Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_13s0139g00150.t01
CDS Infomation

cds chromosome:12X:13:20387237:20393292:1 gene:VIT_13s0139g00150 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A5CAJ5]
Sequence

ATGGCATCTGGGAATACATATTTTGATGACATGCGGAGCAAATCTGAGGTTATTGATCCT
CCTCAAAGTGAAGATATGATGGAAGTCAGTGAACATGTGAATGATCCAGCTCAAACTACT
CTGAAACCTAACGTGACCGTCTCTAGTAGTGTGCGGGAGCTATTAGAGTGTCCTGTGTGC
TTAAATGCTATGTACCCTCCCATCCATCAGTGTTCAAATGGTCACACATTGTGTTCTGGA
TGCAAACCTAGGGTGCATAACCGATGTCCCACTTGCAGGCATGAACTTGGCAATATCAGA
TGTCTTGCCTTGGAGAAGGTAGCTGCGTCCCTTGAACTTCCATGTAAATATCAGAGTTTT
GGGTGCTTGGGCATATATCCTTATTACAGCAAGCTAAAGCATGAATCTCAGTGTGTCTAT
AGACCCTATAACTGCCCCTATGCTGGATCAGAATGCACAGTCATTGGTGACATTCCTTAT
CTGGTGGCCCACCTAAAAGATGATCATAAAGTTGACATGCACAATGGCAGTACTTTCAAC
CATCGCTATGTTAAATCAAATCCTCATGAGGTTGAAAATGCTACTTGGATGCTAACGGTT
TTCAGTTGCTTTGGTCAGTACTTCTGTCTGCATTTTGAAGCCTTCCAGCTTGGAATGGCG
CCAGTCTATATAGCATTCTTGAGGTTCATGGGTGATGACAATGAGGCAAAGAACTACAGT
TACAGTCTAGAGGTGGGAGGGACTGGCAGGAAGATGATTTGGCAAGGGGTGCCCAGAAGC
ATAAGGGACAGCCACAGAAAGGTTCGTGACAGTTTTGATGGACTCATCATCCAGCGCAAC
ATGGCTCTCTTCTTCTCAGGAGGTGATCGGAAGGAATTGAAGTTAAGAGTGACTGGTAGG
ATTTGGAAGGAACAGTGA

Peptide Sequence

PEP ID

VIT_13s0139g00150.t01
PEP Infomation

pep chromosome:12X:13:20387237:20393292:1 gene:VIT_13s0139g00150 transcript:VIT_13s0139g00150.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A5CAJ5]
Sequence

MASGNTYFDDMRSKSEVIDPPQSEDMMEVSEHVNDPAQTTLKPNVTVSSSVRELLECPVC
LNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSF
GCLGIYPYYSKLKHESQCVYRPYNCPYAGSECTVIGDIPYLVAHLKDDHKVDMHNGSTFN
HRYVKSNPHEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYS
YSLEVGGTGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGR
IWKEQ

Transcript Sequence

Transcript ID

VIT_13s0139g00150.t01
Transcript Infomation

cdna chromosome:12X:13:20387237:20393292:1 gene:VIT_13s0139g00150 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:A5CAJ5]
Sequence

GTTAAGTAATTGGTTGGCATCTTCTAAAAGAAAGAAGACTAGAAGCAAGGGTGGAAAGTG
TGATTTGGAGAGTAAGCAGCAGGCCATACTTGTAATGGCATCTGGGAATACATATTTTGA
TGACATGCGGAGCAAATCTGAGGTTATTGATCCTCCTCAAAGTGAAGATATGATGGAAGT
CAGTGAACATGTGAATGATCCAGCTCAAACTACTCTGAAACCTAACGTGACCGTCTCTAG
TAGTGTGCGGGAGCTATTAGAGTGTCCTGTGTGCTTAAATGCTATGTACCCTCCCATCCA
TCAGTGTTCAAATGGTCACACATTGTGTTCTGGATGCAAACCTAGGGTGCATAACCGATG
TCCCACTTGCAGGCATGAACTTGGCAATATCAGATGTCTTGCCTTGGAGAAGGTAGCTGC
GTCCCTTGAACTTCCATGTAAATATCAGAGTTTTGGGTGCTTGGGCATATATCCTTATTA
CAGCAAGCTAAAGCATGAATCTCAGTGTGTCTATAGACCCTATAACTGCCCCTATGCTGG
ATCAGAATGCACAGTCATTGGTGACATTCCTTATCTGGTGGCCCACCTAAAAGATGATCA
TAAAGTTGACATGCACAATGGCAGTACTTTCAACCATCGCTATGTTAAATCAAATCCTCA
TGAGGTTGAAAATGCTACTTGGATGCTAACGGTTTTCAGTTGCTTTGGTCAGTACTTCTG
TCTGCATTTTGAAGCCTTCCAGCTTGGAATGGCGCCAGTCTATATAGCATTCTTGAGGTT
CATGGGTGATGACAATGAGGCAAAGAACTACAGTTACAGTCTAGAGGTGGGAGGGACTGG
CAGGAAGATGATTTGGCAAGGGGTGCCCAGAAGCATAAGGGACAGCCACAGAAAGGTTCG
TGACAGTTTTGATGGACTCATCATCCAGCGCAACATGGCTCTCTTCTTCTCAGGAGGTGA
TCGGAAGGAATTGAAGTTAAGAGTGACTGGTAGGATTTGGAAGGAACAGTGAAGTGATTT
GTTCTCCTCCCTGCTTCTCTTTTTGCCTTCTATTTTGCCCTAGTAAGTAGATCAGTTTGT
TGTTGTTGTTGTAGTGCCATATTAGGTCTTCTGGTCATGTATTTTTTGGATTCTTGGAGG
CAAACCCTCTTTGCT