Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_12s0057g00980.t01
CDS Infomation

cds chromosome:12X:12:9664313:9670137:-1 gene:VIT_12s0057g00980 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phytochrome [Source:UniProtKB/TrEMBL;Acc:F6HHP7]
Sequence

ATGTCCTCAAAGTCTACTAACAAGACGAATTGTTCTAGGAGCAGCTCTGCTCGATCAAAA
CATGGCGCCCGTGTGGTGGCACAGACCCCAATTGATGCCCAGCTTCATGTGAACTTTGAG
GAGTCTGAACGTCATTTTGATTACTCTGCTTCAGTTGACTTCAATATCTCAAGTTCCACT
AGTGATGTCCCCTCTTCTACGGTCTCAGCTTACCTCCAAAAGATGCAGAGGGGAAACCTG
ATCCAACCATTTGGCTGCATGATTGCAGTTGATGAGCAGAATCTCACAGTTCTTGCCTAC
AGCGAAAATGCCCCTGAAATGTTGGACTTAGCCCCACATGCTGTTCCAAGCATTGAGCAG
CAAGAGGCCTTGGCAATTGGAACAGATGTTCGGACACTCTTTCGATCCTCGGGGGCAGCT
GCCTTGCAGAAAGCAGCCAATTTTGGGGAAGTCAATCTCCTCAATCCCATATTGGTCCAT
TGTAGAAACTCCGGTAAGCCCTTCTATGCAATTCTGCACCGAATTGATGTAGGGTTAATT
ATAGATTTGGAGCCAGTGAATCCAGCTGATGTCCCAGTTACAGCGGCTGGGGCATTAAAG
TCATATAAGCTTGCTGCCAAAGCCATTTCAAGATTGCAATCTTTGCCAAGTGGGAATATA
TCACTGTTATGTGACGTGTTAGTCAAGGAAGCGAGTGAATTAACGGGTTATGATCGAGTG
ATGGTGTATAAATTTCATGAGGATGAGCATGGGGAAGTTATTGCAGAGTGCCGCAAACCC
GACTTGGAACCCTATCTTGGTTTGCATTACCCAGCTACTGATATACCACAAGCTTCAAGA
TTCCTCTTCATGAAAAATAAGGTTAGGATGATATGTGATTGTTTGGCCCCGCCTGTTAAA
GTTATTCAAAACAAAAGATTAGCTCAGCCATTGAGCCTCTGTGGATCCACATTGAGATCT
CCTCATGGGTGTCATGCACAGTACATGGCGAATATGGGTTCGGTTGCATCGCTTGTGATG
TCTGTGACCATCAATGAGGAAGATGATGATACAGAGAGTGAGCAACAAAAGGGAAGAAAA
TTGTGGGGCTTGGTGGTTTGCCATAATACAAGCCCTAGGTTTGTTCCGTTCCCTTTGAGG
TATGCCTGTGAGTTTTTGGTTCAAGTTTTTGGTGTACAAATTAGCAAGGAAATGGAGCTA
GCTGCCCAAATGAAGGAGAAGCATATTTTGCAGACACAAACCGTGCTTTGCGACATGCTC
CTTAGAGATGCACCTGTAGGAATTGTTACTCAATCACCCAATGTGATGGACCTGGTTAGG
TGTGATGGAGCTGCGCTCTACTACCAGAAGAAATTTTGGTTGCTTGGGGTCACCCCTACA
GAGGCACAGATTAGAGATATAGTTGAGTGGCTTCTTGAGTACCACAGTGGGAGTACAGGC
TTAAGTACTGATAGCCTGATGGAAGCTGGCTACCCAGCTGCCTCAGTTCTTGGTGATGCA
GTTTGTGGGATTGCTGCCGTTAAGATTAATTCAAACGATTTCCTTTTTTGGTTCCGGTCC
CACACGGCAAAGGAGATTAAGTGGGGTGGTGCAAAACATGATCCTGATGATAAGGATGAT
GGGAGAAAGATGCACCCTAGATCCTCATTCAAGGCTTTTCTGGAGGTGGTAAAGCGGCGG
AGCCTACCTTGGGAAGATGTGGAAATGGATGCCATCCATTCCTTGCAGCTGATATTGAGA
GGCTCCTTGCAGGATAAGAGCGCAGATGACTCTAAAATGATTGTGAATGTTCCATCAGTT
GATGCCAGCATAAAAATGGCTGATGACTTGCGCATAGTCACAAATGAAATGGTTCGTCTT
ATTGAAACAGCTTCTGTTCCCATCCTGGCTGTTGATGCCGCTGGTTGCATAAATGGGTGG
AATAACAAAGCGGCCGAGCTAACAGGATTGATCATGCAGCAAGCCATTGGCATGCCCTTA
ATTAATCTTGTTGAGAATGATTCAGCCGACATGGTGAAGAAGATGCTCTCCATGGCATTG
CAAGGTATAGAAGAGCAAAATGTTGAGATCAAACTCAAGACATTTGGTCCCCAGGAAAAC
AATGGCCCTGTTATATTGGTAGTTAATGCATGTTGTAGCCGAGACATAAAGGATAATGTC
GTAGGGGTTTGCTTCGTTGGGCAAGATATCACAGGGCAAAAGATGGTTATGGACAAATAT
ACTCGTATCCAAGGTGATTATGTTGGAATTGTGCGGAACCCATCTGCACTAATTCCTCCC
ATTTTTATGATGGACGAGCATGGTCGATGCTTGGAATGGAATGATGCAATGCAAAACTTG
TCTGGTCTGAAGAGAGAAGAAGCCACTGATAGGATGCTTCTCGGGGAGGTTTTTACGGTC
AATAATTTTGGTTGTCAGGTTAAAGATCATGACACATTAACCAAGCTCAGGATATTACTA
AATGGAGCCATTGCAGGTCAGGATGCACAGAAATTGTTATTTGGGTTCTTTGATCAGCAC
GGTAAATACATTGAAGCATTACTTTCTGCAAACAAAAGGACTGATGCAGAGGGAAAGATC
ACTGGGGTTTTGTGTTTTTTGCACGTGGCTAGTCCTGAACTTCAACACGCCATGCAGGTG
CAGAGAATATCGGAACAGGCTGCAGCTGATAGCCTCAAGAAATTGGCATATATTCGTCAG
CAGATCAGGAAGCCTTTAAATGGAATAATGTTCATTCAGAATCTGATGGACTCATCTGAG
CTAAGTCAAGACCAGAAAAAATTCCTGAGGACAAGCATGATGTGTCAAGAACAATTAACA
AAGATCGTTGATGACACTGATCTCGAGAGCATTGAGGAATGCTATATGGAATTGAATTCT
GGTGAGTTTAACCTAGGGGAAGTTTTGGAGGTTGTCATAAGTCAAGCGATGATTCTGAGC
CGGGAGCGTCGGGTGGAGATCATCTATGATTCACCTGCTGAAGTGTCGTCCATGCTTTTG
TATGGTGACAACTTGAGGCTTCAACAAGTCCTTTCAGATTTCTTAACAAATGCGCTTCTC
TTCACCCCTGCATTTGAAGGATCATCAGTTGCACTCAGAGTAATTCCAAGAAGGGAGTGT
ATAGGGACAAAGGTTCACATTGTACATCTTGAATTTCGGATTGCCCATCCAGCACCTGGG
ATCCCAGAAGACTTGATCCAACAGATGTTTCACCACAGCCAGGGTGTATCAAGGGAAGGT
CTTGGCCTATACATCAACCAAAAGCTTGTGAAGATCATGAACGGCACGGTTCAGTATCTC
AGAGAGGCACAGGGATCATCCTTCATCATTCTCATAGAGTTCCCATTGGCTCACTAG

Peptide Sequence

PEP ID

VIT_12s0057g00980.t01
PEP Infomation

pep chromosome:12X:12:9664313:9670137:-1 gene:VIT_12s0057g00980 transcript:VIT_12s0057g00980.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phytochrome [Source:UniProtKB/TrEMBL;Acc:F6HHP7]
Sequence

MSSKSTNKTNCSRSSSARSKHGARVVAQTPIDAQLHVNFEESERHFDYSASVDFNISSST
SDVPSSTVSAYLQKMQRGNLIQPFGCMIAVDEQNLTVLAYSENAPEMLDLAPHAVPSIEQ
QEALAIGTDVRTLFRSSGAAALQKAANFGEVNLLNPILVHCRNSGKPFYAILHRIDVGLI
IDLEPVNPADVPVTAAGALKSYKLAAKAISRLQSLPSGNISLLCDVLVKEASELTGYDRV
MVYKFHEDEHGEVIAECRKPDLEPYLGLHYPATDIPQASRFLFMKNKVRMICDCLAPPVK
VIQNKRLAQPLSLCGSTLRSPHGCHAQYMANMGSVASLVMSVTINEEDDDTESEQQKGRK
LWGLVVCHNTSPRFVPFPLRYACEFLVQVFGVQISKEMELAAQMKEKHILQTQTVLCDML
LRDAPVGIVTQSPNVMDLVRCDGAALYYQKKFWLLGVTPTEAQIRDIVEWLLEYHSGSTG
LSTDSLMEAGYPAASVLGDAVCGIAAVKINSNDFLFWFRSHTAKEIKWGGAKHDPDDKDD
GRKMHPRSSFKAFLEVVKRRSLPWEDVEMDAIHSLQLILRGSLQDKSADDSKMIVNVPSV
DASIKMADDLRIVTNEMVRLIETASVPILAVDAAGCINGWNNKAAELTGLIMQQAIGMPL
INLVENDSADMVKKMLSMALQGIEEQNVEIKLKTFGPQENNGPVILVVNACCSRDIKDNV
VGVCFVGQDITGQKMVMDKYTRIQGDYVGIVRNPSALIPPIFMMDEHGRCLEWNDAMQNL
SGLKREEATDRMLLGEVFTVNNFGCQVKDHDTLTKLRILLNGAIAGQDAQKLLFGFFDQH
GKYIEALLSANKRTDAEGKITGVLCFLHVASPELQHAMQVQRISEQAAADSLKKLAYIRQ
QIRKPLNGIMFIQNLMDSSELSQDQKKFLRTSMMCQEQLTKIVDDTDLESIEECYMELNS
GEFNLGEVLEVVISQAMILSRERRVEIIYDSPAEVSSMLLYGDNLRLQQVLSDFLTNALL
FTPAFEGSSVALRVIPRRECIGTKVHIVHLEFRIAHPAPGIPEDLIQQMFHHSQGVSREG
LGLYINQKLVKIMNGTVQYLREAQGSSFIILIEFPLAH

Transcript Sequence

Transcript ID

VIT_12s0057g00980.t01
Transcript Infomation

cdna chromosome:12X:12:9664313:9670137:-1 gene:VIT_12s0057g00980 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phytochrome [Source:UniProtKB/TrEMBL;Acc:F6HHP7]
Sequence

GGGAGAAGAAAAGATGTCCTCAAAGTCTACTAACAAGACGAATTGTTCTAGGAGCAGCTC
TGCTCGATCAAAACATGGCGCCCGTGTGGTGGCACAGACCCCAATTGATGCCCAGCTTCA
TGTGAACTTTGAGGAGTCTGAACGTCATTTTGATTACTCTGCTTCAGTTGACTTCAATAT
CTCAAGTTCCACTAGTGATGTCCCCTCTTCTACGGTCTCAGCTTACCTCCAAAAGATGCA
GAGGGGAAACCTGATCCAACCATTTGGCTGCATGATTGCAGTTGATGAGCAGAATCTCAC
AGTTCTTGCCTACAGCGAAAATGCCCCTGAAATGTTGGACTTAGCCCCACATGCTGTTCC
AAGCATTGAGCAGCAAGAGGCCTTGGCAATTGGAACAGATGTTCGGACACTCTTTCGATC
CTCGGGGGCAGCTGCCTTGCAGAAAGCAGCCAATTTTGGGGAAGTCAATCTCCTCAATCC
CATATTGGTCCATTGTAGAAACTCCGGTAAGCCCTTCTATGCAATTCTGCACCGAATTGA
TGTAGGGTTAATTATAGATTTGGAGCCAGTGAATCCAGCTGATGTCCCAGTTACAGCGGC
TGGGGCATTAAAGTCATATAAGCTTGCTGCCAAAGCCATTTCAAGATTGCAATCTTTGCC
AAGTGGGAATATATCACTGTTATGTGACGTGTTAGTCAAGGAAGCGAGTGAATTAACGGG
TTATGATCGAGTGATGGTGTATAAATTTCATGAGGATGAGCATGGGGAAGTTATTGCAGA
GTGCCGCAAACCCGACTTGGAACCCTATCTTGGTTTGCATTACCCAGCTACTGATATACC
ACAAGCTTCAAGATTCCTCTTCATGAAAAATAAGGTTAGGATGATATGTGATTGTTTGGC
CCCGCCTGTTAAAGTTATTCAAAACAAAAGATTAGCTCAGCCATTGAGCCTCTGTGGATC
CACATTGAGATCTCCTCATGGGTGTCATGCACAGTACATGGCGAATATGGGTTCGGTTGC
ATCGCTTGTGATGTCTGTGACCATCAATGAGGAAGATGATGATACAGAGAGTGAGCAACA
AAAGGGAAGAAAATTGTGGGGCTTGGTGGTTTGCCATAATACAAGCCCTAGGTTTGTTCC
GTTCCCTTTGAGGTATGCCTGTGAGTTTTTGGTTCAAGTTTTTGGTGTACAAATTAGCAA
GGAAATGGAGCTAGCTGCCCAAATGAAGGAGAAGCATATTTTGCAGACACAAACCGTGCT
TTGCGACATGCTCCTTAGAGATGCACCTGTAGGAATTGTTACTCAATCACCCAATGTGAT
GGACCTGGTTAGGTGTGATGGAGCTGCGCTCTACTACCAGAAGAAATTTTGGTTGCTTGG
GGTCACCCCTACAGAGGCACAGATTAGAGATATAGTTGAGTGGCTTCTTGAGTACCACAG
TGGGAGTACAGGCTTAAGTACTGATAGCCTGATGGAAGCTGGCTACCCAGCTGCCTCAGT
TCTTGGTGATGCAGTTTGTGGGATTGCTGCCGTTAAGATTAATTCAAACGATTTCCTTTT
TTGGTTCCGGTCCCACACGGCAAAGGAGATTAAGTGGGGTGGTGCAAAACATGATCCTGA
TGATAAGGATGATGGGAGAAAGATGCACCCTAGATCCTCATTCAAGGCTTTTCTGGAGGT
GGTAAAGCGGCGGAGCCTACCTTGGGAAGATGTGGAAATGGATGCCATCCATTCCTTGCA
GCTGATATTGAGAGGCTCCTTGCAGGATAAGAGCGCAGATGACTCTAAAATGATTGTGAA
TGTTCCATCAGTTGATGCCAGCATAAAAATGGCTGATGACTTGCGCATAGTCACAAATGA
AATGGTTCGTCTTATTGAAACAGCTTCTGTTCCCATCCTGGCTGTTGATGCCGCTGGTTG
CATAAATGGGTGGAATAACAAAGCGGCCGAGCTAACAGGATTGATCATGCAGCAAGCCAT
TGGCATGCCCTTAATTAATCTTGTTGAGAATGATTCAGCCGACATGGTGAAGAAGATGCT
CTCCATGGCATTGCAAGGTATAGAAGAGCAAAATGTTGAGATCAAACTCAAGACATTTGG
TCCCCAGGAAAACAATGGCCCTGTTATATTGGTAGTTAATGCATGTTGTAGCCGAGACAT
AAAGGATAATGTCGTAGGGGTTTGCTTCGTTGGGCAAGATATCACAGGGCAAAAGATGGT
TATGGACAAATATACTCGTATCCAAGGTGATTATGTTGGAATTGTGCGGAACCCATCTGC
ACTAATTCCTCCCATTTTTATGATGGACGAGCATGGTCGATGCTTGGAATGGAATGATGC
AATGCAAAACTTGTCTGGTCTGAAGAGAGAAGAAGCCACTGATAGGATGCTTCTCGGGGA
GGTTTTTACGGTCAATAATTTTGGTTGTCAGGTTAAAGATCATGACACATTAACCAAGCT
CAGGATATTACTAAATGGAGCCATTGCAGGTCAGGATGCACAGAAATTGTTATTTGGGTT
CTTTGATCAGCACGGTAAATACATTGAAGCATTACTTTCTGCAAACAAAAGGACTGATGC
AGAGGGAAAGATCACTGGGGTTTTGTGTTTTTTGCACGTGGCTAGTCCTGAACTTCAACA
CGCCATGCAGGTGCAGAGAATATCGGAACAGGCTGCAGCTGATAGCCTCAAGAAATTGGC
ATATATTCGTCAGCAGATCAGGAAGCCTTTAAATGGAATAATGTTCATTCAGAATCTGAT
GGACTCATCTGAGCTAAGTCAAGACCAGAAAAAATTCCTGAGGACAAGCATGATGTGTCA
AGAACAATTAACAAAGATCGTTGATGACACTGATCTCGAGAGCATTGAGGAATGCTATAT
GGAATTGAATTCTGGTGAGTTTAACCTAGGGGAAGTTTTGGAGGTTGTCATAAGTCAAGC
GATGATTCTGAGCCGGGAGCGTCGGGTGGAGATCATCTATGATTCACCTGCTGAAGTGTC
GTCCATGCTTTTGTATGGTGACAACTTGAGGCTTCAACAAGTCCTTTCAGATTTCTTAAC
AAATGCGCTTCTCTTCACCCCTGCATTTGAAGGATCATCAGTTGCACTCAGAGTAATTCC
AAGAAGGGAGTGTATAGGGACAAAGGTTCACATTGTACATCTTGAATTTCGGATTGCCCA
TCCAGCACCTGGGATCCCAGAAGACTTGATCCAACAGATGTTTCACCACAGCCAGGGTGT
ATCAAGGGAAGGTCTTGGCCTATACATCAACCAAAAGCTTGTGAAGATCATGAACGGCAC
GGTTCAGTATCTCAGAGAGGCACAGGGATCATCCTTCATCATTCTCATAGAGTTCCCATT
GGCTCACTAGAACAACAGCCAATGAATCCAGTGAGAGCTTGACACTGAGACTTCAACAAT
CTGCACAGCCACCTTCACAAGAACCCTACTCAATGGCATCTTGTGTTGGCAAAATGAGTT
CCGAAACAGCCCAGGATTGGACTGGACGACCCTTTGAAGGCTGTAAGTTGCTGGAGTATC
TGCAACTCAGGTTGGCATATTGGTTAATCATGGATTGAAAATCAGGGGCTGTTCGCTGAA
TTGCTCGAAGGATTATGCAAATGAAGAACACCCCTAAGTTGAGTGTAAAATTTTCATGGC
TTCCCACCTTCTGTACTTTATTTTTCTACTCTTTGTATCATCATTCTTAGGTTTCATTGT
ATGTTTTCCTCGTAAAGACTCAATTCATATAACTTTCATACACTGGAAGAAACAGTGCCA
GGCAAGTGAACATTGTATAGAGAAACCTCTTGATCAACGCTTTAGTAAAGTTTTCCTAAA
CTTGGATAAA