Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_17s0000g09970.t01
CDS Infomation

cds chromosome:12X:17:11958389:11967008:1 gene:VIT_17s0000g09970 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA-(apurinic or apyrimidinic site) lyase [Source:UniProtKB/TrEMBL;Acc:D7SHC6]
Sequence

ATGAAGCGATACTTCCAACCAATTGGGAAGGATGGCTCCTCCAAGAAACCCTCTCTCTCA
AAAGAAGATGGCGATGAGAACACAGACCAGGTTTCAGAGGAGGAGAAGAAGGAGCCATTA
AAGTTCTTGACATGGAATGCCAACAGTTTTCTTATTCGAGTCAAGAACAACTGGCCCGAA
TTCACCAAGTTTGTTTCTGATCTTGATCCTGATGTCATTGCTGTACAGGAAGTAAGGATG
CCAGCAGCTGGCTCCAAGGGTGCTCCTAAAAACCATGGAGAGTTAAAAGATGATACAAGC
TCATCACGTGAGGAAAAGAAGATATTAATGCATGCCCTTTCCAGACCTCCATTTGGAAAT
TATCGTGTTTGGTGGTCTCTTGCAGATTCCAAATATGCAGGGACTGCATTGTTTGTTAAG
AAGTGTTTTCAACCAAAAAAGGTCTCTTTCTCTATTGATCAAAAAGCTTCAAAGCATGAG
CCTGAAGGTCGGGTTATTTTGGCTGAATTCGAGTCTTTCCGCCTATTGAATACATATGTG
CCAAATAACGGTTGGAAAGATGAGGAAACATCATTTCAGAGGAGAAGAAAATGGGATAAG
AGGATGCTTGAATTTGTTGTGCAATCTTCTGATAAGCCTCTTATTTGGTGTGGCGATCTG
AATGTTAGTCACGAAGAGATTGATGTGAGCCATCCAGAATTCTTCAGTGCAGCAAAGCAC
AATGGATATGTTCCTCCAAATAAAGAGGACTGTGGGCAGCCTGGATTTACCTTGGCTGAG
AGGAGGCGTTTTGGTGGCATATTGAAAGAGGGGAAGCTAGTAGATGCATACAGACTCCTA
CACAAGGAAAAAGACATGGAAGGTGGCTTCTCATGGTCTGGAAACCCTATTGGAAAGTAT
AGAGGGAAGAGGATGAGAATAGACTATTTCATAGTTCCAGAGGCACTCAAAGATAGGATT
GTTGCATGTGAGATCCATGGACAGGGGATTGAATTAAAAGGTTTCTACGGAAGTGACCAT
TGCCCGGTTTCCCTGGAGCTTTCCGAGACAAGCTCCGGTTCCAACCAAAGCTAA

Peptide Sequence

PEP ID

VIT_17s0000g09970.t01
PEP Infomation

pep chromosome:12X:17:11958389:11967008:1 gene:VIT_17s0000g09970 transcript:VIT_17s0000g09970.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA-(apurinic or apyrimidinic site) lyase [Source:UniProtKB/TrEMBL;Acc:D7SHC6]
Sequence

MKRYFQPIGKDGSSKKPSLSKEDGDENTDQVSEEEKKEPLKFLTWNANSFLIRVKNNWPE
FTKFVSDLDPDVIAVQEVRMPAAGSKGAPKNHGELKDDTSSSREEKKILMHALSRPPFGN
YRVWWSLADSKYAGTALFVKKCFQPKKVSFSIDQKASKHEPEGRVILAEFESFRLLNTYV
PNNGWKDEETSFQRRRKWDKRMLEFVVQSSDKPLIWCGDLNVSHEEIDVSHPEFFSAAKH
NGYVPPNKEDCGQPGFTLAERRRFGGILKEGKLVDAYRLLHKEKDMEGGFSWSGNPIGKY
RGKRMRIDYFIVPEALKDRIVACEIHGQGIELKGFYGSDHCPVSLELSETSSGSNQS

Transcript Sequence

Transcript ID

VIT_17s0000g09970.t01
Transcript Infomation

cdna chromosome:12X:17:11958389:11967008:1 gene:VIT_17s0000g09970 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA-(apurinic or apyrimidinic site) lyase [Source:UniProtKB/TrEMBL;Acc:D7SHC6]
Sequence

TGAGTGATGAAGCGATACTTCCAACCAATTGGGAAGGATGGCTCCTCCAAGAAACCCTCT
CTCTCAAAAGAAGATGGCGATGAGAACACAGACCAGGTTTCAGAGGAGGAGAAGAAGGAG
CCATTAAAGTTCTTGACATGGAATGCCAACAGTTTTCTTATTCGAGTCAAGAACAACTGG
CCCGAATTCACCAAGTTTGTTTCTGATCTTGATCCTGATGTCATTGCTGTACAGGAAGTA
AGGATGCCAGCAGCTGGCTCCAAGGGTGCTCCTAAAAACCATGGAGAGTTAAAAGATGAT
ACAAGCTCATCACGTGAGGAAAAGAAGATATTAATGCATGCCCTTTCCAGACCTCCATTT
GGAAATTATCGTGTTTGGTGGTCTCTTGCAGATTCCAAATATGCAGGGACTGCATTGTTT
GTTAAGAAGTGTTTTCAACCAAAAAAGGTCTCTTTCTCTATTGATCAAAAAGCTTCAAAG
CATGAGCCTGAAGGTCGGGTTATTTTGGCTGAATTCGAGTCTTTCCGCCTATTGAATACA
TATGTGCCAAATAACGGTTGGAAAGATGAGGAAACATCATTTCAGAGGAGAAGAAAATGG
GATAAGAGGATGCTTGAATTTGTTGTGCAATCTTCTGATAAGCCTCTTATTTGGTGTGGC
GATCTGAATGTTAGTCACGAAGAGATTGATGTGAGCCATCCAGAATTCTTCAGTGCAGCA
AAGCACAATGGATATGTTCCTCCAAATAAAGAGGACTGTGGGCAGCCTGGATTTACCTTG
GCTGAGAGGAGGCGTTTTGGTGGCATATTGAAAGAGGGGAAGCTAGTAGATGCATACAGA
CTCCTACACAAGGAAAAAGACATGGAAGGTGGCTTCTCATGGTCTGGAAACCCTATTGGA
AAGTATAGAGGGAAGAGGATGAGAATAGACTATTTCATAGTTCCAGAGGCACTCAAAGAT
AGGATTGTTGCATGTGAGATCCATGGACAGGGGATTGAATTAAAAGGTTTCTACGGAAGT
GACCATTGCCCGGTTTCCCTGGAGCTTTCCGAGACAAGCTCCGGTTCCAACCAAAGCTAA
GTTTTGCTTTGATTAACATTTGAGGGTCATGTACTGGATTCCCTACAACATTATACTAGT
AATCTTTGATCAACATTTTGCATTATGGATAATTGAATGGAATCGGTTTAGGCAATTTTC
AAACACCA