Gene sequences

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SNP Detection
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Trait-Related Loci

Arabidopsis thaliana

CDS Sequence

CDS ID	AT1G53840.1
CDS Infomation	\| pectin methylesterase 1 \| Chr1:20101533-20103458 FORWARD LENGTH=1761 \| 201606
Sequence	ATGGATTCAGTGAACTCCTTCAAAGGATATGGAAAAGTAGACGAAGCTCAAGATTTAGCA TTGAAGAAAAAGACAAGAAAACGTCTACTTCTACTATCCATCTCCGTCGTAGTTCTCATC GCCGTAATAATCGCCGCCGTAGTCGCCACCGTCGTTCACAAGAACAAAAACGAGTCAACA CCGAGTCCACCTCCCGAGTTAACACCATCCACTTCACTCAAAGCCATTTGCAGTGTAACT CGTTTCCCTGAATCTTGCATTTCAAGTATCTCAAAGCTTCCATCTTCCAACACAACAGAT CCAGAGACTCTATTCAAGCTCTCATTGAAAGTAATCATCGATGAGCTTGATTCGATTTCC GATTTACCGGAGAAGCTATCGAAAGAGACTGAAGACGAAAGAATCAAATCTGCGTTAAGG GTTTGTGGAGATCTGATCGAAGATGCTTTAGATCGACTCAACGACACTGTTTCCGCCATT GATGACGAAGAAAAGAAGAAAACTTTGTCATCTTCCAAAATCGAAGATCTCAAAACTTGG CTAAGCGCAACGGTAACAGATCACGAGACGTGTTTCGATTCGTTAGATGAGTTGAAACAG AACAAAACAGAGTATGCGAACTCGACGATTACTCAGAATCTGAAATCGGCAATGAGTAGA TCAACGGAGTTCACAAGTAACAGTCTTGCAATAGTATCGAAGATTCTTTCTGCGTTAAGC GATTTGGGGATTCCGATACACAGGAGAAGAAGACTGATGAGTCATCATCATCAGCAAAGT GTGGATTTTGAGAAATGGGCACGACGGAGGTTGTTGCAAACGGCAGGTTTAAAGCCTGAT GTGACGGTGGCGGGTGATGGAACCGGTGATGTGTTGACTGTGAATGAAGCGGTGGCTAAG GTGCCGAAGAAGAGTTTGAAGATGTTTGTGATTTATGTGAAGAGTGGAACTTATGTTGAG AATGTTGTGATGGATAAGAGTAAATGGAACGTTATGATTTACGGTGACGGCAAAGGGAAG ACCATTATTTCCGGCAGCAAGAACTTCGTCGACGGGACTCCTACTTACGAAACGGCGACG TTTGCTATACAAGGCAAAGGATTTATAATGAAGGATATTGGAATCATAAACACCGCGGGA GCAGCAAAACACCAAGCTGTGGCATTCCGATCAGGCTCTGATTTCTCAGTCTATTACCAA TGCTCATTCGATGGTTTTCAAGACACTCTTTACCCTCACTCCAACCGCCAATTCTACCGT GACTGCGACGTTACTGGGACAATCGACTTCATTTTCGGAAGTGCTGCGGTCGTTTTCCAA GGCTGCAAAATCATGCCTCGCCAGCCTCTTTCTAACCAATTCAACACCATAACCGCTCAG GGCAAAAAAGATCCGAACCAAAGCTCGGGGATGTCGATTCAACGATGCACTATCTCCGCA AACGGCAATGTGATTGCTCCCACGTATCTTGGCCGGCCGTGGAAGGAGTTTTCCACGACG GTTATTATGGAGACGGTGATTGGAGCAGTGGTTCGACCGTCCGGGTGGATGTCATGGGTT TCTGGAGTTGATCCACCAGCAAGTATTGTCTACGGAGAGTATAAGAATACGGGCCCGGGT TCAGATGTAACGCAGAGAGTTAAATGGGCTGGATATAAACCGGTTATGTCGGACGCCGAG GCTGCGAAGTTTACAGTGGCTACGCTTTTACACGGAGCTGATTGGATACCGGCAACAGGA GTGATCAATCAGCTATCTTAA

Peptide Sequence

PEP ID	AT1G53840.1
PEP Infomation	\| pectin methylesterase 1 \| Chr1:20101533-20103458 FORWARD LENGTH=586 \| 201606
Sequence	MDSVNSFKGYGKVDEAQDLALKKKTRKRLLLLSISVVVLIAVIIAAVVATVVHKNKNEST PSPPPELTPSTSLKAICSVTRFPESCISSISKLPSSNTTDPETLFKLSLKVIIDELDSIS DLPEKLSKETEDERIKSALRVCGDLIEDALDRLNDTVSAIDDEEKKKTLSSSKIEDLKTW LSATVTDHETCFDSLDELKQNKTEYANSTITQNLKSAMSRSTEFTSNSLAIVSKILSALS DLGIPIHRRRRLMSHHHQQSVDFEKWARRRLLQTAGLKPDVTVAGDGTGDVLTVNEAVAK VPKKSLKMFVIYVKSGTYVENVVMDKSKWNVMIYGDGKGKTIISGSKNFVDGTPTYETAT FAIQGKGFIMKDIGIINTAGAAKHQAVAFRSGSDFSVYYQCSFDGFQDTLYPHSNRQFYR DCDVTGTIDFIFGSAAVVFQGCKIMPRQPLSNQFNTITAQGKKDPNQSSGMSIQRCTISA NGNVIAPTYLGRPWKEFSTTVIMETVIGAVVRPSGWMSWVSGVDPPASIVYGEYKNTGPG SDVTQRVKWAGYKPVMSDAEAAKFTVATLLHGADWIPATGVINQLS

Transcript Sequence

Transcript ID	AT1G53840.1
Transcript Infomation	\| pectin methylesterase 1 \| Chr1:20101299-20103690 FORWARD LENGTH=2227 \| 201606
Sequence	ACAACGTTATCATGAATCTTCACATGCAAGATCCTACACACACACTTAGACGACAAGAAG TCACCGTGGAACAAGCGCGTCACGTTCATCATTCACATTTACTTAATCCCACTTAAAAAG GCAAACAACAACATGTCTTCTCTAACATAAACAACAGAACATAACAAAGCCCAAACAATC TTAGTAATAATCCCAAAAACCAGAAAAAAAGGAGCTTTGCTTTTGTAGGAATTAATGGAT TCAGTGAACTCCTTCAAAGGATATGGAAAAGTAGACGAAGCTCAAGATTTAGCATTGAAG AAAAAGACAAGAAAACGTCTACTTCTACTATCCATCTCCGTCGTAGTTCTCATCGCCGTA ATAATCGCCGCCGTAGTCGCCACCGTCGTTCACAAGAACAAAAACGAGTCAACACCGAGT CCACCTCCCGAGTTAACACCATCCACTTCACTCAAAGCCATTTGCAGTGTAACTCGTTTC CCTGAATCTTGCATTTCAAGTATCTCAAAGCTTCCATCTTCCAACACAACAGATCCAGAG ACTCTATTCAAGCTCTCATTGAAAGTAATCATCGATGAGCTTGATTCGATTTCCGATTTA CCGGAGAAGCTATCGAAAGAGACTGAAGACGAAAGAATCAAATCTGCGTTAAGGGTTTGT GGAGATCTGATCGAAGATGCTTTAGATCGACTCAACGACACTGTTTCCGCCATTGATGAC GAAGAAAAGAAGAAAACTTTGTCATCTTCCAAAATCGAAGATCTCAAAACTTGGCTAAGC GCAACGGTAACAGATCACGAGACGTGTTTCGATTCGTTAGATGAGTTGAAACAGAACAAA ACAGAGTATGCGAACTCGACGATTACTCAGAATCTGAAATCGGCAATGAGTAGATCAACG GAGTTCACAAGTAACAGTCTTGCAATAGTATCGAAGATTCTTTCTGCGTTAAGCGATTTG GGGATTCCGATACACAGGAGAAGAAGACTGATGAGTCATCATCATCAGCAAAGTGTGGAT TTTGAGAAATGGGCACGACGGAGGTTGTTGCAAACGGCAGGTTTAAAGCCTGATGTGACG GTGGCGGGTGATGGAACCGGTGATGTGTTGACTGTGAATGAAGCGGTGGCTAAGGTGCCG AAGAAGAGTTTGAAGATGTTTGTGATTTATGTGAAGAGTGGAACTTATGTTGAGAATGTT GTGATGGATAAGAGTAAATGGAACGTTATGATTTACGGTGACGGCAAAGGGAAGACCATT ATTTCCGGCAGCAAGAACTTCGTCGACGGGACTCCTACTTACGAAACGGCGACGTTTGCT ATACAAGGCAAAGGATTTATAATGAAGGATATTGGAATCATAAACACCGCGGGAGCAGCA AAACACCAAGCTGTGGCATTCCGATCAGGCTCTGATTTCTCAGTCTATTACCAATGCTCA TTCGATGGTTTTCAAGACACTCTTTACCCTCACTCCAACCGCCAATTCTACCGTGACTGC GACGTTACTGGGACAATCGACTTCATTTTCGGAAGTGCTGCGGTCGTTTTCCAAGGCTGC AAAATCATGCCTCGCCAGCCTCTTTCTAACCAATTCAACACCATAACCGCTCAGGGCAAA AAAGATCCGAACCAAAGCTCGGGGATGTCGATTCAACGATGCACTATCTCCGCAAACGGC AATGTGATTGCTCCCACGTATCTTGGCCGGCCGTGGAAGGAGTTTTCCACGACGGTTATT ATGGAGACGGTGATTGGAGCAGTGGTTCGACCGTCCGGGTGGATGTCATGGGTTTCTGGA GTTGATCCACCAGCAAGTATTGTCTACGGAGAGTATAAGAATACGGGCCCGGGTTCAGAT GTAACGCAGAGAGTTAAATGGGCTGGATATAAACCGGTTATGTCGGACGCCGAGGCTGCG AAGTTTACAGTGGCTACGCTTTTACACGGAGCTGATTGGATACCGGCAACAGGAGTGATC AATCAGCTATCTTAATATAGTGACAATACAATTGGATTCGTAGCTTGTTTTTGAAAACAT CCGGTTGTGATCTACTTTATATTTGTTTGACACTTATGCATGATCTGTAATTTTTTCCAA CATAGTTGTATTTTGTGTATCCCCTAATACGATATCTTCTTGATGTAGAACTATCAAAGC TACTCGCTTTTTGTAGCTCACACCTTGAACTCGAATTATAACACAACGATGATACTGTTA CTAACCA