Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Arabidopsis thaliana

CDS Sequence

CDS ID

AT1G14470.1
CDS Infomation

| Pentatricopeptide repeat (PPR) superfamily protein | Chr1:4954080-4955702 FORWARD LENGTH=1623 | 201606
Sequence

ATGTCTCGAGAGCTCACTGTATCTCTTGCCGCCATAGCTTCACAAGCTCTAACATTTCCT
CAATTAAACCAAATCCATGCTCAGCTCATTGTATTCAATTCTCTTCCTCGACAAAGCTAC
TGGGCTTCGCGTATAATCAGCTGCTGCACGCGCCTCCGTGCGCCGTCTTACTACACGCGG
CTCATTTTCGATTCAGTGACATTCCCTAATGTCTTCGTTGTCAATTCCATGTTTAAATAC
TTCTCGAAGATGGATATGGCGAATGATGTTCTTCGTCTGTATGAACAAAGATCTCGTTGT
GGGATTATGCCTGACGCTTTTTCTTTCCCTGTTGTGATCAAATCGGCTGGGAGATTCGGG
ATTTTGTTTCAGGCCCTTGTTGAGAAGTTGGGATTTTTTAAGGACCCTTATGTGAGGAAT
GTGATAATGGATATGTATGTGAAGCATGAGTCAGTGGAGAGTGCACGCAAAGTGTTCGAT
CAAATTTCTCAGAGAAAGGGTTCTGACTGGAATGTGATGATTTCTGGGTATTGGAAATGG
GGAAACAAGGAGGAAGCTTGTAAGTTGTTCGATATGATGCCAGAGAATGATGTGGTTTCT
TGGACGGTGATGATTACTGGTTTTGCAAAGGTTAAGGATTTGGAAAATGCGAGGAAGTAT
TTTGATCGGATGCCGGAGAAGAGTGTTGTTTCTTGGAACGCTATGCTTTCAGGTTATGCT
CAAAATGGTTTTACAGAGGATGCTCTGAGATTGTTTAACGATATGTTGAGACTTGGAGTT
AGGCCAAATGAGACCACATGGGTCATTGTTATTTCCGCATGTTCTTTCCGTGCTGATCCT
TCCCTCACTCGTTCACTAGTAAAACTGATTGATGAGAAGAGAGTCCGTTTGAATTGCTTT
GTGAAGACAGCATTGCTTGATATGCATGCTAAGTGCAGAGATATTCAATCTGCTAGAAGA
ATTTTCAACGAGTTAGGTACGCAGAGGAATCTTGTGACTTGGAATGCTATGATATCTGGA
TACACTAGAATCGGGGATATGAGTTCGGCTAGGCAGCTTTTTGATACAATGCCTAAGCGA
AATGTTGTTTCTTGGAATTCTCTGATAGCTGGGTATGCTCACAACGGGCAAGCTGCACTA
GCCATTGAGTTTTTCGAAGATATGATTGATTATGGAGATTCCAAACCGGATGAAGTAACA
ATGATTAGTGTTCTCTCGGCTTGTGGACACATGGCTGATCTAGAATTGGGTGATTGCATT
GTAGATTACATTCGTAAGAACCAAATCAAGCTTAATGATTCAGGATACAGGTCTTTGATC
TTCATGTATGCTAGGGGTGGAAACCTGTGGGAAGCAAAACGGGTGTTTGACGAAATGAAG
GAAAGAGATGTTGTCTCTTATAACACTTTATTCACAGCTTTTGCAGCTAACGGAGACGGG
GTTGAAACGCTGAATTTACTCTCAAAGATGAAAGACGAAGGTATTGAGCCTGACCGTGTG
ACTTACACTAGTGTCTTGACGGCTTGTAACCGTGCAGGATTACTCAAAGAAGGCCAGAGA
ATATTCAAATCAATAAGAAATCCACTGGCGGATCATTATGCTTGTATGGATTTGTTGCGC
TGA

Peptide Sequence

PEP ID

AT1G14470.1
PEP Infomation

| Pentatricopeptide repeat (PPR) superfamily protein | Chr1:4954080-4955702 FORWARD LENGTH=540 | 201606
Sequence

MSRELTVSLAAIASQALTFPQLNQIHAQLIVFNSLPRQSYWASRIISCCTRLRAPSYYTR
LIFDSVTFPNVFVVNSMFKYFSKMDMANDVLRLYEQRSRCGIMPDAFSFPVVIKSAGRFG
ILFQALVEKLGFFKDPYVRNVIMDMYVKHESVESARKVFDQISQRKGSDWNVMISGYWKW
GNKEEACKLFDMMPENDVVSWTVMITGFAKVKDLENARKYFDRMPEKSVVSWNAMLSGYA
QNGFTEDALRLFNDMLRLGVRPNETTWVIVISACSFRADPSLTRSLVKLIDEKRVRLNCF
VKTALLDMHAKCRDIQSARRIFNELGTQRNLVTWNAMISGYTRIGDMSSARQLFDTMPKR
NVVSWNSLIAGYAHNGQAALAIEFFEDMIDYGDSKPDEVTMISVLSACGHMADLELGDCI
VDYIRKNQIKLNDSGYRSLIFMYARGGNLWEAKRVFDEMKERDVVSYNTLFTAFAANGDG
VETLNLLSKMKDEGIEPDRVTYTSVLTACNRAGLLKEGQRIFKSIRNPLADHYACMDLLR

Transcript Sequence

Transcript ID

AT1G14470.1
Transcript Infomation

| Pentatricopeptide repeat (PPR) superfamily protein | Chr1:4954037-4955702 FORWARD LENGTH=1666 | 201606
Sequence

CACGGAAACACTAACGAGGAAGAGAACGTGAAGCTATATATATATGTCTCGAGAGCTCAC
TGTATCTCTTGCCGCCATAGCTTCACAAGCTCTAACATTTCCTCAATTAAACCAAATCCA
TGCTCAGCTCATTGTATTCAATTCTCTTCCTCGACAAAGCTACTGGGCTTCGCGTATAAT
CAGCTGCTGCACGCGCCTCCGTGCGCCGTCTTACTACACGCGGCTCATTTTCGATTCAGT
GACATTCCCTAATGTCTTCGTTGTCAATTCCATGTTTAAATACTTCTCGAAGATGGATAT
GGCGAATGATGTTCTTCGTCTGTATGAACAAAGATCTCGTTGTGGGATTATGCCTGACGC
TTTTTCTTTCCCTGTTGTGATCAAATCGGCTGGGAGATTCGGGATTTTGTTTCAGGCCCT
TGTTGAGAAGTTGGGATTTTTTAAGGACCCTTATGTGAGGAATGTGATAATGGATATGTA
TGTGAAGCATGAGTCAGTGGAGAGTGCACGCAAAGTGTTCGATCAAATTTCTCAGAGAAA
GGGTTCTGACTGGAATGTGATGATTTCTGGGTATTGGAAATGGGGAAACAAGGAGGAAGC
TTGTAAGTTGTTCGATATGATGCCAGAGAATGATGTGGTTTCTTGGACGGTGATGATTAC
TGGTTTTGCAAAGGTTAAGGATTTGGAAAATGCGAGGAAGTATTTTGATCGGATGCCGGA
GAAGAGTGTTGTTTCTTGGAACGCTATGCTTTCAGGTTATGCTCAAAATGGTTTTACAGA
GGATGCTCTGAGATTGTTTAACGATATGTTGAGACTTGGAGTTAGGCCAAATGAGACCAC
ATGGGTCATTGTTATTTCCGCATGTTCTTTCCGTGCTGATCCTTCCCTCACTCGTTCACT
AGTAAAACTGATTGATGAGAAGAGAGTCCGTTTGAATTGCTTTGTGAAGACAGCATTGCT
TGATATGCATGCTAAGTGCAGAGATATTCAATCTGCTAGAAGAATTTTCAACGAGTTAGG
TACGCAGAGGAATCTTGTGACTTGGAATGCTATGATATCTGGATACACTAGAATCGGGGA
TATGAGTTCGGCTAGGCAGCTTTTTGATACAATGCCTAAGCGAAATGTTGTTTCTTGGAA
TTCTCTGATAGCTGGGTATGCTCACAACGGGCAAGCTGCACTAGCCATTGAGTTTTTCGA
AGATATGATTGATTATGGAGATTCCAAACCGGATGAAGTAACAATGATTAGTGTTCTCTC
GGCTTGTGGACACATGGCTGATCTAGAATTGGGTGATTGCATTGTAGATTACATTCGTAA
GAACCAAATCAAGCTTAATGATTCAGGATACAGGTCTTTGATCTTCATGTATGCTAGGGG
TGGAAACCTGTGGGAAGCAAAACGGGTGTTTGACGAAATGAAGGAAAGAGATGTTGTCTC
TTATAACACTTTATTCACAGCTTTTGCAGCTAACGGAGACGGGGTTGAAACGCTGAATTT
ACTCTCAAAGATGAAAGACGAAGGTATTGAGCCTGACCGTGTGACTTACACTAGTGTCTT
GACGGCTTGTAACCGTGCAGGATTACTCAAAGAAGGCCAGAGAATATTCAAATCAATAAG
AAATCCACTGGCGGATCATTATGCTTGTATGGATTTGTTGCGCTGA