Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Arabidopsis thaliana

CDS Sequence

CDS ID

AT1G54540.1
CDS Infomation

| Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | Chr1:20367702-20368421 REVERSE LENGTH=720 | 201606
Sequence

ATGGGAGATCAACAAAAAATTCACCCGGTTCTTCAAATGGAAGCCAACAAGACGAAGACA
ACAACACCAGCTCCCGGAAAGACAGTCTTGCTTCCGGTTCAACGGCCGATTCCGCCTCCT
GTTATTCCTAGTAAGAATCGAAATATGTGCTGCAAAATCTTTTGTTGGGTGTTAAGCCTT
CTAGTCATTGCATTGATCGCGTTAGCAATTGCGGTTGCGGTTGTATACTTTGTTTTCCAC
CCTAAACTCCCGAGTTACGAAGTCAACAGTTTACGAGTTACCAACCTTGGAATCAATCTA
GACCTCTCTCTTTCCGCGGAGTTTAAAGTCGAGATCACAGCTCGTAATCCCAACGAAAAG
ATTGGGATTTATTACGAGAAAGGAGGTCATATCGGTGTGTGGTACGACAAGACAAAGCTA
TGTGAAGGCCCTATACCGAGGTTTTATCAAGGACATCGCAATGTAACTAAACTAAATGTG
GCTCTAACGGGAAGAGCGCAATATGGGAACACTGTCTTGGCGGCATTGCAGCAGCAACAA
CAAACAGGACGTGTACCGTTAGATCTTAAAGTGAATGCACCTGTCGCCATCAAACTCGGA
AATCTGAAGATGAAGAAGATTCGGATATTGGGGAGTTGTAAGCTTGTTGTTGATAGTTTA
TCAACGAACAATAATATCAACATCAAAGCTAGTGATTGCAGTTTTAAGGCCAAACTCTGA

Peptide Sequence

PEP ID

AT1G54540.1
PEP Infomation

| Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | Chr1:20367702-20368421 REVERSE LENGTH=239 | 201606
Sequence

MGDQQKIHPVLQMEANKTKTTTPAPGKTVLLPVQRPIPPPVIPSKNRNMCCKIFCWVLSL
LVIALIALAIAVAVVYFVFHPKLPSYEVNSLRVTNLGINLDLSLSAEFKVEITARNPNEK
IGIYYEKGGHIGVWYDKTKLCEGPIPRFYQGHRNVTKLNVALTGRAQYGNTVLAALQQQQ
QTGRVPLDLKVNAPVAIKLGNLKMKKIRILGSCKLVVDSLSTNNNINIKASDCSFKAKL

Transcript Sequence

Transcript ID

AT1G54540.1
Transcript Infomation

| Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | Chr1:20367553-20368511 REVERSE LENGTH=959 | 201606
Sequence

CAACTTCACAAGACAAAACTTTGATATAAAATAAAGTACATATAATACATGTTGGTGCAT
TAGTATTACTAAATACAAAGTTGTAGATCCATGGGAGATCAACAAAAAATTCACCCGGTT
CTTCAAATGGAAGCCAACAAGACGAAGACAACAACACCAGCTCCCGGAAAGACAGTCTTG
CTTCCGGTTCAACGGCCGATTCCGCCTCCTGTTATTCCTAGTAAGAATCGAAATATGTGC
TGCAAAATCTTTTGTTGGGTGTTAAGCCTTCTAGTCATTGCATTGATCGCGTTAGCAATT
GCGGTTGCGGTTGTATACTTTGTTTTCCACCCTAAACTCCCGAGTTACGAAGTCAACAGT
TTACGAGTTACCAACCTTGGAATCAATCTAGACCTCTCTCTTTCCGCGGAGTTTAAAGTC
GAGATCACAGCTCGTAATCCCAACGAAAAGATTGGGATTTATTACGAGAAAGGAGGTCAT
ATCGGTGTGTGGTACGACAAGACAAAGCTATGTGAAGGCCCTATACCGAGGTTTTATCAA
GGACATCGCAATGTAACTAAACTAAATGTGGCTCTAACGGGAAGAGCGCAATATGGGAAC
ACTGTCTTGGCGGCATTGCAGCAGCAACAACAAACAGGACGTGTACCGTTAGATCTTAAA
GTGAATGCACCTGTCGCCATCAAACTCGGAAATCTGAAGATGAAGAAGATTCGGATATTG
GGGAGTTGTAAGCTTGTTGTTGATAGTTTATCAACGAACAATAATATCAACATCAAAGCT
AGTGATTGCAGTTTTAAGGCCAAACTCTGAGATGTTCTTAGATCTAGGCGCTTTTACTTT
TTATTGGTGTTAATTACTCAATTCATCATTTTCTTATGCATTTGATTCATATTTTGGATT
AATGGTTTTATTCTCAATAAAAGATTGATTTTTATTTTTTAAATTACGAGAGATTTTTG