Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_18s0001g14240.t01
CDS Infomation

cds chromosome:12X:18:12257459:12261168:1 gene:VIT_18s0001g14240 gene_biotype:protein_coding transcript_biotype:protein_coding description:AP complex subunit sigma [Source:UniProtKB/TrEMBL;Acc:E0CQ54]
Sequence

ATGATTACGTGGAAACCTTTATCACATACATCGCATTCGGAACGACGTCGTTTCCATAAA
GACAGCAAGGACGACCGTCATCGGATCTCGGAGGTTCACCGTTTGTTCTGTGTGCCTCTG
CAGCCAAGTCTTTGGAGAATGATCCGATTCATAATTCTACAGAACAGGCAGGGCAAGACC
CGCCTCGCCAAGTACTATGTTCCTCTTGAAGAATCCGAGAAGCACAAGGTCGAATACGAG
GTTCACCGATTGGTTGTCAACCGGGATCCCAAGTTCACTAACTTCGTTGAGTTCCGTACA
CACAAGGTAATCTACAGGCGATATGCTGGATTATTTTTCTCACTGTGTGTTGATATGACA
GATAATGAGTTGGCATATTTAGAGTGCATCCATCTGTTTGTGGAAATACTGGATCATTTC
TTCAGCAATGTGTGCGAGCTAGATTTGGTATTTAATTTCCACAAGGTTTATCTTATACTT
GACGAATTCATTCTTGCTGGGGAGCTCCAAGAAACAAGCAAAAAGGCCATCATAGAGAGG
ATGGGGGAATTGGAAAAGCAAGAGTGA

Peptide Sequence

PEP ID

VIT_18s0001g14240.t01
PEP Infomation

pep chromosome:12X:18:12257459:12261168:1 gene:VIT_18s0001g14240 transcript:VIT_18s0001g14240.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:AP complex subunit sigma [Source:UniProtKB/TrEMBL;Acc:E0CQ54]
Sequence

MITWKPLSHTSHSERRRFHKDSKDDRHRISEVHRLFCVPLQPSLWRMIRFIILQNRQGKT
RLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDMT
DNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIER
MGELEKQE

Transcript Sequence

Transcript ID

VIT_18s0001g14240.t01
Transcript Infomation

cdna chromosome:12X:18:12257459:12261168:1 gene:VIT_18s0001g14240 gene_biotype:protein_coding transcript_biotype:protein_coding description:AP complex subunit sigma [Source:UniProtKB/TrEMBL;Acc:E0CQ54]
Sequence

GGAATGTGAAAGACGCGATGGTGTAGATGATTACGTGGAAACCTTTATCACATACATCGC
ATTCGGAACGACGTCGTTTCCATAAAGACAGCAAGGACGACCGTCATCGGATCTCGGAGG
TTCACCGTTTGTTCTGTGTGCCTCTGCAGCCAAGTCTTTGGAGAATGATCCGATTCATAA
TTCTACAGAACAGGCAGGGCAAGACCCGCCTCGCCAAGTACTATGTTCCTCTTGAAGAAT
CCGAGAAGCACAAGGTCGAATACGAGGTTCACCGATTGGTTGTCAACCGGGATCCCAAGT
TCACTAACTTCGTTGAGTTCCGTACACACAAGGTAATCTACAGGCGATATGCTGGATTAT
TTTTCTCACTGTGTGTTGATATGACAGATAATGAGTTGGCATATTTAGAGTGCATCCATC
TGTTTGTGGAAATACTGGATCATTTCTTCAGCAATGTGTGCGAGCTAGATTTGGTATTTA
ATTTCCACAAGGTTTATCTTATACTTGACGAATTCATTCTTGCTGGGGAGCTCCAAGAAA
CAAGCAAAAAGGCCATCATAGAGAGGATGGGGGAATTGGAAAAGCAAGAGTGAGAACTTA
TTCTGTAGCAAGGATCTTTGGTTTTCTTGATTTTATTTTATTTTTCCCTAGTTTTGGATT
TTTATCCAATGTTGAAAGACACAGTTTCTCCATTATAAGATCAGAAAAATGAACTTTATT
GAGACAGATGGAGTT