Gene sequences

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SNP Detection
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Trait-Related Loci

Arabidopsis thaliana

CDS Sequence

CDS ID	AT1G80270.1
CDS Infomation	\| PENTATRICOPEPTIDE REPEAT 596 \| Chr1:30181265-30183331 FORWARD LENGTH=1791 \| 201606
Sequence	ATGTTCGCTCTTTCCAAGGTTTTACGAAGAACGCAGAGACTCCGACTGGGAGCTTGTTCT GCTGTGTTTTCAAAAGATATACAATTAGGAGGAGAAAGGAGCTTTGATTCCAATTCGATT GCTTCTACTAAACGTGAAGCTGTGCCAAGATTTTACGAGATCTCCTCTTTGAGTAATCGT GCTCTTTCCTCCAGTGCTGGCACTAAAAGTGATCAAGAGGAAGACGACCTCGAAGACGGT TTCTCAGAACTGGAAGGTTCAAAGTCTGGCCAAGGTTCAACTAGTAGTGATGAAGATGAG GGAAAGCTCTCCGCTGATGAAGAAGAAGAAGAAGAACTAGACCTCATTGAAACCGACGTT AGTAGAAAAACAGTTGAAAAGAAACAATCTGAGCTATTTAAGACCATTGTCTCCGCACCC GGTCTGTCTATAGGTAGTGCTCTTGATAAATGGGTGGAAGAAGGAAATGAGATCACTCGA GTTGAGATTGCTAAGGCAATGCTCCAGCTGCGCAGGCGTCGCATGTATGGAAGAGCGTTA CAGATGTCAGAATGGTTGGAAGCAAATAAGAAAATTGAAATGACTGAGAGAGATTATGCT TCTCGGTTAGATCTGACAGTTAAGATTCGTGGTTTAGAAAAGGGAGAAGCTTGTATGCAG AAGATCCCAAAATCTTTTAAAGGGGAAGTGCTTTACCGTACCCTCTTGGCGAATTGTGTT GCTGCTGGCAATGTGAAGAAATCCGAACTGGTGTTTAACAAAATGAAGGACTTGGGATTC CCTCTCTCTGGATTTACTTGTGATCAGATGCTTCTGCTCCACAAGAGGATCGACAGGAAG AAAATTGCTGATGTACTATTGCTCATGGAGAAAGAAAATATCAAGCCAAGTCTTCTCACT TACAAAATCCTGATTGATGTCAAAGGTGCAACAAATGACATAAGTGGTATGGAGCAAATT CTGGAGACAATGAAAGATGAAGGTGTTGAACTGGACTTCCAGACGCAAGCTCTCACTGCT AGACACTATTCGGGAGCTGGCCTTAAAGATAAAGCCGAGAAAGTCTTGAAAGAGATGGAA GGTGAAAGCTTAGAGGCAAATCGCCGGGCATTCAAAGATTTGCTCTCCATCTATGCCTCT CTTGGGAGAGAAGATGAAGTGAAAAGAATATGGAAGATCTGTGAATCAAAGCCCTACTTT GAGGAATCCCTTGCTGCAATCCAAGCTTTTGGAAAGCTCAATAAAGTGCAAGAAGCAGAG GCGATTTTTGAGAAGATTGTGAAGATGGACAGAAGAGCTTCTTCTAGTACTTACTCCGTT CTCTTGAGGGTTTACGTAGATCACAAGATGCTCTCAAAGGGTAAGGATCTGGTTAAACGA ATGGCTGAGAGCGGTTGCAGGATCGAGGCAACGACATGGGATGCACTCATCAAGCTCTAT GTGGAAGCTGGAGAAGTTGAAAAGGCTGATTCTTTGCTGGACAAGGCATCAAAACAGAGC CATACAAAACTGATGATGAACTCCTTCATGTATATCATGGACGAGTACTCAAAACGGGGA GATGTTCATAACACAGAGAAGATATTCCTAAAAATGAGGGAAGCTGGGTATACATCTCGG CTTAGGCAGTTCCAAGCCCTCATGCAGGCTTACATAAACGCCAAATCTCCTGCATATGGA ATGCGAGATAGATTGAAGGCGGATAATATCTTTCCAAACAAATCCATGGCTGCACAGTTG GCTCAAGGTGATCCATTTAAGAAGACAGCTATCTCTGATATTCTGGATTGA

Peptide Sequence

PEP ID	AT1G80270.1
PEP Infomation	\| PENTATRICOPEPTIDE REPEAT 596 \| Chr1:30181265-30183331 FORWARD LENGTH=596 \| 201606
Sequence	MFALSKVLRRTQRLRLGACSAVFSKDIQLGGERSFDSNSIASTKREAVPRFYEISSLSNR ALSSSAGTKSDQEEDDLEDGFSELEGSKSGQGSTSSDEDEGKLSADEEEEEELDLIETDV SRKTVEKKQSELFKTIVSAPGLSIGSALDKWVEEGNEITRVEIAKAMLQLRRRRMYGRAL QMSEWLEANKKIEMTERDYASRLDLTVKIRGLEKGEACMQKIPKSFKGEVLYRTLLANCV AAGNVKKSELVFNKMKDLGFPLSGFTCDQMLLLHKRIDRKKIADVLLLMEKENIKPSLLT YKILIDVKGATNDISGMEQILETMKDEGVELDFQTQALTARHYSGAGLKDKAEKVLKEME GESLEANRRAFKDLLSIYASLGREDEVKRIWKICESKPYFEESLAAIQAFGKLNKVQEAE AIFEKIVKMDRRASSSTYSVLLRVYVDHKMLSKGKDLVKRMAESGCRIEATTWDALIKLY VEAGEVEKADSLLDKASKQSHTKLMMNSFMYIMDEYSKRGDVHNTEKIFLKMREAGYTSR LRQFQALMQAYINAKSPAYGMRDRLKADNIFPNKSMAAQLAQGDPFKKTAISDILD

Transcript Sequence

Transcript ID	AT1G80270.1
Transcript Infomation	\| PENTATRICOPEPTIDE REPEAT 596 \| Chr1:30180988-30183507 FORWARD LENGTH=2071 \| 201606
Sequence	GTAGTCTCTCTACTCTCTAGATCCCATCCCATTTCTTGATCAGCCTCGCGCATTGTGTGC TTACACAGCAGGTAATTTCCAGAGAGATTTTCAACAGAGGAAGCATGTTCGCTCTTTCCA AGGTTTTACGAAGAACGCAGAGACTCCGACTGGGAGCTTGTTCTGCTGTGTTTTCAAAAG ATATACAATTAGGAGGAGAAAGGAGCTTTGATTCCAATTCGATTGCTTCTACTAAACGTG AAGCTGTGCCAAGATTTTACGAGATCTCCTCTTTGAGTAATCGTGCTCTTTCCTCCAGTG CTGGCACTAAAAGTGATCAAGAGGAAGACGACCTCGAAGACGGTTTCTCAGAACTGGAAG GTTCAAAGTCTGGCCAAGGTTCAACTAGTAGTGATGAAGATGAGGGAAAGCTCTCCGCTG ATGAAGAAGAAGAAGAAGAACTAGACCTCATTGAAACCGACGTTAGTAGAAAAACAGTTG AAAAGAAACAATCTGAGCTATTTAAGACCATTGTCTCCGCACCCGGTCTGTCTATAGGTA GTGCTCTTGATAAATGGGTGGAAGAAGGAAATGAGATCACTCGAGTTGAGATTGCTAAGG CAATGCTCCAGCTGCGCAGGCGTCGCATGTATGGAAGAGCGTTACAGATGTCAGAATGGT TGGAAGCAAATAAGAAAATTGAAATGACTGAGAGAGATTATGCTTCTCGGTTAGATCTGA CAGTTAAGATTCGTGGTTTAGAAAAGGGAGAAGCTTGTATGCAGAAGATCCCAAAATCTT TTAAAGGGGAAGTGCTTTACCGTACCCTCTTGGCGAATTGTGTTGCTGCTGGCAATGTGA AGAAATCCGAACTGGTGTTTAACAAAATGAAGGACTTGGGATTCCCTCTCTCTGGATTTA CTTGTGATCAGATGCTTCTGCTCCACAAGAGGATCGACAGGAAGAAAATTGCTGATGTAC TATTGCTCATGGAGAAAGAAAATATCAAGCCAAGTCTTCTCACTTACAAAATCCTGATTG ATGTCAAAGGTGCAACAAATGACATAAGTGGTATGGAGCAAATTCTGGAGACAATGAAAG ATGAAGGTGTTGAACTGGACTTCCAGACGCAAGCTCTCACTGCTAGACACTATTCGGGAG CTGGCCTTAAAGATAAAGCCGAGAAAGTCTTGAAAGAGATGGAAGGTGAAAGCTTAGAGG CAAATCGCCGGGCATTCAAAGATTTGCTCTCCATCTATGCCTCTCTTGGGAGAGAAGATG AAGTGAAAAGAATATGGAAGATCTGTGAATCAAAGCCCTACTTTGAGGAATCCCTTGCTG CAATCCAAGCTTTTGGAAAGCTCAATAAAGTGCAAGAAGCAGAGGCGATTTTTGAGAAGA TTGTGAAGATGGACAGAAGAGCTTCTTCTAGTACTTACTCCGTTCTCTTGAGGGTTTACG TAGATCACAAGATGCTCTCAAAGGGTAAGGATCTGGTTAAACGAATGGCTGAGAGCGGTT GCAGGATCGAGGCAACGACATGGGATGCACTCATCAAGCTCTATGTGGAAGCTGGAGAAG TTGAAAAGGCTGATTCTTTGCTGGACAAGGCATCAAAACAGAGCCATACAAAACTGATGA TGAACTCCTTCATGTATATCATGGACGAGTACTCAAAACGGGGAGATGTTCATAACACAG AGAAGATATTCCTAAAAATGAGGGAAGCTGGGTATACATCTCGGCTTAGGCAGTTCCAAG CCCTCATGCAGGCTTACATAAACGCCAAATCTCCTGCATATGGAATGCGAGATAGATTGA AGGCGGATAATATCTTTCCAAACAAATCCATGGCTGCACAGTTGGCTCAAGGTGATCCAT TTAAGAAGACAGCTATCTCTGATATTCTGGATTGAGTAGTCTCTCTCCCTACACTTTTCT TCTATCTGCTTGCAAGAAGTATCTCATTTGTCGTCCTAACGTTTAGTTTGAGAGAGTAAC GTTAAGTTTAAGAACCTGCTTAGTTGCTGTGTTTTTAATGTTTCTATTCGGTTCTTTGGT GATCACACTTCAGAGACCTTCAAGTTTCATG