Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_18s0001g14120.t01
CDS Infomation

cds chromosome:12X:18:12160472:12174229:-1 gene:VIT_18s0001g14120 gene_biotype:protein_coding transcript_biotype:protein_coding description:tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 [Source:UniProtKB/TrEMBL;Acc:E0CQ45]
Sequence

ATGTCGCAAAATAGCCTTCAAAACGATTCGATTCAAAACCCTAGAGTGACCTGGGAAGGC
TGCAGTGTGTTGCTCGACATCAACGACGGCGATCGTCTGGTTTTCGCTCGTCTCTCGGCC
TCCGCGACTTTGAAAATTGGGAATAAAAACTGCTCCTTGCAGCCGTTGATTGGCTGTCCC
TTCGGTTCTTTGTTTCAGGTTGATAACGGACCCAGAGGGCCGTATTTATCTCGTGTTACA
CCCTCTGCAGAAGGTAATGATCTTCAAGAAACACAAGATTGCCAATTAAAAGATGAACCC
AAAGATAATCGAGCAATAGTTGATAATAATAAAGCTCAGAGTCTTACTGGTGAAGATATA
GATGAAATGCGGAGACAGGGTGCAACAGGTGATGAAATAGTTGAAGCTCTCATTTCTAAC
AGTGCTACCTATGAGAAGAAAACATCATTCTCACAAGAAAAATATAGGCTTAAGAAACAA
AAGAAATATTCACCCAGAGTGCTTTTGAGGCGCCCTTTTTGTCGGAGTATATGTGAGGCT
TACTTCAAGAAATATCCAGCTAGAATCGGGTTCTTGCGAGTGGACACCTTGTCTCTTCTG
CTTTCCATGGCTAATATTGCTGCTCATTCGGATGTTCTTGTAGTGGATATGGTTGGTGGT
CTTCTTACTGGTGCTGTGGCAGAACGTTTAGGAGGTACAGGCTATGTCTGTAATGCATAT
CTTGGAGATACTCCGTACCCTATGGATATAGTGAGAATATTCAACTTCAGTAGTGAAATC
TGCAAAAGAATAGTGCGGTCTCCTGTAGATGGACTCCGTTCAATTCAAGATGGTACTTCT
GAGCAATTTTTTCAACATAAAGGTGTCTCTAACTCAGAAATTCAGTCAAATGAACAAATG
TCTTCCCAGGATTCTTTTCCCCATTCAATTAGCACCGAAGAAACCACTCTTTCATCTGAA
AATGGGATGCTGGATCTTATTCCTCAGATGGTGACTGCTTCTCCACCTCAGGTGGCCAAA
ACATGCAAAGCCACGAAAGCAGGAGAGAATGCATCCCTAGATGCCATTAACTTGTGGAAA
GAAAATGGTTTTTCTAGCCTATTAATTGCTGCTCCAGAGCTGGATGTGTGGAGCATAGTT
CAAGAATTCCTACCATTTTTATCATATTCAGCTTCCTTTGCAATTTATCATCAATATCTT
CAGCCTCTTGCAACATGCATGCACAATCTACAACTTGGGAAAATGGCAATTGGCTTACAA
ATTTCAGAACCATGGCTACGTGAATATCAGGTTCTTCCATCAAGAACCCACCCATGCATG
CAGATGAGTGCATTTGGTGGGTACATTCTAAGTGGGACAAGGATTTGCAGCAGTGACTCC
CAGATCCAAAAGTAG

Peptide Sequence

PEP ID

VIT_18s0001g14120.t01
PEP Infomation

pep chromosome:12X:18:12160472:12174229:-1 gene:VIT_18s0001g14120 transcript:VIT_18s0001g14120.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 [Source:UniProtKB/TrEMBL;Acc:E0CQ45]
Sequence

MSQNSLQNDSIQNPRVTWEGCSVLLDINDGDRLVFARLSASATLKIGNKNCSLQPLIGCP
FGSLFQVDNGPRGPYLSRVTPSAEGNDLQETQDCQLKDEPKDNRAIVDNNKAQSLTGEDI
DEMRRQGATGDEIVEALISNSATYEKKTSFSQEKYRLKKQKKYSPRVLLRRPFCRSICEA
YFKKYPARIGFLRVDTLSLLLSMANIAAHSDVLVVDMVGGLLTGAVAERLGGTGYVCNAY
LGDTPYPMDIVRIFNFSSEICKRIVRSPVDGLRSIQDGTSEQFFQHKGVSNSEIQSNEQM
SSQDSFPHSISTEETTLSSENGMLDLIPQMVTASPPQVAKTCKATKAGENASLDAINLWK
ENGFSSLLIAAPELDVWSIVQEFLPFLSYSASFAIYHQYLQPLATCMHNLQLGKMAIGLQ
ISEPWLREYQVLPSRTHPCMQMSAFGGYILSGTRICSSDSQIQK

Transcript Sequence

Transcript ID

VIT_18s0001g14120.t01
Transcript Infomation

cdna chromosome:12X:18:12160472:12174229:-1 gene:VIT_18s0001g14120 gene_biotype:protein_coding transcript_biotype:protein_coding description:tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 [Source:UniProtKB/TrEMBL;Acc:E0CQ45]
Sequence

AGGGCGCTTGCAAGCACTTCGATAAAACCCCAGTTGCAAAACCCTAATTTCAAATCCAAT
ACAAATTCCCGATTCTTCTGTTGTATCTTTGTTCAATTGTTTTTTCTTCACTGTCATAAC
AACACGAACTTAAACAAAACAAAAAATGTCGCAAAATAGCCTTCAAAACGATTCGATTCA
AAACCCTAGAGTGACCTGGGAAGGCTGCAGTGTGTTGCTCGACATCAACGACGGCGATCG
TCTGGTTTTCGCTCGTCTCTCGGCCTCCGCGACTTTGAAAATTGGGAATAAAAACTGCTC
CTTGCAGCCGTTGATTGGCTGTCCCTTCGGTTCTTTGTTTCAGGTTGATAACGGACCCAG
AGGGCCGTATTTATCTCGTGTTACACCCTCTGCAGAAGGTAATGATCTTCAAGAAACACA
AGATTGCCAATTAAAAGATGAACCCAAAGATAATCGAGCAATAGTTGATAATAATAAAGC
TCAGAGTCTTACTGGTGAAGATATAGATGAAATGCGGAGACAGGGTGCAACAGGTGATGA
AATAGTTGAAGCTCTCATTTCTAACAGTGCTACCTATGAGAAGAAAACATCATTCTCACA
AGAAAAATATAGGCTTAAGAAACAAAAGAAATATTCACCCAGAGTGCTTTTGAGGCGCCC
TTTTTGTCGGAGTATATGTGAGGCTTACTTCAAGAAATATCCAGCTAGAATCGGGTTCTT
GCGAGTGGACACCTTGTCTCTTCTGCTTTCCATGGCTAATATTGCTGCTCATTCGGATGT
TCTTGTAGTGGATATGGTTGGTGGTCTTCTTACTGGTGCTGTGGCAGAACGTTTAGGAGG
TACAGGCTATGTCTGTAATGCATATCTTGGAGATACTCCGTACCCTATGGATATAGTGAG
AATATTCAACTTCAGTAGTGAAATCTGCAAAAGAATAGTGCGGTCTCCTGTAGATGGACT
CCGTTCAATTCAAGATGGTACTTCTGAGCAATTTTTTCAACATAAAGGTGTCTCTAACTC
AGAAATTCAGTCAAATGAACAAATGTCTTCCCAGGATTCTTTTCCCCATTCAATTAGCAC
CGAAGAAACCACTCTTTCATCTGAAAATGGGATGCTGGATCTTATTCCTCAGATGGTGAC
TGCTTCTCCACCTCAGGTGGCCAAAACATGCAAAGCCACGAAAGCAGGAGAGAATGCATC
CCTAGATGCCATTAACTTGTGGAAAGAAAATGGTTTTTCTAGCCTATTAATTGCTGCTCC
AGAGCTGGATGTGTGGAGCATAGTTCAAGAATTCCTACCATTTTTATCATATTCAGCTTC
CTTTGCAATTTATCATCAATATCTTCAGCCTCTTGCAACATGCATGCACAATCTACAACT
TGGGAAAATGGCAATTGGCTTACAAATTTCAGAACCATGGCTACGTGAATATCAGGTTCT
TCCATCAAGAACCCACCCATGCATGCAGATGAGTGCATTTGGTGGGTACATTCTAAGTGG
GACAAGGATTTGCAGCAGTGACTCCCAGATCCAAAAGTAGTAATGCTTACATCTTGTTAG
TCTATCACCTTAAATTAGTTTCAACTTGGCAGGAAAAAGGCCTGCATCCCAGA