Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_15s0048g00510.t01
CDS Infomation

cds chromosome:12X:15:14632320:14634885:1 gene:VIT_15s0048g00510 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectinesterase [Source:UniProtKB/TrEMBL;Acc:F6I390]
Sequence

ATGGTTGTAGAGTTTCTACTTGTGTCTCTCCTCCTTTCTCCGATTGTAGTCTCCGGCTAC
AAGTCGGAAGACGTGAAATCATGGTGTAGCCAAACACCCTACCCTCAACCTTGTGAGTAT
TTTCTGAGCCATAAACCTGACCATTCTCCTATCAAACAGAAGTCCGATTTTCTCAAAATA
TCGATGCAGCTGGCATTGGAACGTGCCCTTAGAGCCGAAAGTAACACCTATTCGCTAGGC
TCAAAGTGCCGAAACGAGCTCGAAAAGACTGCATGGAGTGACTGTCTTAAGCTCTATGAG
TACACCATTCTTAGGCTTAACAAAACTGTTGATCCCAACACAAAGTGCAGCCAAGTTGAC
TCTCAAACATGGCTCAGCACTGCCCTAACAAACCTCGAAACCTGTCGAGCCGGGTTCGTC
GAGCTCGGTGTCTCGGACTATCTCTTGCCCTTGATGTCCAACAACGTTTCCAAGCTCATC
AGCAACACTCTATCACTCAACAAGGTCCCATACACTGAGCCTAGCTACAAAGAGGGGTTC
CCAACTTGGGTCAAGCCTGGTGACCGGAAGCTTCTGCAGTCATCTTCTCCGGCTTCACAG
GCAAATATCGTGGTGGCAAAGGATGGTTCCGGTGATTACACAACAATAACAGCAGCAGTA
TCGGCCGCGTCGAAGCGATCGGGGACTGGAAGGTACGTGATATATGTGAAGGCAGGGACA
TACAATGAGAATATTGAGATTGGAGCTAAATTGAAGAATATCATGCTGTTGGGTGACGGT
ATCGGAAAGACCATCATCACCGGAAGCAAGAGCGTCGGAGGAGGCTCCACCACCTTCAAT
TCAGCCACCGTTGCTGCGGTTGGAGATGGATTCATCGGTCGAGGGCTGACGATCCGCAAC
ACTGCCGGAGCAGCAAACCACCAGGCAGTGGCTCTCCGGTCGGGGTCCGATCTCTCGGTG
TTCTACCAGTGCAGCTTTGAAGGGTACCAAGACACTCTCTACGTCCACTCCGAGAGACAA
TTCTACAGAGAATGTGACATCTACGGAACAGTAGATTTCATTTTTGGCAATGCTGCAGTC
GTGCTACAAAACTGTAACATTTATCCCCGCAACCCTCCCAACAAGACTAACACAATCACT
GCCCAAGGAAGGACCGATCCCAACCAAAATACCGGAATTTCCATCCACAATTGTAAGGTT
ACTGCTGCCTCAGACCTTAAATCGGTCCAAAGCTCGGTGAAGACATACCTTGGACGTCCA
TGGAAGGAGTACTCACGGACCGTCTTCATGAAGACGTACCTCGATAGCCTAATCAACCCT
GCAGGGTGGATGGAATGGAGTGGTAACTTTGCCCTAAAGACACTATACTATGGTGAATAC
ATGAACACCGGTCCTGGTTCATCGACATCGAATAGGGTAAATTGGGCTGGTTACCATGTT
ATAACGAGTTCATCGGAAGCGTCAAAGTTCACCGTCGGAAACTTCATCGCCGGCAACTCT
TGGTTGCCGGCAACCAACGTGCCTTTCACCTCCGGCCTTTGA

Peptide Sequence

PEP ID

VIT_15s0048g00510.t01
PEP Infomation

pep chromosome:12X:15:14632320:14634885:1 gene:VIT_15s0048g00510 transcript:VIT_15s0048g00510.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectinesterase [Source:UniProtKB/TrEMBL;Acc:F6I390]
Sequence

MVVEFLLVSLLLSPIVVSGYKSEDVKSWCSQTPYPQPCEYFLSHKPDHSPIKQKSDFLKI
SMQLALERALRAESNTYSLGSKCRNELEKTAWSDCLKLYEYTILRLNKTVDPNTKCSQVD
SQTWLSTALTNLETCRAGFVELGVSDYLLPLMSNNVSKLISNTLSLNKVPYTEPSYKEGF
PTWVKPGDRKLLQSSSPASQANIVVAKDGSGDYTTITAAVSAASKRSGTGRYVIYVKAGT
YNENIEIGAKLKNIMLLGDGIGKTIITGSKSVGGGSTTFNSATVAAVGDGFIGRGLTIRN
TAGAANHQAVALRSGSDLSVFYQCSFEGYQDTLYVHSERQFYRECDIYGTVDFIFGNAAV
VLQNCNIYPRNPPNKTNTITAQGRTDPNQNTGISIHNCKVTAASDLKSVQSSVKTYLGRP
WKEYSRTVFMKTYLDSLINPAGWMEWSGNFALKTLYYGEYMNTGPGSSTSNRVNWAGYHV
ITSSSEASKFTVGNFIAGNSWLPATNVPFTSGL

Transcript Sequence

Transcript ID

VIT_15s0048g00510.t01
Transcript Infomation

cdna chromosome:12X:15:14632320:14634885:1 gene:VIT_15s0048g00510 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectinesterase [Source:UniProtKB/TrEMBL;Acc:F6I390]
Sequence

TCGAAAACCCTAACCAGATAAACCCTAATCAAGCCATGGTTGTAGAGTTTCTACTTGTGT
CTCTCCTCCTTTCTCCGATTGTAGTCTCCGGCTACAAGTCGGAAGACGTGAAATCATGGT
GTAGCCAAACACCCTACCCTCAACCTTGTGAGTATTTTCTGAGCCATAAACCTGACCATT
CTCCTATCAAACAGAAGTCCGATTTTCTCAAAATATCGATGCAGCTGGCATTGGAACGTG
CCCTTAGAGCCGAAAGTAACACCTATTCGCTAGGCTCAAAGTGCCGAAACGAGCTCGAAA
AGACTGCATGGAGTGACTGTCTTAAGCTCTATGAGTACACCATTCTTAGGCTTAACAAAA
CTGTTGATCCCAACACAAAGTGCAGCCAAGTTGACTCTCAAACATGGCTCAGCACTGCCC
TAACAAACCTCGAAACCTGTCGAGCCGGGTTCGTCGAGCTCGGTGTCTCGGACTATCTCT
TGCCCTTGATGTCCAACAACGTTTCCAAGCTCATCAGCAACACTCTATCACTCAACAAGG
TCCCATACACTGAGCCTAGCTACAAAGAGGGGTTCCCAACTTGGGTCAAGCCTGGTGACC
GGAAGCTTCTGCAGTCATCTTCTCCGGCTTCACAGGCAAATATCGTGGTGGCAAAGGATG
GTTCCGGTGATTACACAACAATAACAGCAGCAGTATCGGCCGCGTCGAAGCGATCGGGGA
CTGGAAGGTACGTGATATATGTGAAGGCAGGGACATACAATGAGAATATTGAGATTGGAG
CTAAATTGAAGAATATCATGCTGTTGGGTGACGGTATCGGAAAGACCATCATCACCGGAA
GCAAGAGCGTCGGAGGAGGCTCCACCACCTTCAATTCAGCCACCGTTGCTGCGGTTGGAG
ATGGATTCATCGGTCGAGGGCTGACGATCCGCAACACTGCCGGAGCAGCAAACCACCAGG
CAGTGGCTCTCCGGTCGGGGTCCGATCTCTCGGTGTTCTACCAGTGCAGCTTTGAAGGGT
ACCAAGACACTCTCTACGTCCACTCCGAGAGACAATTCTACAGAGAATGTGACATCTACG
GAACAGTAGATTTCATTTTTGGCAATGCTGCAGTCGTGCTACAAAACTGTAACATTTATC
CCCGCAACCCTCCCAACAAGACTAACACAATCACTGCCCAAGGAAGGACCGATCCCAACC
AAAATACCGGAATTTCCATCCACAATTGTAAGGTTACTGCTGCCTCAGACCTTAAATCGG
TCCAAAGCTCGGTGAAGACATACCTTGGACGTCCATGGAAGGAGTACTCACGGACCGTCT
TCATGAAGACGTACCTCGATAGCCTAATCAACCCTGCAGGGTGGATGGAATGGAGTGGTA
ACTTTGCCCTAAAGACACTATACTATGGTGAATACATGAACACCGGTCCTGGTTCATCGA
CATCGAATAGGGTAAATTGGGCTGGTTACCATGTTATAACGAGTTCATCGGAAGCGTCAA
AGTTCACCGTCGGAAACTTCATCGCCGGCAACTCTTGGTTGCCGGCAACCAACGTGCCTT
TCACCTCCGGCCTTTGAATTGCTCCATTTCAA