Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_16s0100g00640.t01
CDS Infomation

cds chromosome:12X:16:16123183:16126365:-1 gene:VIT_16s0100g00640 gene_biotype:protein_coding transcript_biotype:protein_coding description:Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:D7TMU9]
Sequence

ATGCCTCCAAGTGAAGATCTTGAAAGCAGGGGAGCCAAAAACAGGGGAGGCAGCTACACA
TCGTCTTCTGTGATTGAAGATTCGGAGACCCAATGGACTTCATGGCTTGTGCCCATGTTT
GTCGTGGCCAACGTTGCTGTTTTTGTCGTTGCCATGTATATTAATAATTGCCCCAAGGAG
AATTCTAGGGTTCAAGGCAAGTGTGTGGCGGGGTTTCTTGGGAGGTTCTCGTTTCAGCCT
CTGAAGGAGAATCCTCTGTTTGGCCCTTCTTCCAAGACATTGGAAAAGTTGGGAGCTCTT
GAGTGGAAAAAAGTTGTCAGTAAGCATCAAGGATGGAGGCTTGTCACTTGCATCTGGTTA
CATGCTGGTATCATTCATCTGCTTGTAAACATGTTGAGCTTGGTCTTGATTGGTATTCGA
CTCGAACAGCAATTTGGTTTTGTGCGGATAGGAGTAATTTACCTGTTGTCAGGATTTGGA
GGGAGTGTTCTTTCATCTCTATTTATTCAAAATAGCATCTCTGTTGGGGCTTCTGGTGCT
CTTTTTGGGCTTTTGGGAGCAATGCTTTCAGAGCTTATTACAAACTGGTCCATGTATACA
AACAGGGCTGCAGCACTACTCACACTCTTGGTCATTGTTGCGGTTAATCTAACCGTTGGG
ATTCTGCCACGTGTCAATAATTTTGCCCATATTGGTGGGTTCGTGACAGGTTTCTTCCTG
GGCTTTATTTTGATGCCTCGACCTCAGTTTGGGTGGATAGAGGGTCGGAACCTTCCAGCT
GATGTCCGTGTCAAATCCAAATACAAGGCCTACCAATATGTGTGCTGGCTGGTTTCTCTT
GTTCTGCTGATTGCAGGATTTACAGTTGGATTAGTGATGCTGTACAAGGGAAAGAATGGG
AGTGAACACTGCCATTGGTGTCACTACCTCAGCTGTGTCCCAACCTCTAGCTGGAAATGC
GATGAGACTCAATTTTAG

Peptide Sequence

PEP ID

VIT_16s0100g00640.t01
PEP Infomation

pep chromosome:12X:16:16123183:16126365:-1 gene:VIT_16s0100g00640 transcript:VIT_16s0100g00640.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:D7TMU9]
Sequence

MPPSEDLESRGAKNRGGSYTSSSVIEDSETQWTSWLVPMFVVANVAVFVVAMYINNCPKE
NSRVQGKCVAGFLGRFSFQPLKENPLFGPSSKTLEKLGALEWKKVVSKHQGWRLVTCIWL
HAGIIHLLVNMLSLVLIGIRLEQQFGFVRIGVIYLLSGFGGSVLSSLFIQNSISVGASGA
LFGLLGAMLSELITNWSMYTNRAAALLTLLVIVAVNLTVGILPRVNNFAHIGGFVTGFFL
GFILMPRPQFGWIEGRNLPADVRVKSKYKAYQYVCWLVSLVLLIAGFTVGLVMLYKGKNG
SEHCHWCHYLSCVPTSSWKCDETQF

Transcript Sequence

Transcript ID

VIT_16s0100g00640.t01
Transcript Infomation

cdna chromosome:12X:16:16123183:16126365:-1 gene:VIT_16s0100g00640 gene_biotype:protein_coding transcript_biotype:protein_coding description:Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:D7TMU9]
Sequence

CTCTCTCTCTACTGTCTCTCTCTCTCATTAAACCCTTCACCAACTGCACCGAATCTTCTG
TATCCTTCTTCTCTCACGTGTATTCTAGAGAGAGAAAGAGTTGTAGAGTGAGAAACCTAT
AGTTGAATTGTGAAAAAACAGGGGAATAGCCATGCCTCCAAGTGAAGATCTTGAAAGCAG
GGGAGCCAAAAACAGGGGAGGCAGCTACACATCGTCTTCTGTGATTGAAGATTCGGAGAC
CCAATGGACTTCATGGCTTGTGCCCATGTTTGTCGTGGCCAACGTTGCTGTTTTTGTCGT
TGCCATGTATATTAATAATTGCCCCAAGGAGAATTCTAGGGTTCAAGGCAAGTGTGTGGC
GGGGTTTCTTGGGAGGTTCTCGTTTCAGCCTCTGAAGGAGAATCCTCTGTTTGGCCCTTC
TTCCAAGACATTGGAAAAGTTGGGAGCTCTTGAGTGGAAAAAAGTTGTCAGTAAGCATCA
AGGATGGAGGCTTGTCACTTGCATCTGGTTACATGCTGGTATCATTCATCTGCTTGTAAA
CATGTTGAGCTTGGTCTTGATTGGTATTCGACTCGAACAGCAATTTGGTTTTGTGCGGAT
AGGAGTAATTTACCTGTTGTCAGGATTTGGAGGGAGTGTTCTTTCATCTCTATTTATTCA
AAATAGCATCTCTGTTGGGGCTTCTGGTGCTCTTTTTGGGCTTTTGGGAGCAATGCTTTC
AGAGCTTATTACAAACTGGTCCATGTATACAAACAGGGCTGCAGCACTACTCACACTCTT
GGTCATTGTTGCGGTTAATCTAACCGTTGGGATTCTGCCACGTGTCAATAATTTTGCCCA
TATTGGTGGGTTCGTGACAGGTTTCTTCCTGGGCTTTATTTTGATGCCTCGACCTCAGTT
TGGGTGGATAGAGGGTCGGAACCTTCCAGCTGATGTCCGTGTCAAATCCAAATACAAGGC
CTACCAATATGTGTGCTGGCTGGTTTCTCTTGTTCTGCTGATTGCAGGATTTACAGTTGG
ATTAGTGATGCTGTACAAGGGAAAGAATGGGAGTGAACACTGCCATTGGTGTCACTACCT
CAGCTGTGTCCCAACCTCTAGCTGGAAATGCGATGAGACTCAATTTTAGGAGGGGTCCCT
CTCTCTCTCTCTCTCTGTCCCTGTCCCTGTCCCTATCTTTGCTAGTGTGTAAATTGCATA
GTGATAGCTTCAGTAGATAGAGCCTAAACCAAGTTTCAAGTTGTTGGCTTGTTTTGATGT
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