Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_17s0000g09890.t01
CDS Infomation

cds chromosome:12X:17:11826668:11853074:1 gene:VIT_17s0000g09890 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGTCGGAACCGGCGGCGACCAAACCGCAGCCACTCCCTATAAAATCTGAAGTCGGTGTC
ACAGAGAACTCGGCCGACGAGAGCTCGAAGCGGCCGCAGATTTCCAAAGTGGTGGTTTTA
GCCGACCTCAACGTCGACCCTCCTGAGACTGACGACGACGATTCCCTCCACGTCTCCGCT
CCCGATCTCACCAGGTTGACCAATGATGATAGCAGTCAAGATAAAAGTACCTTAGTGAGC
AAAGACACAGATATGGTGGATGGAGAAGGTAAACGGTTAAACAAATTGGGGAAGCCCCGT
TCAAGAGTTACTAAGGTGGAGTACCCTCTTGATTATGGGGCTGATGCAGATGCTGACCAG
CATGGTCAAGGGGCTCCCACATCCCGTGAGGAAAAAGTCAGCAGTCTTAAGACCGGTTTG
GTACATGTAGCAAGGAAGATGCCCAAAAATGCTCATGCTCATTTTATACTTGGATTAATG
TATCAGAGGTTGGGTCAGCCACAAAAGGCAGTTTCTGCATATGAGAAGGCAGCAGAGATC
TTGCTCCGCTGTGAAGAAGAGATTGACAGGCCAGAGTTGCTTTCACTAGTTCAGATTCAT
CATGCACAGTGCCTTCTTCTAGGAAGTTCAGGTGATCATAGCGCAGACAAAGAACTTGAA
CCTGAAGAATTGGAGGAAATTCTTTTGAAAATGAAGGATTCAATGCAATCAGATATTAGA
CAGGCGGCTGTGTGGAATACTCTCGGCTTAATACTTCTTAGAACTGGCCGTCTGCAGAAT
GCTATTTCGGTTTTGTCATCTTTGTTGACCATTGCTCCAGACAACTTGGATTGCCTTGGA
AACCTTGGAATTGCTTACCTTAGAAGTGGGAATTTGGAGCTTGCAGAAAAATGTTTTCAG
AATTTGATTTTGAAAGATCAAAATCATCCTGCTGCTCTAATCAACTATGCTGCAGTTCTA
ATGTGTAAATATGGCTCGATCATTGCAGGTGCTGGGGCAAATTCTGGTGAAGGAGCTTCT
GAGGATCAGCTTATAGCTGCCAATGTTGCAAAAGAGTGTTTGTTAGCAGCAGTAAAAGTG
GAACCCAAAGCAGCACATGTTTGGGCAAATCTCGCAAATGCTTATTATTTGATGGGTGAT
TGTAGAAGTTCTAGCAAGTGCTTCGAGAAGGCAGCAAAACTAGAGCCCAATTGTATGTCT
ACACGATATGCTGTTGCAGTCCACCAAATCAAGGATGCAGAAAGATATCAAGATCCTAGT
GAACAGCTTTCCTGGGCTGGAAATGAAATGGCTTCTATACTAAGAGAAGGAGATTCTGCT
CTCATTGAGCATCCCATAGCATGGGCAGGGCTTGCCATGGTTCATAAGATCCAGAATGAA
ATTGCAGCAGCATTTGAAACTGAGCATAAAGGGTTGATGGAGATGGAAGAGCGTGCTGTA
CACATTTTAAAGCAGGCAATAGCAGAGGACCCAGATGATGCTGTACAGTGGCACCAGCTT
GGTCTTCATAATCTTTGTGTTCAACAATTCAAGACATCACAAAAGTACCTCAAGGCTGCA
GTTGCCCGTTCTAAGGAATGCAGCTATATGTGGTCCAATCTTGGTATCTCACTGCAGTTA
TCAGAGGAGCCAGCGCAGGCAGAACAAGTATACAAGCGAGCCTTGTCCTTGGTGACCCCT
CAGCAGGCATATACAATATTTTCCAACCTTGGGAATCTATATAGGCAACAAAAGAAGTAC
CAATCTGCAAAAGCAATGTTTACAAAGTCACTCGAACTCCAACCCGGTTATGCTCCTGCA
TATAACAATCTAGGTCTGGTATTCATTGCTGAGGGTCGGTGGAAGGAAGCCGAATTCTGC
TTCAACAAGGCCCTCCAGGCAGACCCACTGCTGGATGCGGCCAAGTCCAACATGATCAAA
GCAGCGGCCATGTCCAGAGTCTGTCAGCATCTCTCCTCATGTTCGCTTCAAGATTGA

Peptide Sequence

PEP ID

VIT_17s0000g09890.t01
PEP Infomation

pep chromosome:12X:17:11826668:11853074:1 gene:VIT_17s0000g09890 transcript:VIT_17s0000g09890.t01 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MSEPAATKPQPLPIKSEVGVTENSADESSKRPQISKVVVLADLNVDPPETDDDDSLHVSA
PDLTRLTNDDSSQDKSTLVSKDTDMVDGEGKRLNKLGKPRSRVTKVEYPLDYGADADADQ
HGQGAPTSREEKVSSLKTGLVHVARKMPKNAHAHFILGLMYQRLGQPQKAVSAYEKAAEI
LLRCEEEIDRPELLSLVQIHHAQCLLLGSSGDHSADKELEPEELEEILLKMKDSMQSDIR
QAAVWNTLGLILLRTGRLQNAISVLSSLLTIAPDNLDCLGNLGIAYLRSGNLELAEKCFQ
NLILKDQNHPAALINYAAVLMCKYGSIIAGAGANSGEGASEDQLIAANVAKECLLAAVKV
EPKAAHVWANLANAYYLMGDCRSSSKCFEKAAKLEPNCMSTRYAVAVHQIKDAERYQDPS
EQLSWAGNEMASILREGDSALIEHPIAWAGLAMVHKIQNEIAAAFETEHKGLMEMEERAV
HILKQAIAEDPDDAVQWHQLGLHNLCVQQFKTSQKYLKAAVARSKECSYMWSNLGISLQL
SEEPAQAEQVYKRALSLVTPQQAYTIFSNLGNLYRQQKKYQSAKAMFTKSLELQPGYAPA
YNNLGLVFIAEGRWKEAEFCFNKALQADPLLDAAKSNMIKAAAMSRVCQHLSSCSLQD

Transcript Sequence

Transcript ID

VIT_17s0000g09890.t01
Transcript Infomation

cdna chromosome:12X:17:11826668:11853074:1 gene:VIT_17s0000g09890 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

AGGAAAAAAATAAATAAATAAATAAAATGTCGGAACCGGCGGCGACCAAACCGCAGCCAC
TCCCTATAAAATCTGAAGTCGGTGTCACAGAGAACTCGGCCGACGAGAGCTCGAAGCGGC
CGCAGATTTCCAAAGTGGTGGTTTTAGCCGACCTCAACGTCGACCCTCCTGAGACTGACG
ACGACGATTCCCTCCACGTCTCCGCTCCCGATCTCACCAGGTTGACCAATGATGATAGCA
GTCAAGATAAAAGTACCTTAGTGAGCAAAGACACAGATATGGTGGATGGAGAAGGTAAAC
GGTTAAACAAATTGGGGAAGCCCCGTTCAAGAGTTACTAAGGTGGAGTACCCTCTTGATT
ATGGGGCTGATGCAGATGCTGACCAGCATGGTCAAGGGGCTCCCACATCCCGTGAGGAAA
AAGTCAGCAGTCTTAAGACCGGTTTGGTACATGTAGCAAGGAAGATGCCCAAAAATGCTC
ATGCTCATTTTATACTTGGATTAATGTATCAGAGGTTGGGTCAGCCACAAAAGGCAGTTT
CTGCATATGAGAAGGCAGCAGAGATCTTGCTCCGCTGTGAAGAAGAGATTGACAGGCCAG
AGTTGCTTTCACTAGTTCAGATTCATCATGCACAGTGCCTTCTTCTAGGAAGTTCAGGTG
ATCATAGCGCAGACAAAGAACTTGAACCTGAAGAATTGGAGGAAATTCTTTTGAAAATGA
AGGATTCAATGCAATCAGATATTAGACAGGCGGCTGTGTGGAATACTCTCGGCTTAATAC
TTCTTAGAACTGGCCGTCTGCAGAATGCTATTTCGGTTTTGTCATCTTTGTTGACCATTG
CTCCAGACAACTTGGATTGCCTTGGAAACCTTGGAATTGCTTACCTTAGAAGTGGGAATT
TGGAGCTTGCAGAAAAATGTTTTCAGAATTTGATTTTGAAAGATCAAAATCATCCTGCTG
CTCTAATCAACTATGCTGCAGTTCTAATGTGTAAATATGGCTCGATCATTGCAGGTGCTG
GGGCAAATTCTGGTGAAGGAGCTTCTGAGGATCAGCTTATAGCTGCCAATGTTGCAAAAG
AGTGTTTGTTAGCAGCAGTAAAAGTGGAACCCAAAGCAGCACATGTTTGGGCAAATCTCG
CAAATGCTTATTATTTGATGGGTGATTGTAGAAGTTCTAGCAAGTGCTTCGAGAAGGCAG
CAAAACTAGAGCCCAATTGTATGTCTACACGATATGCTGTTGCAGTCCACCAAATCAAGG
ATGCAGAAAGATATCAAGATCCTAGTGAACAGCTTTCCTGGGCTGGAAATGAAATGGCTT
CTATACTAAGAGAAGGAGATTCTGCTCTCATTGAGCATCCCATAGCATGGGCAGGGCTTG
CCATGGTTCATAAGATCCAGAATGAAATTGCAGCAGCATTTGAAACTGAGCATAAAGGGT
TGATGGAGATGGAAGAGCGTGCTGTACACATTTTAAAGCAGGCAATAGCAGAGGACCCAG
ATGATGCTGTACAGTGGCACCAGCTTGGTCTTCATAATCTTTGTGTTCAACAATTCAAGA
CATCACAAAAGTACCTCAAGGCTGCAGTTGCCCGTTCTAAGGAATGCAGCTATATGTGGT
CCAATCTTGGTATCTCACTGCAGTTATCAGAGGAGCCAGCGCAGGCAGAACAAGTATACA
AGCGAGCCTTGTCCTTGGTGACCCCTCAGCAGGCATATACAATATTTTCCAACCTTGGGA
ATCTATATAGGCAACAAAAGAAGTACCAATCTGCAAAAGCAATGTTTACAAAGTCACTCG
AACTCCAACCCGGTTATGCTCCTGCATATAACAATCTAGGTCTGGTATTCATTGCTGAGG
GTCGGTGGAAGGAAGCCGAATTCTGCTTCAACAAGGCCCTCCAGGCAGACCCACTGCTGG
ATGCGGCCAAGTCCAACATGATCAAAGCAGCGGCCATGTCCAGAGTCTGTCAGCATCTCT
CCTCATGTTCGCTTCAAGATTGATTTCCCTAAGGTCATTAACTTTCCTCAATCCTGAAAC
TAGGATTGTAAAATCTCACATCATGCATCAGAAT