Gene sequences

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SNP Detection
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Trait-Related Loci

Arabidopsis thaliana

CDS Sequence

CDS ID	AT1G78390.1
CDS Infomation	\| nine-cis-epoxycarotenoid dioxygenase 9 \| Chr1:29490895-29492868 REVERSE LENGTH=1974 \| 201606
Sequence	ATGACGATAATAACCATTATTTCTGGTATGTATATATATAGCCTTCTGTCCCAAGATGCT CATCACTCACAATATGGACAAAACACAAACTTGGTCTTGAAGAAACCAATACCAAAACCC CAAACCGCAGCGTTTAATCAAGAATCGACTATGGCTTCTACTACCTTACTTCCTTCTACT TCAACCCAATTCCTCGACCGAACTTTCTCAACTTCATCTTCCTCTTCGAGACCTAAACTT CAATCTCTATCTTTTTCCTCAACACTTAGAAACAAGAAACTAGTAGTCCCCTGCTATGTT TCTTCCTCCGTCAACAAAAAATCTTCCGTCTCGTCTTCTCTCCAATCTCCGACATTCAAA CCACCGTCTTGGAAGAAACTATGTAACGATGTCACCAACTTGATCCCCAAAACGACGAAT CAGAATCCAAAATTAAACCCGGTGCAGAGAACCGCCGCTATGGTTTTAGACGCGGTGGAA AACGCCATGATCTCACACGAGCGCCGCCGTCATCCCCATCCTAAAACGGCGGATCCTGCC GTCCAAATAGCCGGGAACTTCTTCCCGGTACCGGAGAAACCTGTCGTGCATAACCTTCCG GTGACTGGAACAGTACCAGAATGCATTCAAGGAGTTTACGTCAGAAACGGAGCAAATCCA CTTCACAAACCAGTCTCCGGCCACCATTTGTTCGACGGAGACGGTATGGTACACGCTGTC CGGTTCGATAACGGCTCGGTTAGCTACGCTTGTCGGTTTACCGAAACAAACCGGTTGGTT CAAGAACGTGAATGTGGTCGTCCGGTTTTCCCCAAAGCAATTGGAGAGCTTCACGGACAT TTAGGAATCGCCAAGCTTATGCTCTTCAATACCCGCGGGCTATTTGGGTTAGTCGACCCG ACCGGAGGACTCGGTGTCGCTAACGCCGGTTTAGTTTATTTCAATGGTCATCTCTTAGCC ATGTCCGAAGACGATTTACCGTACCATGTCAAAGTTACTCAAACCGGAGATTTAGAAACT TCGGGTCGGTACGATTTCGACGGTCAGTTAAAATCAACAATGATAGCCCACCCGAAAATC GATCCCGAAACCCGAGAACTCTTCGCTTTAAGCTACGACGTCGTTTCAAAGCCTTACTTA AAATACTTCAGATTCACATCCGACGGTGAGAAATCACCAGACGTCGAGATTCCGCTTGAT CAACCAACGATGATCCACGATTTCGCGATCACTGAGAATTTCGTAGTGATTCCAGACCAA CAAGTGGTATTCCGATTGCCGGAGATGATAAGAGGTGGTTCTCCGGTGGTTTACGACGAG AAGAAGAAATCAAGATTCGGGATTTTGAATAAAAACGCGAAAGATGCTTCGTCGATTCAA TGGATCGAAGTACCAGATTGTTTTTGTTTCCATCTATGGAACTCTTGGGAAGAACCAGAA ACAGACGAGGTTGTCGTGATTGGATCATGCATGACGCCACCTGATTCAATTTTCAACGAA CACGACGAAACACTTCAGAGTGTTTTGTCGGAGATAAGGCTAAACCTTAAAACAGGGGAA TCAACACGTAGACCGGTTATCTCGGAACAAGTTAATCTCGAAGCTGGTATGGTCAACCGG AATTTATTAGGTAGAAAAACCCGGTATGCTTATCTGGCTTTAACCGAACCGTGGCCTAAA GTGTCCGGTTTCGCTAAAGTGGACTTATCGACCGGAGAGATTCGAAAGTATATTTACGGA GAGGGGAAATACGGAGGAGAGCCTCTGTTTCTACCTTCCGGTGACGGAGAAGAAGACGGA GGTTACATAATGGTGTTCGTTCACGACGAGGAGAAGGTGAAATCGGAACTCCAACTCATA AACGCCGTTAATATGAAGCTTGAAGCTACCGTAACGCTTCCGTCGAGAGTGCCTTACGGT TTCCACGGAACGTTCATCAGTAAGGAAGATTTATCGAAGCAAGCTTTGTGTTAG

Peptide Sequence

PEP ID	AT1G78390.1
PEP Infomation	\| nine-cis-epoxycarotenoid dioxygenase 9 \| Chr1:29490895-29492868 REVERSE LENGTH=657 \| 201606
Sequence	MTIITIISGMYIYSLLSQDAHHSQYGQNTNLVLKKPIPKPQTAAFNQESTMASTTLLPST STQFLDRTFSTSSSSSRPKLQSLSFSSTLRNKKLVVPCYVSSSVNKKSSVSSSLQSPTFK PPSWKKLCNDVTNLIPKTTNQNPKLNPVQRTAAMVLDAVENAMISHERRRHPHPKTADPA VQIAGNFFPVPEKPVVHNLPVTGTVPECIQGVYVRNGANPLHKPVSGHHLFDGDGMVHAV RFDNGSVSYACRFTETNRLVQERECGRPVFPKAIGELHGHLGIAKLMLFNTRGLFGLVDP TGGLGVANAGLVYFNGHLLAMSEDDLPYHVKVTQTGDLETSGRYDFDGQLKSTMIAHPKI DPETRELFALSYDVVSKPYLKYFRFTSDGEKSPDVEIPLDQPTMIHDFAITENFVVIPDQ QVVFRLPEMIRGGSPVVYDEKKKSRFGILNKNAKDASSIQWIEVPDCFCFHLWNSWEEPE TDEVVVIGSCMTPPDSIFNEHDETLQSVLSEIRLNLKTGESTRRPVISEQVNLEAGMVNR NLLGRKTRYAYLALTEPWPKVSGFAKVDLSTGEIRKYIYGEGKYGGEPLFLPSGDGEEDG GYIMVFVHDEEKVKSELQLINAVNMKLEATVTLPSRVPYGFHGTFISKEDLSKQALC

Transcript Sequence

Transcript ID	AT1G78390.1
Transcript Infomation	\| nine-cis-epoxycarotenoid dioxygenase 9 \| Chr1:29490705-29492875 REVERSE LENGTH=2171 \| 201606
Sequence	AGCGTGAATGACGATAATAACCATTATTTCTGGTATGTATATATATAGCCTTCTGTCCCA AGATGCTCATCACTCACAATATGGACAAAACACAAACTTGGTCTTGAAGAAACCAATACC AAAACCCCAAACCGCAGCGTTTAATCAAGAATCGACTATGGCTTCTACTACCTTACTTCC TTCTACTTCAACCCAATTCCTCGACCGAACTTTCTCAACTTCATCTTCCTCTTCGAGACC TAAACTTCAATCTCTATCTTTTTCCTCAACACTTAGAAACAAGAAACTAGTAGTCCCCTG CTATGTTTCTTCCTCCGTCAACAAAAAATCTTCCGTCTCGTCTTCTCTCCAATCTCCGAC ATTCAAACCACCGTCTTGGAAGAAACTATGTAACGATGTCACCAACTTGATCCCCAAAAC GACGAATCAGAATCCAAAATTAAACCCGGTGCAGAGAACCGCCGCTATGGTTTTAGACGC GGTGGAAAACGCCATGATCTCACACGAGCGCCGCCGTCATCCCCATCCTAAAACGGCGGA TCCTGCCGTCCAAATAGCCGGGAACTTCTTCCCGGTACCGGAGAAACCTGTCGTGCATAA CCTTCCGGTGACTGGAACAGTACCAGAATGCATTCAAGGAGTTTACGTCAGAAACGGAGC AAATCCACTTCACAAACCAGTCTCCGGCCACCATTTGTTCGACGGAGACGGTATGGTACA CGCTGTCCGGTTCGATAACGGCTCGGTTAGCTACGCTTGTCGGTTTACCGAAACAAACCG GTTGGTTCAAGAACGTGAATGTGGTCGTCCGGTTTTCCCCAAAGCAATTGGAGAGCTTCA CGGACATTTAGGAATCGCCAAGCTTATGCTCTTCAATACCCGCGGGCTATTTGGGTTAGT CGACCCGACCGGAGGACTCGGTGTCGCTAACGCCGGTTTAGTTTATTTCAATGGTCATCT CTTAGCCATGTCCGAAGACGATTTACCGTACCATGTCAAAGTTACTCAAACCGGAGATTT AGAAACTTCGGGTCGGTACGATTTCGACGGTCAGTTAAAATCAACAATGATAGCCCACCC GAAAATCGATCCCGAAACCCGAGAACTCTTCGCTTTAAGCTACGACGTCGTTTCAAAGCC TTACTTAAAATACTTCAGATTCACATCCGACGGTGAGAAATCACCAGACGTCGAGATTCC GCTTGATCAACCAACGATGATCCACGATTTCGCGATCACTGAGAATTTCGTAGTGATTCC AGACCAACAAGTGGTATTCCGATTGCCGGAGATGATAAGAGGTGGTTCTCCGGTGGTTTA CGACGAGAAGAAGAAATCAAGATTCGGGATTTTGAATAAAAACGCGAAAGATGCTTCGTC GATTCAATGGATCGAAGTACCAGATTGTTTTTGTTTCCATCTATGGAACTCTTGGGAAGA ACCAGAAACAGACGAGGTTGTCGTGATTGGATCATGCATGACGCCACCTGATTCAATTTT CAACGAACACGACGAAACACTTCAGAGTGTTTTGTCGGAGATAAGGCTAAACCTTAAAAC AGGGGAATCAACACGTAGACCGGTTATCTCGGAACAAGTTAATCTCGAAGCTGGTATGGT CAACCGGAATTTATTAGGTAGAAAAACCCGGTATGCTTATCTGGCTTTAACCGAACCGTG GCCTAAAGTGTCCGGTTTCGCTAAAGTGGACTTATCGACCGGAGAGATTCGAAAGTATAT TTACGGAGAGGGGAAATACGGAGGAGAGCCTCTGTTTCTACCTTCCGGTGACGGAGAAGA AGACGGAGGTTACATAATGGTGTTCGTTCACGACGAGGAGAAGGTGAAATCGGAACTCCA ACTCATAAACGCCGTTAATATGAAGCTTGAAGCTACCGTAACGCTTCCGTCGAGAGTGCC TTACGGTTTCCACGGAACGTTCATCAGTAAGGAAGATTTATCGAAGCAAGCTTTGTGTTA GTTTTAGATTTTTGTAGGATCTTATAAATGTTAATATGAGTGATAGTGATTAGTGACATA GGATTGTTGCCTGAGGGATTGTTATGCATTAGTCCCCGGCAACGAGTTTCTTGAATTTTA GTTATACGTATATACTGTGATTATGTATTATGTATATACTATGATCAAGTGTCCAATGAT CCAACTGTGTA