATGGC GATGGACCTGGATCTGATGATGATAAATTTCGTGTAAGGCAAAAGGTGGTAACCGTAGAT CTTGAGGAACAAGCGGACTTCGATCAAGAACTGAAGGCCTTACTTCAGGAGAGCATGGAG CAAAGGAAGCTAGAATTACGAGGTAGACCGGCATTGAACATGACAATACCGATGAGTGTT TTTGAAGGATCTGGAAAAGATCATCATCATTTTGGGCGGGTAGTAGGTGAAAACGGTGAA GAAGTGTTGGATGAAGAGAATGGAGAGCAAAGAGAGGTTCAAGTGAAGGTCCTAGTGAAG AGAGGAAACAAACAACAAACAAGGCAAATGCTAATCCCGAGTGATTGTGCTCTAGTGCAG AGCACAAAACAGAAAGAAGCTGCAGAATTGGAAGAGAAACAAGACATAAAGAGGTTAGTA CTCGAGTACAATGAGAGGGATGAAGAGGAAGCAAATGGGTTAGGAACACAGATATTGAAT TGGACTTCTGGAGGAAGCAGAGGATCCACTCGAACCGGGGAAGGCAGTGGGAAGAGTGGT GGGTCTCGTCACCGGTTTTATTATCATCAAGGAGGTGGTGGTTCGTATCATGCCCGACGA AAGTAA

Peptide Sequence

PEP ID	AT2G39260.1
PEP Infomation	\| regulator of nonsense transcripts UPF2 \| Chr2:16392288-16399588 REVERSE LENGTH=1181 \| 201606
Sequence	MDHPEDESHSEKQDDEEALARLEEIKKSIEAKLTLRQNNLNPERPDSAYLRTLDSSIKRN TAVIKKLKQINEEQREGLMDDLRGVNLSKFVSEAVTAICEAKLKSSDIQAAVQICSLLHQ RYKEFSASLTQGLLKVFFPGKSAEDLEADKNSKAMKKRSTLKLLLELYYVGVIEDSNIFI NIIKDLTSVEQLKDRDTTQTNLTLLTSFARQGRIFLGLPISGQDEDFFKGLDVTADQKKS FKKAFNTYYDALADLLQSEHKLLLQMEKENAKLVNAKGELSEDSASSYEKLRKSYDHLYR NISSLAEALDMQPPVMPEDGTTRLTAGDEASPSGTVKDTSVPEPIWDDEDTKTFYECLPD LRAFVPAVLLGEAEPKSNEQSAKAKEKLSESSSEVVENQQTTEDTTEVSADSASMDDRSN AEQPKEKEEVEKEKAKDTKKEKGKEKDSEKKMEHEKEKGKSLDVANFERLLQRLPGCVSR DLIDQLTVEYCYLNSKTNRKKLVKALFNVPRTSLELLAYYSRMVATLASCMKDIPSMLVQ MLEDEFNSLVHKKDQMNIETKIRNIRFIGELCKFKIVPAGLVFSCLKACLDEFTHHNIDV ACNLLETCGRFLYRSPETTLRMTNMLDILMRLKNVKNLDPRQSTLVENAYYLCKPPERSA RISKVRPPLHQYVRKLLFSDLDKDSIANVLKQLRKLPWSECEQYILKCFMKVHKGKYGQI HLIASLTSGLSRHHDEFVVAVVDEVLEEIRVGLELNEYGAQQKRLAHMRFLGELYNYEHV DSSVIFETLYLTLLYGHDTSEQEVLDPPEDFFRVRMVIILLETCGHYFDRGSSKKRLDQF LIHFQRYILSKGHLPLDIEFDLQDLFANLRPNMTRYSTIDEVNAAILQLEEREHASSGDK VSIERHSDTKPSNKSSSDVISSNGKSTAKDIRENGEAHGEESDSDSGSGSVVRDGQNEEL DDGNHERGSESGDGDDYDDGDGPGSDDDKFRVRQKVVTVDLEEQADFDQELKALLQESME QRKLELRGRPALNMTIPMSVFEGSGKDHHHFGRVVGENGEEVLDEENGEQREVQVKVLVK RGNKQQTRQMLIPSDCALVQSTKQKEAAELEEKQDIKRLVLEYNERDEEEANGLGTQILN WTSGGSRGSTRTGEGSGKSGGSRHRFYYHQGGGGSYHARRK

Transcript Sequence

Transcript ID	AT2G39260.1
Transcript Infomation	\| regulator of nonsense transcripts UPF2 \| Chr2:16391924-16399812 REVERSE LENGTH=4134 \| 201606
Sequence	GGTAATTATTTTGGTAACTGCTTAGTCCTGCCGGGTAAAACCCGTTGGTATTGGGTCTTT TTGACCCGTTTGGGCTTTTTCCCTCAATTCTCTTTTTGTGTTAATTGAAAAATTCCTTGG CCGGGTTCTATCATCTCTTTCTCCGGGAACACACTAAACCTAAGTCCGATCGAAAAAGCG ATCACTTGACTCGAAATCACACGACTTTATCTCCCTGAACCCTAATGGATCATCCAGAAG ATGAATCCCACAGCGAGAAACAAGACGACGAGGAAGCTCTTGCTCGTCTTGAAGAGATTA AGAAGTCAATTGAAGCTAAACTGACTCTTCGTCAAAACAATCTCAATCCTGAACGACCTG ATTCAGCATATCTTAGGACTCTAGATTCTAGTATCAAGCGGAATACAGCAGTTATTAAGA AGTTAAAGCAGATCAATGAAGAGCAGCGAGAAGGGTTGATGGATGATCTGCGAGGTGTTA ACCTTAGCAAATTCGTTAGTGAAGCTGTTACTGCCATTTGTGAGGCTAAGCTCAAAAGCT CAGATATACAAGCAGCTGTTCAGATTTGCTCGCTACTTCATCAGAGGTATAAAGAATTTT CTGCCAGTCTAACACAAGGGCTCTTGAAAGTCTTCTTTCCTGGAAAATCTGCCGAAGATT TAGAAGCTGATAAAAACTCAAAGGCCATGAAAAAGCGCAGTACCCTAAAACTTCTTCTGG AGCTCTACTATGTTGGAGTAATAGAAGATAGTAACATCTTTATCAATATTATTAAGGATC TTACCAGTGTTGAACAACTGAAAGACAGAGATACGACCCAAACAAATCTGACACTTCTCA CCAGTTTTGCTCGGCAAGGAAGAATTTTTCTGGGGCTTCCTATCTCTGGACAAGACGAAG ATTTTTTCAAGGGTCTCGACGTCACTGCAGATCAGAAAAAGAGTTTTAAGAAAGCTTTCA ACACATATTATGATGCTCTTGCAGATCTCCTTCAGTCTGAGCACAAGTTACTTCTCCAAA TGGAGAAAGAAAATGCAAAGCTGGTAAATGCTAAAGGAGAGCTTAGTGAAGACAGTGCAT CTTCTTATGAAAAGCTGAGGAAATCATACGACCATCTCTATCGAAATATCTCATCTTTGG CCGAAGCACTTGATATGCAACCTCCTGTTATGCCAGAGGATGGTACAACTAGGCTCACAG CAGGGGACGAAGCTTCACCCTCTGGTACTGTAAAAGATACATCTGTCCCGGAACCTATTT GGGACGACGAAGACACCAAGACATTTTACGAGTGCTTGCCTGATCTGAGGGCATTTGTTC CAGCAGTATTGTTGGGAGAAGCAGAGCCTAAATCAAATGAGCAATCTGCTAAGGCAAAAG AGAAACTCTCTGAGTCTAGCTCTGAAGTTGTTGAAAATCAACAAACAACCGAAGATACAA CAGAGGTTTCTGCTGATTCTGCTAGTATGGATGATCGATCAAATGCTGAGCAGCCAAAAG AGAAGGAAGAAGTAGAAAAGGAAAAGGCTAAGGATACTAAGAAGGAAAAAGGAAAAGAGA AGGATAGTGAGAAAAAGATGGAACATGAGAAGGAGAAAGGTAAGAGCCTTGACGTGGCAA ACTTCGAAAGATTGTTACAGCGACTTCCGGGTTGTGTTAGCCGGGATCTTATTGACCAGT TAACGGTGGAATATTGTTATTTAAATTCCAAGACAAACAGAAAAAAACTTGTCAAAGCGT TATTTAATGTCCCTAGGACATCTCTGGAGTTGCTAGCATACTATTCGCGTATGGTTGCAA CACTAGCATCGTGCATGAAGGACATCCCGTCTATGCTTGTGCAGATGTTGGAAGACGAGT TTAATTCTCTGGTCCATAAAAAGGACCAAATGAATATTGAAACAAAAATCCGAAACATCA GATTTATTGGAGAACTCTGCAAGTTTAAAATTGTACCTGCTGGTCTTGTATTCAGTTGTT TGAAGGCTTGCTTAGATGAATTTACTCACCATAACATTGATGTTGCTTGCAATCTTCTGG AGACATGTGGCCGTTTCCTTTATCGGTCTCCTGAAACCACACTCAGGATGACAAATATGC TGGACATATTGATGCGCCTGAAAAATGTCAAGAATTTAGATCCTCGTCAAAGCACTCTTG TGGAAAATGCCTACTACTTGTGTAAACCTCCTGAAAGATCAGCAAGAATTTCTAAAGTTC GTCCACCATTGCATCAGTATGTTCGAAAATTGCTATTCTCTGATCTTGATAAAGATTCCA TTGCAAACGTACTGAAGCAACTGCGGAAGCTGCCATGGAGTGAATGTGAGCAATACATCT TAAAGTGCTTTATGAAGGTTCACAAGGGAAAGTATGGTCAGATTCACTTAATTGCTTCCT TGACTTCTGGTTTGAGCCGCCATCATGATGAGTTTGTGGTGGCTGTTGTTGATGAGGTAC TGGAGGAGATAAGGGTTGGGCTTGAGTTGAATGAATATGGGGCACAACAGAAGCGGCTAG CCCATATGAGATTCTTAGGGGAGCTGTACAACTATGAGCACGTAGATTCATCTGTGATAT TCGAGACACTTTATTTAACTCTTTTATATGGTCATGATACTTCAGAGCAAGAGGTGCTGG ATCCACCAGAAGATTTTTTCCGTGTCAGGATGGTTATCATTCTTCTGGAAACCTGTGGGC ACTACTTTGATCGAGGTTCTTCAAAGAAAAGGCTTGATCAATTTTTAATACACTTCCAGA GATACATCCTGAGCAAGGGCCACCTTCCACTGGATATTGAATTTGACTTGCAGGATCTAT TTGCCAATTTGAGACCTAATATGACTCGTTACTCAACCATTGATGAGGTCAATGCCGCTA TACTTCAGCTGGAAGAGCGTGAACATGCTTCTTCAGGAGACAAAGTCAGTATAGAAAGAC ACTCAGATACAAAGCCTTCAAACAAGTCGTCTTCTGATGTTATCTCTTCTAACGGGAAAA GTACTGCCAAAGATATTAGAGAGAATGGAGAAGCTCACGGAGAAGAAAGCGACAGCGATT CTGGTAGTGGCTCCGTGGTTCGTGATGGACAGAACGAAGAGTTGGATGATGGAAATCATG AGCGGGGATCTGAGAGTGGTGATGGGGATGATTATGATGATGGCGATGGACCTGGATCTG ATGATGATAAATTTCGTGTAAGGCAAAAGGTGGTAACCGTAGATCTTGAGGAACAAGCGG ACTTCGATCAAGAACTGAAGGCCTTACTTCAGGAGAGCATGGAGCAAAGGAAGCTAGAAT TACGAGGTAGACCGGCATTGAACATGACAATACCGATGAGTGTTTTTGAAGGATCTGGAA AAGATCATCATCATTTTGGGCGGGTAGTAGGTGAAAACGGTGAAGAAGTGTTGGATGAAG AGAATGGAGAGCAAAGAGAGGTTCAAGTGAAGGTCCTAGTGAAGAGAGGAAACAAACAAC AAACAAGGCAAATGCTAATCCCGAGTGATTGTGCTCTAGTGCAGAGCACAAAACAGAAAG AAGCTGCAGAATTGGAAGAGAAACAAGACATAAAGAGGTTAGTACTCGAGTACAATGAGA GGGATGAAGAGGAAGCAAATGGGTTAGGAACACAGATATTGAATTGGACTTCTGGAGGAA GCAGAGGATCCACTCGAACCGGGGAAGGCAGTGGGAAGAGTGGTGGGTCTCGTCACCGGT TTTATTATCATCAAGGAGGTGGTGGTTCGTATCATGCCCGACGAAAGTAACTTCATCCGG TTTAGGGGGAAAATTTGATAATCTTGCCTGTGTCAAAAGCGGTAATAGTTGGCTTTTTGC TACGGCTGAAAAGGACAATTCACAAGAAATCTCATGAGTTTCTGTGACAAAAGTTGATGT ATTCGACTTCACATTCTGTAGTGTTGGTTAAGTAAATCTCTGTGTGTGACCCTTTTTGTC CAGCTTGGTTAAATCTTGCATTTAATGATTATTTAGCATCATTCTCATGTGAAAAAAAAA AAGAAGAAGAAGAAGAAGAAATTACTAAGTAAGGAAAGAGAATGATGACGAGAAGAAAAC TTTTTAAGATTTGGTCTTACCATATACGGAAAGGCCAGATTTAGTGTGCAGAGG