Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_15s0048g00390.t01
CDS Infomation

cds chromosome:12X:15:14521029:14530827:-1 gene:VIT_15s0048g00390 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial [Source:UniProtKB/TrEMBL;Acc:D7U7W9]
Sequence

ATGGTGTCTCTGGCCACCTCAACATTTTCCCGCAATCTTTTTCCCAGGCCCTCACTTCCG
TACGTAGTGCGAGCTCTTGGAACAACGCTACTACAACTACATCCGAAGCCCACATCATGG
GGTCCTCTCAGTTCTTCATGGAAATCTTGTTCAGCCCATTTTTCTGCTTCAAGTTTCAAT
TTGTCAAAATCCCAGAATGAAACACTTGGCTCTCAAGATGATTTGGTTGTTTTGGGCATA
GAAACTAGCTGTGACGACACTGCTGCTGCTATTGTGAGAAGCAATGGTGATATTCTCAGC
CAAGTTGTGTCTTCTCAGGCAGATTTGCTTGCTCGATATGGAGGTGTTGCTCCCAAAATG
GCTGAAGGAGCACACATGCAAGTGATTGATCGGGTAGTTCAAGATGCACTTGAGAATGCT
AATTTAACTGAGAGGGACCTGTCTGCAGTTGCTGTTACTATTGGTCCTGGTTTAAGCCTC
TGCCTTCGTGTTGGTGTGCAGAAGGCTCGGAAAATTGCTGGTAGCCACAATCTCCCAATT
GTTGGTGTCCATCACATGGAGGCTCATGCTTTAGTAGCCAGGTTAATTGAAAAAGACTTG
CAATTTCCTTTCATGGCCCTGCTCATTTCAGGAGGGCACAATCTTCTTATTCTTGCACGT
GATCTCGGTCATTACATACAACTTGGGACCACAATAGATGATGCGATTGGTGAGGCATAT
GACAAGACAGCAAAATGGCTTGGTCTTGACTTGAGGAGGAGTGGTGGTCCAGCTATAGAA
GAGCTTGCCAGAGAGGGTGATGCAAAAGCAGTCAAATTTTCAACCCCAATGAAACAACAT
AAGGATTGTAACTTCTCGTACGCTGGTTTGAAGACTCAAGTGAGGCTGGCAATCGAATCC
AGAAATATCAATGCTGAAATTCCCATTTCTTCTGCAAGTAGTGAAGACAGAAGTTCCCGA
GCTGATATTGCTGCCTCTTTCCAGCGAGTTGCGGTATTACATCTAGAAGAAAGGTGTGAA
CGAGCAATTGAATGGGCATTAAAGATTGAGCCTTCCATAAAACATTTGGTGGTTTCTGGA
GGTGTAGCATCAAATCAGTATGTCAGGGCTCAGCTTGATCAGGTTGTCAAGAAAAAAAGC
CTGCAACTTGTGTGCCCTCCCCCCAGCCTCTGTACTGACAATGGTGTTATGGTGGCTTGG
ACTGGCTTGGAGCACTTTCGCATGGGAAGATATGATCCTCCACCACCTGCTAATGAACCT
GAAGATTATGTGTACGATTTGCGGCCAAGGTGGCCACTGGGGGAGGAATATTCTGAAGGA
AGAAGTGAAGCTCGGTCCTTGAGAACGGCCAGGATTCACCCATCTCTTACATCTCTTATC
CAAGCATCAATGCAACAGCAGTCGTAG

Peptide Sequence

PEP ID

VIT_15s0048g00390.t01
PEP Infomation

pep chromosome:12X:15:14521029:14530827:-1 gene:VIT_15s0048g00390 transcript:VIT_15s0048g00390.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial [Source:UniProtKB/TrEMBL;Acc:D7U7W9]
Sequence

MVSLATSTFSRNLFPRPSLPYVVRALGTTLLQLHPKPTSWGPLSSSWKSCSAHFSASSFN
LSKSQNETLGSQDDLVVLGIETSCDDTAAAIVRSNGDILSQVVSSQADLLARYGGVAPKM
AEGAHMQVIDRVVQDALENANLTERDLSAVAVTIGPGLSLCLRVGVQKARKIAGSHNLPI
VGVHHMEAHALVARLIEKDLQFPFMALLISGGHNLLILARDLGHYIQLGTTIDDAIGEAY
DKTAKWLGLDLRRSGGPAIEELAREGDAKAVKFSTPMKQHKDCNFSYAGLKTQVRLAIES
RNINAEIPISSASSEDRSSRADIAASFQRVAVLHLEERCERAIEWALKIEPSIKHLVVSG
GVASNQYVRAQLDQVVKKKSLQLVCPPPSLCTDNGVMVAWTGLEHFRMGRYDPPPPANEP
EDYVYDLRPRWPLGEEYSEGRSEARSLRTARIHPSLTSLIQASMQQQS

Transcript Sequence

Transcript ID

VIT_15s0048g00390.t01
Transcript Infomation

cdna chromosome:12X:15:14521029:14530827:-1 gene:VIT_15s0048g00390 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial [Source:UniProtKB/TrEMBL;Acc:D7U7W9]
Sequence

TTTCACCCGTTTTCTCTACAGCCAAACAAGAATCCGTGAGAGGCGAGGAATGGTGTCTCT
GGCCACCTCAACATTTTCCCGCAATCTTTTTCCCAGGCCCTCACTTCCGTACGTAGTGCG
AGCTCTTGGAACAACGCTACTACAACTACATCCGAAGCCCACATCATGGGGTCCTCTCAG
TTCTTCATGGAAATCTTGTTCAGCCCATTTTTCTGCTTCAAGTTTCAATTTGTCAAAATC
CCAGAATGAAACACTTGGCTCTCAAGATGATTTGGTTGTTTTGGGCATAGAAACTAGCTG
TGACGACACTGCTGCTGCTATTGTGAGAAGCAATGGTGATATTCTCAGCCAAGTTGTGTC
TTCTCAGGCAGATTTGCTTGCTCGATATGGAGGTGTTGCTCCCAAAATGGCTGAAGGAGC
ACACATGCAAGTGATTGATCGGGTAGTTCAAGATGCACTTGAGAATGCTAATTTAACTGA
GAGGGACCTGTCTGCAGTTGCTGTTACTATTGGTCCTGGTTTAAGCCTCTGCCTTCGTGT
TGGTGTGCAGAAGGCTCGGAAAATTGCTGGTAGCCACAATCTCCCAATTGTTGGTGTCCA
TCACATGGAGGCTCATGCTTTAGTAGCCAGGTTAATTGAAAAAGACTTGCAATTTCCTTT
CATGGCCCTGCTCATTTCAGGAGGGCACAATCTTCTTATTCTTGCACGTGATCTCGGTCA
TTACATACAACTTGGGACCACAATAGATGATGCGATTGGTGAGGCATATGACAAGACAGC
AAAATGGCTTGGTCTTGACTTGAGGAGGAGTGGTGGTCCAGCTATAGAAGAGCTTGCCAG
AGAGGGTGATGCAAAAGCAGTCAAATTTTCAACCCCAATGAAACAACATAAGGATTGTAA
CTTCTCGTACGCTGGTTTGAAGACTCAAGTGAGGCTGGCAATCGAATCCAGAAATATCAA
TGCTGAAATTCCCATTTCTTCTGCAAGTAGTGAAGACAGAAGTTCCCGAGCTGATATTGC
TGCCTCTTTCCAGCGAGTTGCGGTATTACATCTAGAAGAAAGGTGTGAACGAGCAATTGA
ATGGGCATTAAAGATTGAGCCTTCCATAAAACATTTGGTGGTTTCTGGAGGTGTAGCATC
AAATCAGTATGTCAGGGCTCAGCTTGATCAGGTTGTCAAGAAAAAAAGCCTGCAACTTGT
GTGCCCTCCCCCCAGCCTCTGTACTGACAATGGTGTTATGGTGGCTTGGACTGGCTTGGA
GCACTTTCGCATGGGAAGATATGATCCTCCACCACCTGCTAATGAACCTGAAGATTATGT
GTACGATTTGCGGCCAAGGTGGCCACTGGGGGAGGAATATTCTGAAGGAAGAAGTGAAGC
TCGGTCCTTGAGAACGGCCAGGATTCACCCATCTCTTACATCTCTTATCCAAGCATCAAT
GCAACAGCAGTCGTAGCCTGTTCCTCCATGCAGCTGCTCCTTCACTGTAGCGGCTTGTCG
GAATCGAGTGACCTCTGAGAAATGGCAATACTTTCTGGAGCTCTAGTTGCTGTGAAGAAC
CCTTACAAAGAGTGTCGTGTTCAAAATTTTTAGCCATTTGTTTCCTGGAAAAGAACCTTT
ACTGCTCTACACACCTCATATCTCCTGTATGCGTGTGTAGTTTTAAGGTCATTTAGATGA
ATGACTTCCAATGTACTGCCCTATTGTTTGTGTTTGCATAAAGGAGACGAGCCTCGTGGG
TGAGAGGAGTTGTGTGACCCAGAAGCATGGCTGACCAGGAACCTACCTGACGATCTGTAA
GGCTCACAAACAGGGTCCAAGCTCTGCTCTACCATTGAACTTAAAAGTCATATTTTTTTG
TCCCAATTTCTGTAACAAGTAGGATTTGACAGGCAAATAATGATGGATACTTGAGTTTCA
TAGAAATATTCATGTTTCAATATTATGC