Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_12s0034g01000.t01
CDS Infomation

cds chromosome:12X:12:16837092:16844762:1 gene:VIT_12s0034g01000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ribosome assembly factor mrt4 [Source:UniProtKB/TrEMBL;Acc:D7T050]
Sequence

ATGCCTAAGTCCAAGCGTGATCGACCAGTTACATTATCCAAGACAAAGAAGAAGGGGAGG
GGACACAAAGAGTCCATAGTGAATTCGATAAGGCAGGCTGTGGAAAATTACAGTTCGATC
TATGTTTTCTCTTTTGAGAACATGAGAAATCTTAAATTCAAGGAATTCAGAGAGAAGCTC
AAATCTACCAGCAGGTTTTTCCTTGGATCAAATAAAGTCATGCAAATTGCCATTGGGCGT
TCAGTTGCTGATGAGATCAGACCAGGACTTCGTAAAGTTTCTAAGCTTCTTCATGGAGAT
ACTGGGCTCTTTTTTACTAATCTGCCTAAGGAAGAAGTCCAAAGGTTATTTAATGAATAT
GAAGAATATGATTTTGCAAGGACAGGAAGCACTGCAGTAGAAAAGGTGGAGCTTAAAGAA
GGTCCTCTTGATCAGTTCACACATGAGATGGAACCCTTCCTACGCAAGCAAGGGATGCCG
GTTCGGTTGAACAAAGGTGTGGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAAGAGGGA
ACACCATTGTCGCCTGAGTCAGCTCGCATACTGCGTCTACTTGGGATCAAGATGGCTACT
TTCCGACTTCACTTGGTTTGCAGATGGAGCCCAGATGAATTTGACCTCTACAAAGAAGGC
CTCGATGACTCAGATGTTGAATCCTCATAA

Peptide Sequence

PEP ID

VIT_12s0034g01000.t01
PEP Infomation

pep chromosome:12X:12:16837092:16844762:1 gene:VIT_12s0034g01000 transcript:VIT_12s0034g01000.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ribosome assembly factor mrt4 [Source:UniProtKB/TrEMBL;Acc:D7T050]
Sequence

MPKSKRDRPVTLSKTKKKGRGHKESIVNSIRQAVENYSSIYVFSFENMRNLKFKEFREKL
KSTSRFFLGSNKVMQIAIGRSVADEIRPGLRKVSKLLHGDTGLFFTNLPKEEVQRLFNEY
EEYDFARTGSTAVEKVELKEGPLDQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEG
TPLSPESARILRLLGIKMATFRLHLVCRWSPDEFDLYKEGLDDSDVESS

Transcript Sequence

Transcript ID

VIT_12s0034g01000.t01
Transcript Infomation

cdna chromosome:12X:12:16837092:16844762:1 gene:VIT_12s0034g01000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ribosome assembly factor mrt4 [Source:UniProtKB/TrEMBL;Acc:D7T050]
Sequence

TTGGGAGGTCGTAGGGTTTTAGAGAAACGGTAGAAGAAGAGGAAGAGGAAGCCGCCACTT
CACCATGCCTAAGTCCAAGCGTGATCGACCAGTTACATTATCCAAGACAAAGAAGAAGGG
GAGGGGACACAAAGAGTCCATAGTGAATTCGATAAGGCAGGCTGTGGAAAATTACAGTTC
GATCTATGTTTTCTCTTTTGAGAACATGAGAAATCTTAAATTCAAGGAATTCAGAGAGAA
GCTCAAATCTACCAGCAGGTTTTTCCTTGGATCAAATAAAGTCATGCAAATTGCCATTGG
GCGTTCAGTTGCTGATGAGATCAGACCAGGACTTCGTAAAGTTTCTAAGCTTCTTCATGG
AGATACTGGGCTCTTTTTTACTAATCTGCCTAAGGAAGAAGTCCAAAGGTTATTTAATGA
ATATGAAGAATATGATTTTGCAAGGACAGGAAGCACTGCAGTAGAAAAGGTGGAGCTTAA
AGAAGGTCCTCTTGATCAGTTCACACATGAGATGGAACCCTTCCTACGCAAGCAAGGGAT
GCCGGTTCGGTTGAACAAAGGTGTGGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAAGA
GGGAACACCATTGTCGCCTGAGTCAGCTCGCATACTGCGTCTACTTGGGATCAAGATGGC
TACTTTCCGACTTCACTTGGTTTGCAGATGGAGCCCAGATGAATTTGACCTCTACAAAGA
AGGCCTCGATGACTCAGATGTTGAATCCTCATAAAATACTGATGTGGGCATTGATCACAA
CTGTGACGGTGATGCTGAGTTTTTGTGCCAAGTGATACAGAAATGGTGTCTGAGTTTTGT
TTAGGGTCCCCTGGCCAACTCTGAGGTTATAGAAAGTGTTTTCTATTATATGACCTTCGT
TTGTAAGCTATTGCAGTTAATTTTAGGCTTGTGCTCTTTTTGAGGTATAACATTTTCCCC
GGAGAAGATTTTGCTTGTAAAATT