Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_17s0000g04450.t01
CDS Infomation

cds chromosome:12X:17:4702527:4708871:1 gene:VIT_17s0000g04450 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phospholipid-transporting ATPase [Source:UniProtKB/TrEMBL;Acc:F6GTG7]
Sequence

ATGGCTGGTGGGAGAAGAAAAAGGCAACACTTCGGTAGAATCCATGCCTTCTCATGTGGG
AGAGCATCATTCAATGGTGAACACTCACTGATTGGAGGTCCTGGCTTCTCCAGGATAGTC
TTCTGTAATGACCCAGAGTGCTTTGAGGCCGGTCAGCTCAAATATGGAGGCAACTATGTC
AGAACTACAAAGTACACACTTGCAACATACTTTCCAAAAGCACTTTTTGAGCAGTTCAGG
CGGGTGGCGAACATATATTTCCTCATCTGTGCAATCTTGTCTTTCACCGCCCTCTCACCT
TACTCTGCTTTCAGTACTGTTTTTCCTCTTGTTGTTGTGGTGGGAGTGACAATGGGGAAG
GAAGCTGTGGAAGATTGGAGGCGAAAAAGGCAGGATATTGAGATGAACAACAGGAAGGTT
AAATACCATCGCGGTGATGGTGTTTTTGATTATGCTAAATGGATGGATTTGAAAGTTGGA
GATGTAGTGAAAGTGGAAAAGGATGAATTTTTCCCTGCTGATCTCATATTGCTTTCATCA
AGTTACGACGATGCGATTTGCTATGTTGAGACTACAAATCTTGATGGAGAAACCAATTTG
AAACTAAAACAAGCACTCGATGTAACTGCAAACTTACTTGATGACTCTAGGTTTGAAAAT
TTCAGGGCAATCATTAAATGTGAAGATCCAAATGCAAATTTGTACTCCTTTGTTGGAAAT
TTGCAGCTGGAAGAACAACAGTTCCCTCTTACACCTCAGCAGCTTCTGCTAAGGGACTCA
AAGCTACGAAACACAGATTATATCTATGGGGTGGTCATCTTCACAGGGCATGACACAAAG
GTTATTCAAAATTCAACAGCACCTCCATCAAAGAGAAGCAAAATTGAGAGAAGAATGGAT
AAACTGGTTTACCTTTTGTTTTCTGCATTAGTCTTTCTGTCTTTCATTGGGTCCGTTTTC
TTTGGGATTACAACTAGCGAGGACCTAGAAAATGGAGTGATGACAAGATGGTATCTGAGG
CCAGATGATACTACAATTTACTATGATCCAAAAAGAGCTCCAGTTGCAGCAATTTTGCAT
TTTTTGACTGCCCTTATGCTGTATGGATACTTGATCCCCATTTCCTTGTATGTGTCAATA
GAAATTGTGAAAGTTCTCCAGAGTGTTTTCATCAATCAGGATCCGCACATGTACTATGAG
GAAGGTGACAAGCCAGCACGAGCACGTACCTCAAATTTGAATGAGGAGCTTGGCCAAGTT
GATACTATACTTTCTGATAAAACAGGAACCTTGACTTGCAACTCAATGGAATTTATCAAG
TGTTCTATTGCTGGGACTGCTTATGGCCGTGGAATTACAGAGGTTGAAAGGGCTCAGGCT
AGGGGGAAAGAGACGCCTTTAGCTCAGGAGGTTGTAGAAGACAAGGACAATGTTGAGGAG
ATTACTGAAACAAAGCCTTCCATTAAAGGGTATAATTTTATTGATGAAAGGATCACAAAT
GGTAACTGGGTTAATGAGCCTCGCGCAGATGTCATTCAGAATTTCTTAAGGTTGCTGGCA
GTCTGTCATACTGCCATACCTGAAGTGGATGATGAAACAGGGAAAATCTCCTATGAAGCT
GAATCACCAGATGAGGCAGCATTTGTTATTGGAGCAAGAGAACTGGGGTTTGAATTTTAT
GAAAGAACTCAAACGAGCATCTCGCTGCATGAGTTGGATCCTATGTCTGGCAGAAAGGTT
GCAAGGACATACAAACTTATGAACATCATAGAATTCAGTAGTGCGAGAAAGCGGATGTCT
GTGATTGTAAGAAATGAGGAGGGAAGGCTGCTGCTACTTTCTAAAGGTGCTGACAGTGTC
ATGTTTGAGAGACTTGCTCAAGATGGAAGAGAGTTTGAAGTACAGACCAGGCTGCACATT
AATGAGTATGCTGATGCTGGCTTGAGGACTTTGGTACTTGCATATCGAGAACTTGATGAC
GAAGAATACAATGAGTTCAACGAGGAATTCTCTCAAGCCAAGAACTTAGTCAGTGCAGAT
CGTGAGGAGATTATCGAGGAAGTGGCAGAAAGGATTGAGAAAGACTTGATTCTTCTTGGT
GCTACTGCTGTTGAAGACAAACTCCAAAATGGGGTTCCTGAGTGCATTGACAAGCTTGCA
CAAGCTGGAATAAAATTGTGGGTTCTGACTGGAGATAAGATGGAGACTGCAATAAATATT
GGGTTTGCCTGTAGTTTGCTTAGACAAGGAATGAAGCAAATAATAATAAATTCCGAAACT
CCAGGAATTAAAGCACTGGAGAAAGCAGGGGATAAGTCTGCTGTTGATGAGGCAGCGAAG
GCGAATGTCATTCAACAGATAAGTGAGGGTAAGGCACTGCTTAACATAGCAAGTGAAGAC
TCCGAGGCATTGGCTTTGATCATTGATGGGAAGTCACTCATTTATGCTCTGGAGGACGAT
GTCAAAGACATGTTTCTAGAGCTAGCCATTGGCTGTGCATCTGTTATATGCTGCCGCTCA
TCACCTAAACAGAAAGCACTTGTTACAAGGCTGGTTAAAGTAAAAACAGGGAGCACAACA
TTAGCAATTGGTGATGGGGCAAATGATGTTGGAATGCTTCAAGAAGCAGATATTGGGGTT
GGTATCAGTGGGGTTGAAGGAATGCAGGCAGTTATGTCAAGTGACATCGCAATTGCACAG
TTCCGGTTTTTGGAGCGCTTGCTACTTGTGCATGGACACTGGTGTTATAGAAGGATCTCG
TCTATGATATGCTATTTCTTCTACAAAAACATTGCATTTGGATTTACACTCTTCTTCTTT
GAAGCATATGCTTCATTCTCTGGTCAAGCTGCCTACAATGATTGGTACTTGTCGCTCTAT
AACGTCTTCTTCACATCACTTCCTGTGATTGCCATGGGAGTGTTTGATCAAGACGTTGCT
GCGCGCTTTTGTCTCAAGTTCCCTCTGCTATACCAAGAAGGTGTACAGAATGTGCTATTC
AGCTGGACCAGAATCCTTGGCTGGGCATTTAATGGGGTTTTGAGCTCCACCTTGATTTTC
TTCTTCTGTGCCTGTGCAATGGAGCATCAAGCCTTCCGCAAAGGCGGGGAGGTGGTTGGC
ATGGAAATCTTTGGGGCAGTAATGTATACATGTGTGGTATGGGTTGTGAACTGTCAGATG
GCACTCTCCATCAACTATTTCACACTAATTCAGCATGTCTTCATCTGGGGTAGCATTGTT
TTTTGGTATATATTCCTCTTGGTATATGGGGCCATGGACCCCAACATCTCCACGACCGCC
TACCAGGTCTTCATTGAAGCCTGTGCACCAGCTCTATCTTTCTGGCTTGTCACACTCTTT
GTAACTGTTGCCACCCTCCTTCCATACTTCAGTTATGCTGCCATTCAAATGAGGTTTTTC
CCCATGTATCATCAGATGATTCAATGGATAAGAAATGACGGACACTCTGAGGACCCTGAG
TATTGCCAAATGGTAAGGCAGAGATCATTGCGATCCACAACACTCCATGTTGACATTCTC
AATTTGGATTTTAAGAAATTTATGTTCTCCTTTTCTTTTCCTCTTCTCAGCAACCAGACA
GGGGACCTTCACTGCTAA

Peptide Sequence

PEP ID

VIT_17s0000g04450.t01
PEP Infomation

pep chromosome:12X:17:4702527:4708871:1 gene:VIT_17s0000g04450 transcript:VIT_17s0000g04450.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phospholipid-transporting ATPase [Source:UniProtKB/TrEMBL;Acc:F6GTG7]
Sequence

MAGGRRKRQHFGRIHAFSCGRASFNGEHSLIGGPGFSRIVFCNDPECFEAGQLKYGGNYV
RTTKYTLATYFPKALFEQFRRVANIYFLICAILSFTALSPYSAFSTVFPLVVVVGVTMGK
EAVEDWRRKRQDIEMNNRKVKYHRGDGVFDYAKWMDLKVGDVVKVEKDEFFPADLILLSS
SYDDAICYVETTNLDGETNLKLKQALDVTANLLDDSRFENFRAIIKCEDPNANLYSFVGN
LQLEEQQFPLTPQQLLLRDSKLRNTDYIYGVVIFTGHDTKVIQNSTAPPSKRSKIERRMD
KLVYLLFSALVFLSFIGSVFFGITTSEDLENGVMTRWYLRPDDTTIYYDPKRAPVAAILH
FLTALMLYGYLIPISLYVSIEIVKVLQSVFINQDPHMYYEEGDKPARARTSNLNEELGQV
DTILSDKTGTLTCNSMEFIKCSIAGTAYGRGITEVERAQARGKETPLAQEVVEDKDNVEE
ITETKPSIKGYNFIDERITNGNWVNEPRADVIQNFLRLLAVCHTAIPEVDDETGKISYEA
ESPDEAAFVIGARELGFEFYERTQTSISLHELDPMSGRKVARTYKLMNIIEFSSARKRMS
VIVRNEEGRLLLLSKGADSVMFERLAQDGREFEVQTRLHINEYADAGLRTLVLAYRELDD
EEYNEFNEEFSQAKNLVSADREEIIEEVAERIEKDLILLGATAVEDKLQNGVPECIDKLA
QAGIKLWVLTGDKMETAINIGFACSLLRQGMKQIIINSETPGIKALEKAGDKSAVDEAAK
ANVIQQISEGKALLNIASEDSEALALIIDGKSLIYALEDDVKDMFLELAIGCASVICCRS
SPKQKALVTRLVKVKTGSTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSDIAIAQ
FRFLERLLLVHGHWCYRRISSMICYFFYKNIAFGFTLFFFEAYASFSGQAAYNDWYLSLY
NVFFTSLPVIAMGVFDQDVAARFCLKFPLLYQEGVQNVLFSWTRILGWAFNGVLSSTLIF
FFCACAMEHQAFRKGGEVVGMEIFGAVMYTCVVWVVNCQMALSINYFTLIQHVFIWGSIV
FWYIFLLVYGAMDPNISTTAYQVFIEACAPALSFWLVTLFVTVATLLPYFSYAAIQMRFF
PMYHQMIQWIRNDGHSEDPEYCQMVRQRSLRSTTLHVDILNLDFKKFMFSFSFPLLSNQT
GDLHC

Transcript Sequence

Transcript ID

VIT_17s0000g04450.t01
Transcript Infomation

cdna chromosome:12X:17:4702527:4708871:1 gene:VIT_17s0000g04450 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phospholipid-transporting ATPase [Source:UniProtKB/TrEMBL;Acc:F6GTG7]
Sequence

GATTATGGTTGCATAGAATGGCTGGTGGGAGAAGAAAAAGGCAACACTTCGGTAGAATCC
ATGCCTTCTCATGTGGGAGAGCATCATTCAATGGTGAACACTCACTGATTGGAGGTCCTG
GCTTCTCCAGGATAGTCTTCTGTAATGACCCAGAGTGCTTTGAGGCCGGTCAGCTCAAAT
ATGGAGGCAACTATGTCAGAACTACAAAGTACACACTTGCAACATACTTTCCAAAAGCAC
TTTTTGAGCAGTTCAGGCGGGTGGCGAACATATATTTCCTCATCTGTGCAATCTTGTCTT
TCACCGCCCTCTCACCTTACTCTGCTTTCAGTACTGTTTTTCCTCTTGTTGTTGTGGTGG
GAGTGACAATGGGGAAGGAAGCTGTGGAAGATTGGAGGCGAAAAAGGCAGGATATTGAGA
TGAACAACAGGAAGGTTAAATACCATCGCGGTGATGGTGTTTTTGATTATGCTAAATGGA
TGGATTTGAAAGTTGGAGATGTAGTGAAAGTGGAAAAGGATGAATTTTTCCCTGCTGATC
TCATATTGCTTTCATCAAGTTACGACGATGCGATTTGCTATGTTGAGACTACAAATCTTG
ATGGAGAAACCAATTTGAAACTAAAACAAGCACTCGATGTAACTGCAAACTTACTTGATG
ACTCTAGGTTTGAAAATTTCAGGGCAATCATTAAATGTGAAGATCCAAATGCAAATTTGT
ACTCCTTTGTTGGAAATTTGCAGCTGGAAGAACAACAGTTCCCTCTTACACCTCAGCAGC
TTCTGCTAAGGGACTCAAAGCTACGAAACACAGATTATATCTATGGGGTGGTCATCTTCA
CAGGGCATGACACAAAGGTTATTCAAAATTCAACAGCACCTCCATCAAAGAGAAGCAAAA
TTGAGAGAAGAATGGATAAACTGGTTTACCTTTTGTTTTCTGCATTAGTCTTTCTGTCTT
TCATTGGGTCCGTTTTCTTTGGGATTACAACTAGCGAGGACCTAGAAAATGGAGTGATGA
CAAGATGGTATCTGAGGCCAGATGATACTACAATTTACTATGATCCAAAAAGAGCTCCAG
TTGCAGCAATTTTGCATTTTTTGACTGCCCTTATGCTGTATGGATACTTGATCCCCATTT
CCTTGTATGTGTCAATAGAAATTGTGAAAGTTCTCCAGAGTGTTTTCATCAATCAGGATC
CGCACATGTACTATGAGGAAGGTGACAAGCCAGCACGAGCACGTACCTCAAATTTGAATG
AGGAGCTTGGCCAAGTTGATACTATACTTTCTGATAAAACAGGAACCTTGACTTGCAACT
CAATGGAATTTATCAAGTGTTCTATTGCTGGGACTGCTTATGGCCGTGGAATTACAGAGG
TTGAAAGGGCTCAGGCTAGGGGGAAAGAGACGCCTTTAGCTCAGGAGGTTGTAGAAGACA
AGGACAATGTTGAGGAGATTACTGAAACAAAGCCTTCCATTAAAGGGTATAATTTTATTG
ATGAAAGGATCACAAATGGTAACTGGGTTAATGAGCCTCGCGCAGATGTCATTCAGAATT
TCTTAAGGTTGCTGGCAGTCTGTCATACTGCCATACCTGAAGTGGATGATGAAACAGGGA
AAATCTCCTATGAAGCTGAATCACCAGATGAGGCAGCATTTGTTATTGGAGCAAGAGAAC
TGGGGTTTGAATTTTATGAAAGAACTCAAACGAGCATCTCGCTGCATGAGTTGGATCCTA
TGTCTGGCAGAAAGGTTGCAAGGACATACAAACTTATGAACATCATAGAATTCAGTAGTG
CGAGAAAGCGGATGTCTGTGATTGTAAGAAATGAGGAGGGAAGGCTGCTGCTACTTTCTA
AAGGTGCTGACAGTGTCATGTTTGAGAGACTTGCTCAAGATGGAAGAGAGTTTGAAGTAC
AGACCAGGCTGCACATTAATGAGTATGCTGATGCTGGCTTGAGGACTTTGGTACTTGCAT
ATCGAGAACTTGATGACGAAGAATACAATGAGTTCAACGAGGAATTCTCTCAAGCCAAGA
ACTTAGTCAGTGCAGATCGTGAGGAGATTATCGAGGAAGTGGCAGAAAGGATTGAGAAAG
ACTTGATTCTTCTTGGTGCTACTGCTGTTGAAGACAAACTCCAAAATGGGGTTCCTGAGT
GCATTGACAAGCTTGCACAAGCTGGAATAAAATTGTGGGTTCTGACTGGAGATAAGATGG
AGACTGCAATAAATATTGGGTTTGCCTGTAGTTTGCTTAGACAAGGAATGAAGCAAATAA
TAATAAATTCCGAAACTCCAGGAATTAAAGCACTGGAGAAAGCAGGGGATAAGTCTGCTG
TTGATGAGGCAGCGAAGGCGAATGTCATTCAACAGATAAGTGAGGGTAAGGCACTGCTTA
ACATAGCAAGTGAAGACTCCGAGGCATTGGCTTTGATCATTGATGGGAAGTCACTCATTT
ATGCTCTGGAGGACGATGTCAAAGACATGTTTCTAGAGCTAGCCATTGGCTGTGCATCTG
TTATATGCTGCCGCTCATCACCTAAACAGAAAGCACTTGTTACAAGGCTGGTTAAAGTAA
AAACAGGGAGCACAACATTAGCAATTGGTGATGGGGCAAATGATGTTGGAATGCTTCAAG
AAGCAGATATTGGGGTTGGTATCAGTGGGGTTGAAGGAATGCAGGCAGTTATGTCAAGTG
ACATCGCAATTGCACAGTTCCGGTTTTTGGAGCGCTTGCTACTTGTGCATGGACACTGGT
GTTATAGAAGGATCTCGTCTATGATATGCTATTTCTTCTACAAAAACATTGCATTTGGAT
TTACACTCTTCTTCTTTGAAGCATATGCTTCATTCTCTGGTCAAGCTGCCTACAATGATT
GGTACTTGTCGCTCTATAACGTCTTCTTCACATCACTTCCTGTGATTGCCATGGGAGTGT
TTGATCAAGACGTTGCTGCGCGCTTTTGTCTCAAGTTCCCTCTGCTATACCAAGAAGGTG
TACAGAATGTGCTATTCAGCTGGACCAGAATCCTTGGCTGGGCATTTAATGGGGTTTTGA
GCTCCACCTTGATTTTCTTCTTCTGTGCCTGTGCAATGGAGCATCAAGCCTTCCGCAAAG
GCGGGGAGGTGGTTGGCATGGAAATCTTTGGGGCAGTAATGTATACATGTGTGGTATGGG
TTGTGAACTGTCAGATGGCACTCTCCATCAACTATTTCACACTAATTCAGCATGTCTTCA
TCTGGGGTAGCATTGTTTTTTGGTATATATTCCTCTTGGTATATGGGGCCATGGACCCCA
ACATCTCCACGACCGCCTACCAGGTCTTCATTGAAGCCTGTGCACCAGCTCTATCTTTCT
GGCTTGTCACACTCTTTGTAACTGTTGCCACCCTCCTTCCATACTTCAGTTATGCTGCCA
TTCAAATGAGGTTTTTCCCCATGTATCATCAGATGATTCAATGGATAAGAAATGACGGAC
ACTCTGAGGACCCTGAGTATTGCCAAATGGTAAGGCAGAGATCATTGCGATCCACAACAC
TCCATGTTGACATTCTCAATTTGGATTTTAAGAAATTTATGTTCTCCTTTTCTTTTCCTC
TTCTCAGCAACCAGACAGGGGACCTTCACTGCTAA