Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_15s0024g00640.t01
CDS Infomation

cds chromosome:12X:15:1093859:1099408:-1 gene:VIT_15s0024g00640 gene_biotype:protein_coding transcript_biotype:protein_coding description:RNA polymerase sigma factor [Source:UniProtKB/TrEMBL;Acc:D7UB90]
Sequence

ATGTCTTGTCTACTGCCCCAGTTCAAGTGCCCACCCGACACCTTCTCCACCCATCCCAAA
CTCCACATCCTCTCTAAAAATAGGGAGGCTATTTATTTTCGGGTACAATGTGCTTTATCT
ACTACGTCACCGCCACTATCAACATCCACAACCGCTGTGCTTGATATTGAGAAGCTACGA
TTACCTTCGTTAGAATCTCATTCAAATTCAGTTGCTGCCCACAGACCATGGACGTATATA
GGGGTAGTGGGTCCACCCACAGAGGCTAATTTTGAAGCAACATTGGCTAGGGAAACACTT
CTCACAAGTGAAGAAGCAGTAATAGCTGCTGCCGCCGCTGAAGCGGTTGCTCTGGCAAAA
GCAGCTGTCAAGGTTGCAAAGGATGCTGCTCGGTTGGTTGGCAAGAACAACTCCGCCAAG
TCAGAAACTAAACCTGCATCTTTCTTATCAGGAGATGATACATCCCAGTTCAGAAGAATT
CAGTTTACAGAAACAGAACGAATTGGCATACTAGGAGATTCTGTAGGAGCTGAAACTGGC
ATGGTAGACTATAATTCCTTGCAGGATGTGACAGAAGATTCTGATGATTTGGAGCCGACA
CTTGAAGAGCTTGAACTTCTTGAGGCAGAATTCTCCAAGAGTATAGTTGTGAGATCGAAT
CGTCAAGTAGAAAGGAAAGCAAGAAGAGCAAGAGCAGCAGAGAAGGCTTCTGCTGGTGTT
GTGTCTGTGAGGTCTGGTTCTACCAGCCGCAGAAAGCGTGTTTCTTTGCAAGAAGTAGAC
TACTCTGACCCATTGCGTTACTTGAGAGGAACTACAAGCACTTCCAGGCTTCTCACTGCT
ACTGAAGAACTGGAGTTGTCAGAAGGAATTCAGGACTTACTGAAACTAGAAAAGCTTCAA
GAGGACCTTGAAGAACGATTTGGGGTTAAGCCCACCTTTGCACAATGGGCAGCTGCAGCA
GGAGTGGACCAGAAAACCCTGAGGCGGCGCACAAATTATGGGATCCGTTGCAAAGACAAA
ATGATTAAAAGCAACATACGGCTTGTTATTTCAATTGCAAAAAATTATCAGGGAGCTGGG
ATGAATATACAAGATCTTGTTCAGGAAGGATGCCGAGGCCTTGTAAGAGGTGCAGAAAAG
TTTGATGCTTCAAAGGGATTCAAGTTCTCAACATATGCTCACTGGTGGATTAAACAGGCA
GTTCGGAAATCTCTTTCTGATCAGTCCAGGACAATCCGATTGCCATTTCACATGGTTGAG
GCGACTTACAGAGTAAAGGAGGCGAGAAAACAATTATACAGTGAAAATGGAAGGCATCCT
AATAATGAAGAAGTTGCAGAGGCAACTGGGCTCTCAATGAAGCGGCTCAATGCTGTGCTA
CTAACCCCTAAAGCTCCAAGATCTCTTGACCAGAAGATAGGAATCAACCAGAATCTTAAA
CCTTCGGAAGTGATTGCAGATCCCGATGCGGAGACAGCTGAGGAGCTGCTAATCAAGCAA
TTCATGAGGGAGGACCTGGAGAAGGTGTTGAACAGTCTGAACCCAAGGGAGAAGCAGGTC
ATCAGGTGGAGGTACGGGCTGGAAGATGGAAGGACGAAGACACTGCAGGAGATTGGGGAG
CTGATGGGTGTGAGCAGGGAGAGAATCAGGCAAATTGAGTCATGTGCATTCAGAAAGCTC
AAGAACAAGAGGAGAACCAAACATCTGCAGCAGTACTTGGTTTCATAA

Peptide Sequence

PEP ID

VIT_15s0024g00640.t01
PEP Infomation

pep chromosome:12X:15:1093859:1099408:-1 gene:VIT_15s0024g00640 transcript:VIT_15s0024g00640.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:RNA polymerase sigma factor [Source:UniProtKB/TrEMBL;Acc:D7UB90]
Sequence

MSCLLPQFKCPPDTFSTHPKLHILSKNREAIYFRVQCALSTTSPPLSTSTTAVLDIEKLR
LPSLESHSNSVAAHRPWTYIGVVGPPTEANFEATLARETLLTSEEAVIAAAAAEAVALAK
AAVKVAKDAARLVGKNNSAKSETKPASFLSGDDTSQFRRIQFTETERIGILGDSVGAETG
MVDYNSLQDVTEDSDDLEPTLEELELLEAEFSKSIVVRSNRQVERKARRARAAEKASAGV
VSVRSGSTSRRKRVSLQEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDLLKLEKLQ
EDLEERFGVKPTFAQWAAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISIAKNYQGAG
MNIQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVE
ATYRVKEARKQLYSENGRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQKIGINQNLK
PSEVIADPDAETAEELLIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTKTLQEIGE
LMGVSRERIRQIESCAFRKLKNKRRTKHLQQYLVS

Transcript Sequence

Transcript ID

VIT_15s0024g00640.t01
Transcript Infomation

cdna chromosome:12X:15:1093859:1099408:-1 gene:VIT_15s0024g00640 gene_biotype:protein_coding transcript_biotype:protein_coding description:RNA polymerase sigma factor [Source:UniProtKB/TrEMBL;Acc:D7UB90]
Sequence

CTCTCCTCCTCCTCCTCCTCCTTCTCCTCTTCTCCTTCTTCCCATTTCTAAAGTAAACTC
TGACACCCTTCTCTCAGTCTCAATCCCAATCTGTTTTCTTCTCTTTCTGTACATACACAT
CCATTGATGATCTATGTCTTGTCTACTGCCCCAGTTCAAGTGCCCACCCGACACCTTCTC
CACCCATCCCAAACTCCACATCCTCTCTAAAAATAGGGAGGCTATTTATTTTCGGGTACA
ATGTGCTTTATCTACTACGTCACCGCCACTATCAACATCCACAACCGCTGTGCTTGATAT
TGAGAAGCTACGATTACCTTCGTTAGAATCTCATTCAAATTCAGTTGCTGCCCACAGACC
ATGGACGTATATAGGGGTAGTGGGTCCACCCACAGAGGCTAATTTTGAAGCAACATTGGC
TAGGGAAACACTTCTCACAAGTGAAGAAGCAGTAATAGCTGCTGCCGCCGCTGAAGCGGT
TGCTCTGGCAAAAGCAGCTGTCAAGGTTGCAAAGGATGCTGCTCGGTTGGTTGGCAAGAA
CAACTCCGCCAAGTCAGAAACTAAACCTGCATCTTTCTTATCAGGAGATGATACATCCCA
GTTCAGAAGAATTCAGTTTACAGAAACAGAACGAATTGGCATACTAGGAGATTCTGTAGG
AGCTGAAACTGGCATGGTAGACTATAATTCCTTGCAGGATGTGACAGAAGATTCTGATGA
TTTGGAGCCGACACTTGAAGAGCTTGAACTTCTTGAGGCAGAATTCTCCAAGAGTATAGT
TGTGAGATCGAATCGTCAAGTAGAAAGGAAAGCAAGAAGAGCAAGAGCAGCAGAGAAGGC
TTCTGCTGGTGTTGTGTCTGTGAGGTCTGGTTCTACCAGCCGCAGAAAGCGTGTTTCTTT
GCAAGAAGTAGACTACTCTGACCCATTGCGTTACTTGAGAGGAACTACAAGCACTTCCAG
GCTTCTCACTGCTACTGAAGAACTGGAGTTGTCAGAAGGAATTCAGGACTTACTGAAACT
AGAAAAGCTTCAAGAGGACCTTGAAGAACGATTTGGGGTTAAGCCCACCTTTGCACAATG
GGCAGCTGCAGCAGGAGTGGACCAGAAAACCCTGAGGCGGCGCACAAATTATGGGATCCG
TTGCAAAGACAAAATGATTAAAAGCAACATACGGCTTGTTATTTCAATTGCAAAAAATTA
TCAGGGAGCTGGGATGAATATACAAGATCTTGTTCAGGAAGGATGCCGAGGCCTTGTAAG
AGGTGCAGAAAAGTTTGATGCTTCAAAGGGATTCAAGTTCTCAACATATGCTCACTGGTG
GATTAAACAGGCAGTTCGGAAATCTCTTTCTGATCAGTCCAGGACAATCCGATTGCCATT
TCACATGGTTGAGGCGACTTACAGAGTAAAGGAGGCGAGAAAACAATTATACAGTGAAAA
TGGAAGGCATCCTAATAATGAAGAAGTTGCAGAGGCAACTGGGCTCTCAATGAAGCGGCT
CAATGCTGTGCTACTAACCCCTAAAGCTCCAAGATCTCTTGACCAGAAGATAGGAATCAA
CCAGAATCTTAAACCTTCGGAAGTGATTGCAGATCCCGATGCGGAGACAGCTGAGGAGCT
GCTAATCAAGCAATTCATGAGGGAGGACCTGGAGAAGGTGTTGAACAGTCTGAACCCAAG
GGAGAAGCAGGTCATCAGGTGGAGGTACGGGCTGGAAGATGGAAGGACGAAGACACTGCA
GGAGATTGGGGAGCTGATGGGTGTGAGCAGGGAGAGAATCAGGCAAATTGAGTCATGTGC
ATTCAGAAAGCTCAAGAACAAGAGGAGAACCAAACATCTGCAGCAGTACTTGGTTTCATA
AGCCTCTCCAGCCCCAGAAATCCAGAGCTCCATAACTCATTTCTGCAACTTAGTTCAAAG
TTGGATAGAGCTCTGTGTTTACCTCCTTTTACAATTATTCCTTCATTTTCCTTTTTCCTG
CATGGAAATGTATCTT