Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Arabidopsis thaliana

CDS Sequence

CDS ID

AT2G38780.6
CDS Infomation

| cytochrome C oxidase subunit | Chr2:16210852-16214110 FORWARD LENGTH=1479 | 201606
Sequence

ATGATGAAATGGATGGGTGGTGATGTTGCATCCACGAGTCCACAAGTCTGTGAAAACATT
GCACTCCAAAAATGGCTAACCAGCTCTTCTCTCCACCAAACCATGGCTTCTTTCAACCAC
TCTTGGCTCTCTTCTCCACTCACCGAAACTCCCGCTTTCTTTTTTTCTCCATCTCAACAC
CCAAAATCCTTGAAACTCTCACTTTTCCGAACTCGGAGCAACTCGTCCTCACCGGACCGC
TCGTCAGAGGTTGAGCTCGATGTGGATCCGGTGAAGCTCGCATTGAAGAAAGCCGAAGCT
TATAAGAAATCGAAATCAGAGCAAAAAAAACCAGAGAAAAATGCCGGCGACGAGGAATTG
CCGCTCTCTGTTAAGGCTGCTATGCAAAAAGCCAATGATTATAAGAAAAGGAAAGGACTT
GGAACTGATGCTGTCGCAAAAGCTAAACCCAGTAATACAGATCAAAGTTTCGTTAGATTA
GCAAATAAGGTTGTTGAAGATAATGATGTTAAGAAGAAAGAATTGAAAGTCTCCAGCATT
GATTTCATGGGGCTTGGCTTTGCTGATAAGAAGAGCACGAGGGGGCTTCCAGCGGGACTT
GTTCCTGTTGTTGACTATCTTCCTGAAGGAGACTTACCTGAGGTGGAGTTTATTGTTGGT
GATAAAACAAGATTTGCGGAGAAAGTAAAGGAGGTTGAGCAAGAAGGAGATGGAAACTCT
GATGTGTATAAACCCAAAGTTTCTACATGGGGAGTTTTCCCAAGACCTAGCAACATCTCT
AAGACGTTTGGTGGTGGAAGGACACTCCGACCGGGGGATTCAGTTGAGACCGCTGAAGAG
AGGATTGTGAGAGAAGAAAAGACAAAAAAATTGCTCATAGCCTACAAGGAATCACTCGGA
CTGAACATTGATCCCAAACTCAAACTTGAGTGTGAGAAGGCAATAGACGAGGGGAACTCG
CTTATGGATTCTGGGAAACTCAAGGAAGCTTTGCCATACTATGAAAAGGTCATGGAGAAA
ATAGTTTTCAAGAGTGAGCTTCATGGACTAGCGGCTTTGCAGTGGTCTATTTGTCAGGAT
TCACTTCGAAATCCCAAAACTCTATCAAGCTCCAAAAGTCCCCAAAGAAAAACACAAAAT
ACTAGTTTATACCTACCAAGGACAGACAAAGCAAGGCGCATGTATGAGAAGCTTATTTCC
CATCCAAACCCGGGAGTGAGCAAGAAAGCGAGGCAGTTCATGTTCAGTTTTCAGGCAATG
GAGATGCTGAAGGTTAAGGGGTCGAGCTTTGCTGAAGGAAACACTGGTTATCAGGACTAC
TTTGAAGCCTTTGTTGAAGATAAAACGAATTACAAAGCGCAGGAGGAAAAAGAAGGAGAG
GAAATGGGGATAAATGAGACACTCCTATATGTGATTCTTCTTGCTTCTCCGATTCTAATG
GTCTTCATTGTAGCTGCACAGAGAGGGTATACACACTGA

Peptide Sequence

PEP ID

AT2G38780.6
PEP Infomation

| cytochrome C oxidase subunit | Chr2:16210852-16214110 FORWARD LENGTH=492 | 201606
Sequence

MMKWMGGDVASTSPQVCENIALQKWLTSSSLHQTMASFNHSWLSSPLTETPAFFFSPSQH
PKSLKLSLFRTRSNSSSPDRSSEVELDVDPVKLALKKAEAYKKSKSEQKKPEKNAGDEEL
PLSVKAAMQKANDYKKRKGLGTDAVAKAKPSNTDQSFVRLANKVVEDNDVKKKELKVSSI
DFMGLGFADKKSTRGLPAGLVPVVDYLPEGDLPEVEFIVGDKTRFAEKVKEVEQEGDGNS
DVYKPKVSTWGVFPRPSNISKTFGGGRTLRPGDSVETAEERIVREEKTKKLLIAYKESLG
LNIDPKLKLECEKAIDEGNSLMDSGKLKEALPYYEKVMEKIVFKSELHGLAALQWSICQD
SLRNPKTLSSSKSPQRKTQNTSLYLPRTDKARRMYEKLISHPNPGVSKKARQFMFSFQAM
EMLKVKGSSFAEGNTGYQDYFEAFVEDKTNYKAQEEKEGEEMGINETLLYVILLASPILM
VFIVAAQRGYTH

Transcript Sequence

Transcript ID

AT2G38780.6
Transcript Infomation

| cytochrome C oxidase subunit | Chr2:16210831-16215521 FORWARD LENGTH=2911 | 201606
Sequence

GCGCTCTAGTGACCAAGACCAATGATGAAATGGATGGGTGGTGATGTTGCATCCACGAGT
CCACAAGTCTGTGAAAACATTGCACTCCAAAAATGGCTAACCAGCTCTTCTCTCCACCAA
ACCATGGCTTCTTTCAACCACTCTTGGCTCTCTTCTCCACTCACCGAAACTCCCGCTTTC
TTTTTTTCTCCATCTCAACACCCAAAATCCTTGAAACTCTCACTTTTCCGAACTCGGAGC
AACTCGTCCTCACCGGACCGCTCGTCAGAGGTTGAGCTCGATGTGGATCCGGTGAAGCTC
GCATTGAAGAAAGCCGAAGCTTATAAGAAATCGAAATCAGAGCAAAAAAAACCAGAGAAA
AATGCCGGCGACGAGGAATTGCCGCTCTCTGTTAAGGCTGCTATGCAAAAAGCCAATGAT
TATAAGAAAAGGAAAGGACTTGGAACTGATGCTGTCGCAAAAGCTAAACCCAGTAATACA
GATCAAAGTTTCGTTAGATTAGCAAATAAGGTTGTTGAAGATAATGATGTTAAGAAGAAA
GAATTGAAAGTCTCCAGCATTGATTTCATGGGGCTTGGCTTTGCTGATAAGAAGAGCACG
AGGGGGCTTCCAGCGGGACTTGTTCCTGTTGTTGACTATCTTCCTGAAGGAGACTTACCT
GAGGTGGAGTTTATTGTTGGTGATAAAACAAGATTTGCGGAGAAAGTAAAGGAGGTTGAG
CAAGAAGGAGATGGAAACTCTGATGTGTATAAACCCAAAGTTTCTACATGGGGAGTTTTC
CCAAGACCTAGCAACATCTCTAAGACGTTTGGTGGTGGAAGGACACTCCGACCGGGGGAT
TCAGTTGAGACCGCTGAAGAGAGGATTGTGAGAGAAGAAAAGACAAAAAAATTGCTCATA
GCCTACAAGGAATCACTCGGACTGAACATTGATCCCAAACTCAAACTTGAGTGTGAGAAG
GCAATAGACGAGGGGAACTCGCTTATGGATTCTGGGAAACTCAAGGAAGCTTTGCCATAC
TATGAAAAGGTCATGGAGAAAATAGTTTTCAAGAGTGAGCTTCATGGACTAGCGGCTTTG
CAGTGGTCTATTTGTCAGGATTCACTTCGAAATCCCAAAACTCTATCAAGCTCCAAAAGT
CCCCAAAGAAAAACACAAAATACTAGTTTATACCTACCAAGGACAGACAAAGCAAGGCGC
ATGTATGAGAAGCTTATTTCCCATCCAAACCCGGGAGTGAGCAAGAAAGCGAGGCAGTTC
ATGTTCAGTTTTCAGGCAATGGAGATGCTGAAGGTTAAGGGGTCGAGCTTTGCTGAAGGA
AACACTGGTTATCAGGACTACTTTGAAGCCTTTGTTGAAGATAAAACGAATTACAAAGCG
CAGGAGGAAAAAGAAGGAGAGGAAATGGGGATAAATGAGACACTCCTATATGTGATTCTT
CTTGCTTCTCCGATTCTAATGGTCTTCATTGTAGCTGCACAGAGAGGGTATACACACTGA
AGACACAAATTCTTGTCAATTTCTTACATGTAAGTGTTGTATATATTATGAATTAATTCA
TTTTATTACAGTTAAGGATTAATAACACAAAGCTTCTTTTATTAATTGAAAGAACATAAC
AGAATCAGAGAATCAAACACCAAAGAGAATAAATAAACAAAGCTAGTTGATCCTAGTTTC
TTCTACCTTTGGATGAGTCTGATACTTCATCTCTATAGATACTAAAACATAAAACAAACC
CCACTAGGAAATGATTGAATAAAGAAATTGAAATCCATCTTTAAAACTTGGAATCCCCAA
GTTGACTCAAAAGTCTTAACCACACTTTACACATTTCATTCCGTGTAGCAAATAGTAACG
GCTTGTGCAATGCTAAACCCTGAGGAGTCATAAGATTTGATCATCCATGGCCACACCACA
TGTCACAAATCTTGACTACTTCTTGGTCTGACCCTGACCAGCTGCCGAGCCACCTTTACC
TCCTCCCGCAGAACCAGCAGCTCCACCAGCATTAACCATTGTAACTTTAAACCTTTCATG
TCTTAGATCTGATGGACCCAAATTAACCCCTTTCGAAGTGAAACGTGGCGAACCAGCACT
GAGACTCCTCCGCATAGTCATTGACTTTGTAGGAGGACGAGAATCTTGTTTAATTTGGGA
CACAGCGTCTCCGATTTTGTTGAAGAAACCAAGAAACTCGTCTTTAGCTGCACCTGGAAA
CATCTTTTTAAGCAGCTGAAGTTGTCCCACGTAAAGCTCTCTCATATACTCTAATACCAT
CAGTACTCTCATGTCCATCCTTGATCCCTCATCCTCATCACCATCACCATCACCATCATA
TTCAACATCATCATTTTGTTCGTCATAAACTCTGTGGTAGCTATCTCCCATGTCGCTGTA
CTGTCTCTTCATACTCCCACTTCTCAACCTTTTAGATTCAGGGTCGTCAAACAATCCAAA
GAAGAGACTGTTCTTGCAATTGTTGTCTTCGTCCTTTGTGGATTGGTGATTCTGAGAATT
GATGTTAAGATGTTTCTTCCCCATAGACATAATTTTCACAATCACAACAGCAAGAAAGAA
GTTGGCCAAATCTTTTGAGCAGGGTATCTTTTGTTTCTTTTGTTTTGTATTGTTTAGAGT
ATGTTTCAAGATCTGAAGAAGGAAGCAAAAATATGTTTAGATATAAAAAGAAATGAAGAT
TTGGAAGCAAAATAATGGGGAGAAAGATAAGATTTTTTGCTTGTTCCCGACTTGTCAACA
CGACGTTGTCACGACTTCTTCAACGAAGACTAGATGGGTCCAAAGCATTTGATTTTTATT
TGTTTCCGGCCAATCATGAAGCGACAGTGTATGTAATTGTCACCATTTTGAGTAGTTTCT
TGGGAGAAGCTGCAACTTCGGAGATAAGTGC