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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_16s0039g02680.t01
CDS Infomation

cds chromosome:12X:16:3057352:3063054:1 gene:VIT_16s0039g02680 gene_biotype:protein_coding transcript_biotype:protein_coding description:U6 snRNA phosphodiesterase [Source:UniProtKB/TrEMBL;Acc:A5BG02]
Sequence

ATGGATGCTCTGAGAGCTTCGTACGCCAATAGTTGCTCCGACTCCGAATCCGATTCCGAC
ACGCCGCGGCCAACAAACGAGAACCATCAAGCGTCGGGGCCTCTGCCTCCGCCGCCTCTT
GCACTCCTCAGCCCACCTAATTCTCTCGGGGAATTAAATTACTCACAAACTGCTCAGTCA
GGTAGAGTAAGGAGCTTTCCTCATGTTGAAGGAAACTATGCTTTACATGTGTTCATACCA
GTTTATATACCATCTTCACCAAAGAAGGAGCTGGTCCAGTATTTGAAGAAGGTCATGTCT
CTAGTGCCTGGTCTTCATGTTGTTGACGTGGATATACCACTTAACATTCTATGCAAAGAT
GATAACAAGCTTGAACAAGTTGCATTAGGAAGGGAGTTTCATATAAGTTTAGGAAGAACT
GTTCCAATCCGAGTTCACCAGATTGACTCGATAGTGACAATGCTCCGCCAGAAGCTTCAA
TTTCAGAGGCGGTATTGGATTGACTTTAATAAGTGGGAGGTTTTTGTCAATGATGATCAG
ACACGCTCCTTTCTTTCAGTAGAAGTTATTGCTGGAGGCTTAGCTGAGATAACACGGCAA
ATTCAAGCTGTCAATGAGGTTTATAGGCTTCACAATCTTCCTGAATTTTATGAGGATCCA
CGCCCTCATATATCCTTGGTTTGGGCATTGGGGAACATTAGTGATTCACTGAAGAGAGCA
GTCGAAGAGATGAGGAGACACATTAATGTTGGGGGTTCAGTACAGAAACGTATTTTCACT
TGCAAATTCAATGGCATTGAGTGTAAGATAGGTAATAAGACCTATAAAATATGTAAATTT
TCTGAAGATTAA

Peptide Sequence

PEP ID

VIT_16s0039g02680.t01
PEP Infomation

pep chromosome:12X:16:3057352:3063054:1 gene:VIT_16s0039g02680 transcript:VIT_16s0039g02680.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:U6 snRNA phosphodiesterase [Source:UniProtKB/TrEMBL;Acc:A5BG02]
Sequence

MDALRASYANSCSDSESDSDTPRPTNENHQASGPLPPPPLALLSPPNSLGELNYSQTAQS
GRVRSFPHVEGNYALHVFIPVYIPSSPKKELVQYLKKVMSLVPGLHVVDVDIPLNILCKD
DNKLEQVALGREFHISLGRTVPIRVHQIDSIVTMLRQKLQFQRRYWIDFNKWEVFVNDDQ
TRSFLSVEVIAGGLAEITRQIQAVNEVYRLHNLPEFYEDPRPHISLVWALGNISDSLKRA
VEEMRRHINVGGSVQKRIFTCKFNGIECKIGNKTYKICKFSED

Transcript Sequence

Transcript ID

VIT_16s0039g02680.t01
Transcript Infomation

cdna chromosome:12X:16:3057352:3063054:1 gene:VIT_16s0039g02680 gene_biotype:protein_coding transcript_biotype:protein_coding description:U6 snRNA phosphodiesterase [Source:UniProtKB/TrEMBL;Acc:A5BG02]
Sequence

ATGTAATCGTCCCTTGAAGCAATCGGCAACTTCACTTCGTATAGTACCTCCGATACAAAC
CTGACCGGCAAATCATCATCCCCCCGGTTTCTCTCCATTACGGTTTCTCTTTATATCCCG
AGAAAATAAACGAAAAGAAACAAAAACGAATCAAGTTTGATAACCCCTACCAAAAAGCCT
CTGCGATTCTCCAGATTCATGGATGCTCTGAGAGCTTCGTACGCCAATAGTTGCTCCGAC
TCCGAATCCGATTCCGACACGCCGCGGCCAACAAACGAGAACCATCAAGCGTCGGGGCCT
CTGCCTCCGCCGCCTCTTGCACTCCTCAGCCCACCTAATTCTCTCGGGGAATTAAATTAC
TCACAAACTGCTCAGTCAGGTAGAGTAAGGAGCTTTCCTCATGTTGAAGGAAACTATGCT
TTACATGTGTTCATACCAGTTTATATACCATCTTCACCAAAGAAGGAGCTGGTCCAGTAT
TTGAAGAAGGTCATGTCTCTAGTGCCTGGTCTTCATGTTGTTGACGTGGATATACCACTT
AACATTCTATGCAAAGATGATAACAAGCTTGAACAAGTTGCATTAGGAAGGGAGTTTCAT
ATAAGTTTAGGAAGAACTGTTCCAATCCGAGTTCACCAGATTGACTCGATAGTGACAATG
CTCCGCCAGAAGCTTCAATTTCAGAGGCGGTATTGGATTGACTTTAATAAGTGGGAGGTT
TTTGTCAATGATGATCAGACACGCTCCTTTCTTTCAGTAGAAGTTATTGCTGGAGGCTTA
GCTGAGATAACACGGCAAATTCAAGCTGTCAATGAGGTTTATAGGCTTCACAATCTTCCT
GAATTTTATGAGGATCCACGCCCTCATATATCCTTGGTTTGGGCATTGGGGAACATTAGT
GATTCACTGAAGAGAGCAGTCGAAGAGATGAGGAGACACATTAATGTTGGGGGTTCAGTA
CAGAAACGTATTTTCACTTGCAAATTCAATGGCATTGAGTGTAAGATAGGTAATAAGACC
TATAAAATATGTAAATTTTCTGAAGATTAATCAAACCTCTGAAGTATGTAAATTTTCTAG
AAGAGCGGTGTGTTATCTTGTTTTTGTAATGAACTAATTTGGTCAGTATGATCAGTCAAA
TACATGTTGAGTTATT