Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_18s0001g05770.t01
CDS Infomation

cds chromosome:12X:18_random:4473614:4500652:1 gene:VIT_18s0001g05770 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein phosphatase methylesterase 1 [Source:UniProtKB/TrEMBL;Acc:D7TLE9]
Sequence

ATGGATTCTTCAAACCTAGGTTCACTCCCAGAAGAGGGTTCGGAAGAAGAACCGCAACCA
ACCCAAACTAAACCCGCCTCTGCCTTCTCCTCCATTCCTCATCGCCCTCCATCTCAGACT
TCTCTACAGAAGTACGCTCCTTTGGAGTGGTCGGCTTATTTTGATCAAGAGGATGATGTT
TGCATTCCTGACTCAAATGATGTATTTCACGTGTATATGGCAGGAACAGAAGGGCCAGTT
GTCTTTTGTCTACATGGAGGTGGTTATTCTGGGCTTTCTTTCGCACTGGCAGCAAGTAAA
ATTAAGGAGAAAGCTCGGGTAGTAGCTATGGATTTGAGAGGACATGGGAAGTCATCCACT
GAAAATGAGTTAGACCTATCAATTGAGACCCTTTGCAATGATGTTTTAGCTGTTTTGAAG
AAAATGTATGGAGATTCTCCTCCTGCAATTGTGCTTGTTGGCCACAGCATGGGAGGTTCA
GTTGCTGTCCATCTTGCTGCAAAGAAAGTACTGTCTAGCTTGTGTGGATTGGTGGTTGTG
GATGTTGTAGAGGGAACGGCGATGGCTTCCTTGATTCATATGCAGAAAATCCTCTCAAGC
AGGATGCAGCATTTTTCAACCCTTGAAAAAGCGATTGAATGGAGTGTTAAAGGAGGCTCT
TTAAGAAACATTGAGTCTGCCCGTGTATCTATCCCCAGCACATTAAAGTATGATGATTCA
AAGGAATGTTACACTTACCGAACAAGGCTGGAAAAGACAGAAGAATATTGGAGAGGCTGG
TATGAAGGCCTTTCTGACAAATTTCTGTCTTCTCCCATTCCAAAGCTCCTACTGTTAGCT
GGAACAGACAGACTGGACAGATCCCTCACAATAGGTCAAATGCAAGGAAAATTTCAAATG
GTGGTTGTCAGACACTCAGGGCATGCTATACAGGAAGATGAACCTGATGAATTTGCTAAT
CTCATAGTTAATTTTATTTCTCGCAATCGAATTGGCCCTAAAGGTGTTGAGATACCTGGA
CTCCTTAGAGCATCAAAGCCTCAATCTTAA

Peptide Sequence

PEP ID

VIT_18s0001g05770.t01
PEP Infomation

pep chromosome:12X:18_random:4473614:4500652:1 gene:VIT_18s0001g05770 transcript:VIT_18s0001g05770.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein phosphatase methylesterase 1 [Source:UniProtKB/TrEMBL;Acc:D7TLE9]
Sequence

MDSSNLGSLPEEGSEEEPQPTQTKPASAFSSIPHRPPSQTSLQKYAPLEWSAYFDQEDDV
CIPDSNDVFHVYMAGTEGPVVFCLHGGGYSGLSFALAASKIKEKARVVAMDLRGHGKSST
ENELDLSIETLCNDVLAVLKKMYGDSPPAIVLVGHSMGGSVAVHLAAKKVLSSLCGLVVV
DVVEGTAMASLIHMQKILSSRMQHFSTLEKAIEWSVKGGSLRNIESARVSIPSTLKYDDS
KECYTYRTRLEKTEEYWRGWYEGLSDKFLSSPIPKLLLLAGTDRLDRSLTIGQMQGKFQM
VVVRHSGHAIQEDEPDEFANLIVNFISRNRIGPKGVEIPGLLRASKPQS

Transcript Sequence

Transcript ID

VIT_18s0001g05770.t01
Transcript Infomation

cdna chromosome:12X:18_random:4473614:4500652:1 gene:VIT_18s0001g05770 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein phosphatase methylesterase 1 [Source:UniProtKB/TrEMBL;Acc:D7TLE9]
Sequence

AGCCGAACCCACCAATCCGGACCCAGCCGATCAGACAAAGAGAAAACATAGAAACATCCA
ACAGCTGAGCAATCGCCCCAGATTTTGCTTTCATTTCCTGAAAACGAGTCTCAGAATTCA
GCAGAGTAGCTTTTGGATTTGGATCAATGGATTCTTCAAACCTAGGTTCACTCCCAGAAG
AGGGTTCGGAAGAAGAACCGCAACCAACCCAAACTAAACCCGCCTCTGCCTTCTCCTCCA
TTCCTCATCGCCCTCCATCTCAGACTTCTCTACAGAAGTACGCTCCTTTGGAGTGGTCGG
CTTATTTTGATCAAGAGGATGATGTTTGCATTCCTGACTCAAATGATGTATTTCACGTGT
ATATGGCAGGAACAGAAGGGCCAGTTGTCTTTTGTCTACATGGAGGTGGTTATTCTGGGC
TTTCTTTCGCACTGGCAGCAAGTAAAATTAAGGAGAAAGCTCGGGTAGTAGCTATGGATT
TGAGAGGACATGGGAAGTCATCCACTGAAAATGAGTTAGACCTATCAATTGAGACCCTTT
GCAATGATGTTTTAGCTGTTTTGAAGAAAATGTATGGAGATTCTCCTCCTGCAATTGTGC
TTGTTGGCCACAGCATGGGAGGTTCAGTTGCTGTCCATCTTGCTGCAAAGAAAGTACTGT
CTAGCTTGTGTGGATTGGTGGTTGTGGATGTTGTAGAGGGAACGGCGATGGCTTCCTTGA
TTCATATGCAGAAAATCCTCTCAAGCAGGATGCAGCATTTTTCAACCCTTGAAAAAGCGA
TTGAATGGAGTGTTAAAGGAGGCTCTTTAAGAAACATTGAGTCTGCCCGTGTATCTATCC
CCAGCACATTAAAGTATGATGATTCAAAGGAATGTTACACTTACCGAACAAGGCTGGAAA
AGACAGAAGAATATTGGAGAGGCTGGTATGAAGGCCTTTCTGACAAATTTCTGTCTTCTC
CCATTCCAAAGCTCCTACTGTTAGCTGGAACAGACAGACTGGACAGATCCCTCACAATAG
GTCAAATGCAAGGAAAATTTCAAATGGTGGTTGTCAGACACTCAGGGCATGCTATACAGG
AAGATGAACCTGATGAATTTGCTAATCTCATAGTTAATTTTATTTCTCGCAATCGAATTG
GCCCTAAAGGTGTTGAGATACCTGGACTCCTTAGAGCATCAAAGCCTCAATCTTAAAGTC
CATGTTGGAGAACTCAAAGATTACAGCCCCACCACGGTGACTAACAAATTTCATAACCCA
TCTCTCTAGTGTTTGTATGCAATGGATTGTTCTTCTTCTACTACTACAGCTGTGTTTGAT
AGATTCCTTTCAGAATTTCTAAATTTTGGAGCTACATCATATATGTCCAAGCTTTATCAA
TATTTTACC