Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Arabidopsis thaliana

CDS Sequence

CDS ID

AT2G22440.1
CDS Infomation

| non-LTR retroelement reverse transcriptase | Chr2:9528910-9529917 FORWARD LENGTH=771 | 201606
Sequence

ATGCTGACTCGCGTATGGAAAGATCCATGGATTCCCACTATCCTAGCGCGGCCTGCAAAG
AGCATTCTTAACATAAGAGATTCTCTACTCTATGTCAATGATTTAATTGACCAAAACACA
AATTTGTGGAAATTGGACCGTCTCCAAGCACTGATCGATCCCGTTGATATTCCACTCATT
TTAGGGATTCGCCCAAGTCGTACCTACTTGAGTGATGGCTTTAGCTGGTCTCACACTAAA
TCCGGTAATTATACTGTTAAGTCAGGATATTGGGTCGCGAGAGATCTTTCTCGTCCTACT
TGTGACCCCCCTTTTCAGGGACCAGGGAATATTTTCCCTAGAAACTCTCTCTTCTATAAT
TTCGACTTCCTTTTTTGGCGTGACCGAGAATTTGGAATTGGAGAAAAGGTGTTGGAACTC
TTTCCATGGATAATTTGGTATATCTGGAAAAGTAAAAATCGTTTTGTTTTTGAGAACTTC
AGGGAACCTCCCCCTGAAACTTTGGTTTTGGCACTTCAAGAGACAGCTGTTTGGAAACAA
GCAACTCTAAAAGAGGATGATTCCACTCGTCCAATCGTGTTCGTAGGTTCTTCTCAGACC
CCGTCCACCTTGCTCCCTGAATGTCAACTCGATGCATCATGGCATGTAGATGACACATTG
AGCGGGCATGGTTGGGTACTTGTTCGACAAGACTTGGTCATCCACCTTGGCCTTAAGAGC
ACTCGTCGAAATTTATCACCGCTTCATGCGGAATTTAACTCTTTGTTATAG

Peptide Sequence

PEP ID

AT2G22440.1
PEP Infomation

| non-LTR retroelement reverse transcriptase | Chr2:9528910-9529917 FORWARD LENGTH=256 | 201606
Sequence

MLTRVWKDPWIPTILARPAKSILNIRDSLLYVNDLIDQNTNLWKLDRLQALIDPVDIPLI
LGIRPSRTYLSDGFSWSHTKSGNYTVKSGYWVARDLSRPTCDPPFQGPGNIFPRNSLFYN
FDFLFWRDREFGIGEKVLELFPWIIWYIWKSKNRFVFENFREPPPETLVLALQETAVWKQ
ATLKEDDSTRPIVFVGSSQTPSTLLPECQLDASWHVDDTLSGHGWVLVRQDLVIHLGLKS
TRRNLSPLHAEFNSLL

Transcript Sequence

Transcript ID

AT2G22440.1
Transcript Infomation

| non-LTR retroelement reverse transcriptase | Chr2:9528910-9530060 FORWARD LENGTH=914 | 201606
Sequence

ATGCTGACTCGCGTATGGAAAGATCCATGGATTCCCACTATCCTAGCGCGGCCTGCAAAG
AGCATTCTTAACATAAGAGATTCTCTACTCTATGTCAATGATTTAATTGACCAAAACACA
AATTTGTGGAAATTGGACCGTCTCCAAGCACTGATCGATCCCGTTGATATTCCACTCATT
TTAGGGATTCGCCCAAGTCGTACCTACTTGAGTGATGGCTTTAGCTGGTCTCACACTAAA
TCCGGTAATTATACTGTTAAGTCAGGATATTGGGTCGCGAGAGATCTTTCTCGTCCTACT
TGTGACCCCCCTTTTCAGGGACCAGGGAATATTTTCCCTAGAAACTCTCTCTTCTATAAT
TTCGACTTCCTTTTTTGGCGTGACCGAGAATTTGGAATTGGAGAAAAGGTGTTGGAACTC
TTTCCATGGATAATTTGGTATATCTGGAAAAGTAAAAATCGTTTTGTTTTTGAGAACTTC
AGGGAACCTCCCCCTGAAACTTTGGTTTTGGCACTTCAAGAGACAGCTGTTTGGAAACAA
GCAACTCTAAAAGAGGATGATTCCACTCGTCCAATCGTGTTCGTAGGTTCTTCTCAGACC
CCGTCCACCTTGCTCCCTGAATGTCAACTCGATGCATCATGGCATGTAGATGACACATTG
AGCGGGCATGGTTGGGTACTTGTTCGACAAGACTTGGTCATCCACCTTGGCCTTAAGAGC
ACTCGTCGAAATTTATCACCGCTTCATGCGGAATTTAACTCTTTGTTATAGGCAATGGAG
TGCATGATCTCTATTGGTGATACTTCTGGTACTTTTGCTTCGGATTGCTCAGACTTGATT
GCTATCCTTGATAACCAAGACGATTGGCTGACTTTTGCAGCGGAATTGGCTTCATATCGT
TCTTTAGTTTGTTT