Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Arabidopsis thaliana

CDS Sequence

CDS ID

AT1G04930.2
CDS Infomation

| hydroxyproline-rich glycoprotein family protein | Chr1:1396546-1398988 REVERSE LENGTH=1089 | 201606
Sequence

ATGTCAATTCCCGATCCCAACTCCTCCGCATCTCTAACGGTGTCTCCGTCTCTATCCACC
GCATCGGAAACTCCGGTAACACCAGTAAACACTGTTAGACCACCGCCGTCTCAGCCACCT
CCTGCTCCGCCGCCACTACCGCCGCCGACTTACAGACCCATAGCTCCGCTTCGCCACCCT
AATCCGTTCCAACAACAATCTGCTTATAGTAATAACCTCTACGCACATTCGATTCCGGTC
AGACGCCAAATTCAAGATCCGTCAGCTGTTCTTTACCCGTTTGCTCTACCGGGTCGAGGG
TTTTCAGCCCGACCTGTTCGAGGATTCGTCGCAGATCCTTCCGTGACGGCTGGTAATCTG
AGTGGGTACCCTCCTCGCCCGAGTTTTACTTACGATCCTGGACCATATGAGCAGCGTCAA
ATGGAATCCTTGTTGCAGCAGTTTATAAGGGAGAGAAATCCTCAGATTCGTCCATTACCA
CGCCTTGGATTGGGTTCTCCTGTTGGGTTGGGTCCCATTAGAGCAAGTCCTCAATTTCTG
CAACCGCGGCTAAGTAGTGGAAAGATTAGTGGGGAAAATGCTCGAGATGATCCAAAGTTT
CTTGATTGGAGTCTTAGTAGAACTGAATCTGACTGTACCGTTGCCCCGCCCCCAACTTCA
ATTCTAGACACTAGCAGGAATAGAAAGGCCAGAAGCAAGGATGGGGCTCTTGCCGTTGTT
AGAGGGAGAAAGGTCCGAATCACTGAGGGGTCTTCTTCTCTTTATTCACTTGGTCGATCG
TGGTTGAAAAATGGTGCTCACGTTGGAATTCAGCCGCAAAGGAGTGGTATAATGAAACCT
TTGCCAAAACCGTTACCTGTGGATTTAACAACAGAGACAAGTGTACCAGATGATCCAGAT
GAAGAATCAGCGGATGAAGACAAAGAGGACGAGGAAGCTGTAAAGCAATTATCTGAGAAG
GATCTTTTGAAAAGACACATCGAGCGAGCTAAGAAAGTCCGTGCACAATTACGAGAAGAA
CGGTCGAGGAGGATCAGGAGGTACAAAGAAAGAATAACTCTTATTCTGGCACAATCCGAA
GACCGATGA

Peptide Sequence

PEP ID

AT1G04930.2
PEP Infomation

| hydroxyproline-rich glycoprotein family protein | Chr1:1396546-1398988 REVERSE LENGTH=362 | 201606
Sequence

MSIPDPNSSASLTVSPSLSTASETPVTPVNTVRPPPSQPPPAPPPLPPPTYRPIAPLRHP
NPFQQQSAYSNNLYAHSIPVRRQIQDPSAVLYPFALPGRGFSARPVRGFVADPSVTAGNL
SGYPPRPSFTYDPGPYEQRQMESLLQQFIRERNPQIRPLPRLGLGSPVGLGPIRASPQFL
QPRLSSGKISGENARDDPKFLDWSLSRTESDCTVAPPPTSILDTSRNRKARSKDGALAVV
RGRKVRITEGSSSLYSLGRSWLKNGAHVGIQPQRSGIMKPLPKPLPVDLTTETSVPDDPD
EESADEDKEDEEAVKQLSEKDLLKRHIERAKKVRAQLREERSRRIRRYKERITLILAQSE
DR

Transcript Sequence

Transcript ID

AT1G04930.2
Transcript Infomation

| hydroxyproline-rich glycoprotein family protein | Chr1:1396291-1399053 REVERSE LENGTH=1409 | 201606
Sequence

TCTTTTTACTGTTTCCCCAAAAATTCTTTTGAAAATCGAATCGACAAATTCCTTCCGCCG
TCGGAATGTCAATTCCCGATCCCAACTCCTCCGCATCTCTAACGGTGTCTCCGTCTCTAT
CCACCGCATCGGAAACTCCGGTAACACCAGTAAACACTGTTAGACCACCGCCGTCTCAGC
CACCTCCTGCTCCGCCGCCACTACCGCCGCCGACTTACAGACCCATAGCTCCGCTTCGCC
ACCCTAATCCGTTCCAACAACAATCTGCTTATAGTAATAACCTCTACGCACATTCGATTC
CGGTCAGACGCCAAATTCAAGATCCGTCAGCTGTTCTTTACCCGTTTGCTCTACCGGGTC
GAGGGTTTTCAGCCCGACCTGTTCGAGGATTCGTCGCAGATCCTTCCGTGACGGCTGGTA
ATCTGAGTGGGTACCCTCCTCGCCCGAGTTTTACTTACGATCCTGGACCATATGAGCAGC
GTCAAATGGAATCCTTGTTGCAGCAGTTTATAAGGGAGAGAAATCCTCAGATTCGTCCAT
TACCACGCCTTGGATTGGGTTCTCCTGTTGGGTTGGGTCCCATTAGAGCAAGTCCTCAAT
TTCTGCAACCGCGGCTAAGTAGTGGAAAGATTAGTGGGGAAAATGCTCGAGATGATCCAA
AGTTTCTTGATTGGAGTCTTAGTAGAACTGAATCTGACTGTACCGTTGCCCCGCCCCCAA
CTTCAATTCTAGACACTAGCAGGAATAGAAAGGCCAGAAGCAAGGATGGGGCTCTTGCCG
TTGTTAGAGGGAGAAAGGTCCGAATCACTGAGGGGTCTTCTTCTCTTTATTCACTTGGTC
GATCGTGGTTGAAAAATGGTGCTCACGTTGGAATTCAGCCGCAAAGGAGTGGTATAATGA
AACCTTTGCCAAAACCGTTACCTGTGGATTTAACAACAGAGACAAGTGTACCAGATGATC
CAGATGAAGAATCAGCGGATGAAGACAAAGAGGACGAGGAAGCTGTAAAGCAATTATCTG
AGAAGGATCTTTTGAAAAGACACATCGAGCGAGCTAAGAAAGTCCGTGCACAATTACGAG
AAGAACGGTCGAGGAGGATCAGGAGGTACAAAGAAAGAATAACTCTTATTCTGGCACAAT
CCGAAGACCGATGATGCTTGAAGAACGACTAAAAAAGGGTAAAGTTTTGTTAGGAATTAG
CTTCATATGACTGTTGTTGATTTAGCATACTAGTACCACGTAACAACATACGTGTAGTAA
TAGTATAGGTGTGTTCTTCTTCGTCTTCTATAGATTAGTAGGACTACTCAATGAATAGTG
TTTCATTCTTCCTAAAACTAAAGAGGAAGATAAAATTGTTTCCTTAAAGTCAGCTTTTAC
TAATTTGACAATAAAAATTTCTTCTCTTA