Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_15s0046g01120.t01
CDS Infomation

cds chromosome:12X:15:18163099:18170054:-1 gene:VIT_15s0046g01120 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ribosome biogenesis regulatory protein [Source:UniProtKB/TrEMBL;Acc:F6I6B2]
Sequence

ATGACTGGGATGGATACACAAGAGCATCAGATTGACTTAGGTCACCTTATGGCCTTCGAC
CCACTTCACCACTTCCCTTCTCCCCCCACTTCCAGGGAAGAGCTTGTGAAGGAGTGTTTA
CAAAAGGGCACTGTGCTAGTCCAGTTAATTGCAGATGCCCTTTTCAACTTACCTTCGACT
GAAGACATAGACGGACCCTTAGTCAAGTTGCCTCCACCGATGACAAGATTGCCTAGAGAA
AAGCATCTGCCTAAGCCTAAACCACCTACAAAATGGGAGTTGTTTGCCAAAGCTAAAGGT
ATAAAGAACCGCAAAAAAGATAAGATTGTTTATGATGAGCAAACTGGTACTTGGAAGCGT
CGCCATGGATATGATCGTGTAAATGATGACAAAGATATACCCATTATCGAGGCCAAGATG
ACCGATGAGCCAGGAGAGGATCCTTTTGTTAAGAGACAAGCAGAAAAGAAGAAACGTGTT
GAAAAACATGAGAAGAATCGATTACAGAATCTGAAACAAGCTGCAAAAGTTGGTGCTTTG
CCAAGCCACATTCAACTTGCTGCCACAGCCTTACCTATTACTGGAACCCAAGCTGCCCCA
AAGAAAGCCAGCAAAAATGAACTTCAGGACATAGCAAGCATGGCTGCTGCCGCAACAGCC
AGTGGTGGGAAATTTGACAAGAAGTTGGTTGGAGAAAAACCTGAAAAACATAAAGGAAAG
TATCGCAAGTTCCTGCCAGTAGTGGAAGGAACAGGAATTGGATCACAAGAGAAGCAGCAA
ACTGAAAAAGTTTTGAATAGGCTAATCTCCAAGAATTCCCATGAGATACTCAATGTTGAC
AAGGCTATTAACATGTACAATGTGAAGAAAGAGAAGAAAAGAAAGAATCAGAGGGGGAAG
GATTCATCAACTTCAAGCAAGTTGAAACCGAAGAAGCAGCTCCAGAAGAAGTCGTTAAAG
AAAGGAGGATCTTCGAAGAAAGGGAAGTCAAAATGA

Peptide Sequence

PEP ID

VIT_15s0046g01120.t01
PEP Infomation

pep chromosome:12X:15:18163099:18170054:-1 gene:VIT_15s0046g01120 transcript:VIT_15s0046g01120.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ribosome biogenesis regulatory protein [Source:UniProtKB/TrEMBL;Acc:F6I6B2]
Sequence

MTGMDTQEHQIDLGHLMAFDPLHHFPSPPTSREELVKECLQKGTVLVQLIADALFNLPST
EDIDGPLVKLPPPMTRLPREKHLPKPKPPTKWELFAKAKGIKNRKKDKIVYDEQTGTWKR
RHGYDRVNDDKDIPIIEAKMTDEPGEDPFVKRQAEKKKRVEKHEKNRLQNLKQAAKVGAL
PSHIQLAATALPITGTQAAPKKASKNELQDIASMAAAATASGGKFDKKLVGEKPEKHKGK
YRKFLPVVEGTGIGSQEKQQTEKVLNRLISKNSHEILNVDKAINMYNVKKEKKRKNQRGK
DSSTSSKLKPKKQLQKKSLKKGGSSKKGKSK

Transcript Sequence

Transcript ID

VIT_15s0046g01120.t01
Transcript Infomation

cdna chromosome:12X:15:18163099:18170054:-1 gene:VIT_15s0046g01120 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ribosome biogenesis regulatory protein [Source:UniProtKB/TrEMBL;Acc:F6I6B2]
Sequence

TTCTTCTTCTTCTTCTTGGGGGTTGAACAAAGCCTAATCCAAAGGCAGAGAGGAGGTGCT
GGAATGACTGGGATGGATACACAAGAGCATCAGATTGACTTAGGTCACCTTATGGCCTTC
GACCCACTTCACCACTTCCCTTCTCCCCCCACTTCCAGGGAAGAGCTTGTGAAGGAGTGT
TTACAAAAGGGCACTGTGCTAGTCCAGTTAATTGCAGATGCCCTTTTCAACTTACCTTCG
ACTGAAGACATAGACGGACCCTTAGTCAAGTTGCCTCCACCGATGACAAGATTGCCTAGA
GAAAAGCATCTGCCTAAGCCTAAACCACCTACAAAATGGGAGTTGTTTGCCAAAGCTAAA
GGTATAAAGAACCGCAAAAAAGATAAGATTGTTTATGATGAGCAAACTGGTACTTGGAAG
CGTCGCCATGGATATGATCGTGTAAATGATGACAAAGATATACCCATTATCGAGGCCAAG
ATGACCGATGAGCCAGGAGAGGATCCTTTTGTTAAGAGACAAGCAGAAAAGAAGAAACGT
GTTGAAAAACATGAGAAGAATCGATTACAGAATCTGAAACAAGCTGCAAAAGTTGGTGCT
TTGCCAAGCCACATTCAACTTGCTGCCACAGCCTTACCTATTACTGGAACCCAAGCTGCC
CCAAAGAAAGCCAGCAAAAATGAACTTCAGGACATAGCAAGCATGGCTGCTGCCGCAACA
GCCAGTGGTGGGAAATTTGACAAGAAGTTGGTTGGAGAAAAACCTGAAAAACATAAAGGA
AAGTATCGCAAGTTCCTGCCAGTAGTGGAAGGAACAGGAATTGGATCACAAGAGAAGCAG
CAAACTGAAAAAGTTTTGAATAGGCTAATCTCCAAGAATTCCCATGAGATACTCAATGTT
GACAAGGCTATTAACATGTACAATGTGAAGAAAGAGAAGAAAAGAAAGAATCAGAGGGGG
AAGGATTCATCAACTTCAAGCAAGTTGAAACCGAAGAAGCAGCTCCAGAAGAAGTCGTTA
AAGAAAGGAGGATCTTCGAAGAAAGGGAAGTCAAAATGAAAGCCGTGTTTTATGTGACTA
ATTCTACAACATTTTGTTGGTTAAAAATTTTGCTCATCTGAAAGGAGGGAATGTCTTTCA
TTTTTGT