Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Arabidopsis thaliana ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Arabidopsis thaliana

CDS Sequence

CDS ID	AT1G30100.1
CDS Infomation	\| nine-cis-epoxycarotenoid dioxygenase 5 \| Chr1:10571383-10573152 FORWARD LENGTH=1770 \| 201606
Sequence	ATGGCTTGTTCTTACATATTAACACCAAACCCAACCAAACTCAATCTCTCCTTTGCACCC TCCGATCTCGACGCTCCTTCGCCGTCATCCTCCGTTAGTTTCACCAACACTAAACCAAGA CGCCGTAAACTCTCTGCAAACTCCGTCTCCGACACACCAAATCTACTGAATTTCCCAAAC TACCCTTCTCCAAACCCCATAATTCCCGAAAAAGACACTTCCCGTTGGAACCCTCTCCAA CGCGCCGCCTCCGCCGCACTCGACTTCGCCGAAACCGCATTGTTAAGACGCGAACGTTCT AAACCTCTCCCTAAAACAGTTGATCCTCGCCATCAGATCTCCGGTAACTACGCTCCGGTA CCGGAGCAATCCGTTAAATCATCTCTCTCCGTTGATGGAAAAATCCCTGACTGCATTGAC GGTGTTTACCTCCGTAACGGCGCTAATCCACTCTTCGAGCCAGTTTCTGGTCATCACCTA TTCGACGGTGACGGTATGGTTCACGCCGTTAAAATCACTAACGGAGACGCGAGTTACTCG TGCCGGTTTACGGAAACCGAGAGATTGGTTCAAGAGAAACAACTCGGTTCTCCGATTTTC CCTAAAGCTATAGGTGAGCTACATGGTCACTCTGGAATCGCACGGTTGATGCTATTTTAC GCACGTGGTTTATTCGGTTTATTAAATCACAAAAACGGAACCGGAGTTGCTAACGCCGGT TTGGTTTACTTCCACGACCGGTTATTAGCTATGTCTGAAGATGATCTACCTTACCAAGTT CGTGTCACTGACAATGGCGATTTAGAGACCATCGGAAGATTCGATTTCGACGGACAACTA AGCTCCGCCATGATCGCTCACCCGAAGATTGATCCGGTAACGAAGGAGCTATTTGCGTTG AGCTACGACGTCGTTAAGAAACCGTATTTGAAATACTTTAAATTCTCGCCGGAAGGTGAG AAATCACCGGACGTTGAGATTCCTCTCGCCAGTCCGACGATGATGCACGATTTCGCGATC ACTGAGAATTTCGTTGTGATTCCGGATCAACAAGTTGTGTTTAAGCTCTCCGATATGTTT CTTGGGAAATCTCCGGTTAAATACGACGGAGAGAAAATTTCCCGGTTTGGAATTTTGCCT AGAAACGCTAAAGATGCGTCGGAGATGGTTTGGGTTGAGTCACCGGAGACTTTTTGTTTC CATCTTTGGAACGCTTGGGAGTCACCGGAGACAGACGAGGTTGTAGTGATCGGATCTTGC ATGACTCCGGCGGATTCGATCTTCAACGAGTGCGATGAGCAGCTCAACAGTGTTTTATCA GAGATCCGGTTAAATCTCAAAACCGGGAAATCCACACGCAGAACTATAATTCCCGGTTCG GTTCAGATGAATCTTGAAGCTGGTATGGTAAACCGAAATCTTCTCGGGAGGAAAACCCGG TACGCATACCTAGCCATAGCTGAACCGTGGCCTAAAGTCTCAGGATTCGCTAAAGTTGAT CTTTCTACCGGAGAAGTGAAAAATCACTTTTACGGCGGTAAAAAATACGGTGGTGAACCT TTTTTCTTACCTAGAGGGTTAGAATCTGACGGAGAAGATGACGGTTACATTATGTCGTTT GTTCACGACGAGGAGAGTTGGGAATCGGAGCTTCATATTGTTAACGCCGTTACGTTGGAA CTAGAAGCAACCGTTAAATTGCCGTCAAGAGTACCGTATGGTTTCCACGGCACTTTCGTG AATTCGGCGGATATGTTAAACCAGGCTTAA

Peptide Sequence

PEP ID	AT1G30100.1
PEP Infomation	\| nine-cis-epoxycarotenoid dioxygenase 5 \| Chr1:10571383-10573152 FORWARD LENGTH=589 \| 201606
Sequence	MACSYILTPNPTKLNLSFAPSDLDAPSPSSSVSFTNTKPRRRKLSANSVSDTPNLLNFPN YPSPNPIIPEKDTSRWNPLQRAASAALDFAETALLRRERSKPLPKTVDPRHQISGNYAPV PEQSVKSSLSVDGKIPDCIDGVYLRNGANPLFEPVSGHHLFDGDGMVHAVKITNGDASYS CRFTETERLVQEKQLGSPIFPKAIGELHGHSGIARLMLFYARGLFGLLNHKNGTGVANAG LVYFHDRLLAMSEDDLPYQVRVTDNGDLETIGRFDFDGQLSSAMIAHPKIDPVTKELFAL SYDVVKKPYLKYFKFSPEGEKSPDVEIPLASPTMMHDFAITENFVVIPDQQVVFKLSDMF LGKSPVKYDGEKISRFGILPRNAKDASEMVWVESPETFCFHLWNAWESPETDEVVVIGSC MTPADSIFNECDEQLNSVLSEIRLNLKTGKSTRRTIIPGSVQMNLEAGMVNRNLLGRKTR YAYLAIAEPWPKVSGFAKVDLSTGEVKNHFYGGKKYGGEPFFLPRGLESDGEDDGYIMSF VHDEESWESELHIVNAVTLELEATVKLPSRVPYGFHGTFVNSADMLNQA

Transcript Sequence

Transcript ID	AT1G30100.1
Transcript Infomation	\| nine-cis-epoxycarotenoid dioxygenase 5 \| Chr1:10571310-10573365 FORWARD LENGTH=2056 \| 201606
Sequence	TATACTCAAAACTCTCTCTCCATCTCCAATACTCAAAATCTCTCGAGCTTCTTTTCTTAA GTCATTTGCTCTCATGGCTTGTTCTTACATATTAACACCAAACCCAACCAAACTCAATCT CTCCTTTGCACCCTCCGATCTCGACGCTCCTTCGCCGTCATCCTCCGTTAGTTTCACCAA CACTAAACCAAGACGCCGTAAACTCTCTGCAAACTCCGTCTCCGACACACCAAATCTACT GAATTTCCCAAACTACCCTTCTCCAAACCCCATAATTCCCGAAAAAGACACTTCCCGTTG GAACCCTCTCCAACGCGCCGCCTCCGCCGCACTCGACTTCGCCGAAACCGCATTGTTAAG ACGCGAACGTTCTAAACCTCTCCCTAAAACAGTTGATCCTCGCCATCAGATCTCCGGTAA CTACGCTCCGGTACCGGAGCAATCCGTTAAATCATCTCTCTCCGTTGATGGAAAAATCCC TGACTGCATTGACGGTGTTTACCTCCGTAACGGCGCTAATCCACTCTTCGAGCCAGTTTC TGGTCATCACCTATTCGACGGTGACGGTATGGTTCACGCCGTTAAAATCACTAACGGAGA CGCGAGTTACTCGTGCCGGTTTACGGAAACCGAGAGATTGGTTCAAGAGAAACAACTCGG TTCTCCGATTTTCCCTAAAGCTATAGGTGAGCTACATGGTCACTCTGGAATCGCACGGTT GATGCTATTTTACGCACGTGGTTTATTCGGTTTATTAAATCACAAAAACGGAACCGGAGT TGCTAACGCCGGTTTGGTTTACTTCCACGACCGGTTATTAGCTATGTCTGAAGATGATCT ACCTTACCAAGTTCGTGTCACTGACAATGGCGATTTAGAGACCATCGGAAGATTCGATTT CGACGGACAACTAAGCTCCGCCATGATCGCTCACCCGAAGATTGATCCGGTAACGAAGGA GCTATTTGCGTTGAGCTACGACGTCGTTAAGAAACCGTATTTGAAATACTTTAAATTCTC GCCGGAAGGTGAGAAATCACCGGACGTTGAGATTCCTCTCGCCAGTCCGACGATGATGCA CGATTTCGCGATCACTGAGAATTTCGTTGTGATTCCGGATCAACAAGTTGTGTTTAAGCT CTCCGATATGTTTCTTGGGAAATCTCCGGTTAAATACGACGGAGAGAAAATTTCCCGGTT TGGAATTTTGCCTAGAAACGCTAAAGATGCGTCGGAGATGGTTTGGGTTGAGTCACCGGA GACTTTTTGTTTCCATCTTTGGAACGCTTGGGAGTCACCGGAGACAGACGAGGTTGTAGT GATCGGATCTTGCATGACTCCGGCGGATTCGATCTTCAACGAGTGCGATGAGCAGCTCAA CAGTGTTTTATCAGAGATCCGGTTAAATCTCAAAACCGGGAAATCCACACGCAGAACTAT AATTCCCGGTTCGGTTCAGATGAATCTTGAAGCTGGTATGGTAAACCGAAATCTTCTCGG GAGGAAAACCCGGTACGCATACCTAGCCATAGCTGAACCGTGGCCTAAAGTCTCAGGATT CGCTAAAGTTGATCTTTCTACCGGAGAAGTGAAAAATCACTTTTACGGCGGTAAAAAATA CGGTGGTGAACCTTTTTTCTTACCTAGAGGGTTAGAATCTGACGGAGAAGATGACGGTTA CATTATGTCGTTTGTTCACGACGAGGAGAGTTGGGAATCGGAGCTTCATATTGTTAACGC CGTTACGTTGGAACTAGAAGCAACCGTTAAATTGCCGTCAAGAGTACCGTATGGTTTCCA CGGCACTTTCGTGAATTCGGCGGATATGTTAAACCAGGCTTAAACCAAAACCGGTTGCGG TTTGGTTTATTGTGCAGAGCCAGATTTTAGGGTTTTTTAAATTTGTTTATCAGGAGATAT TTTTGTGAAAACAAATAGATTTTTTTTTTTCGAAGCGGTGGGAGCCAGCTTGAAGCTTGT GTAAGTAGAAGTTTTGCTAGCTCAGCTGGTCTCTGTTGCATTTTTTTCTGGTTTATAAAT AAAATTAGTGAAGAGT