Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_12s0028g02500.t01
CDS Infomation

cds chromosome:12X:12:3207673:3217240:-1 gene:VIT_12s0028g02500 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGCTCTCCACAACCCTGCGCTGCGCTTGGTGCTCTTCATTATTCCCACCCCTTAGCTTC
AGGACAAAGCCCTTGTCGTCGTCGTCTTCTTCTTCTTCTTCTTTGCACTACTCTCCATGG
TCGGGTCTCCAGAGCTGGAGAGAGAATCCACTCAATAAAAACCGGCTCTGGGGACCCAAT
GGTCCAGAACCTTTACCACCATCGCCCTGCACATCACTTGAAGTCTGTGAGGGCCCCATG
GCTTTGGCTTCTTCTCTGGCTGGAATGGGCTCTCTGGTTCTCTCCACCAGTGACCCTCTC
ACCAAGTCCAAACTATCTCATCTCGCCTACTCTAGGTGGAGAACAGAGCATCTCCCCATT
GGGGACTCCCAAGCGCCCGATCGGCCTGCTCGCCCTGCCAAACCCCAGCTGGTTTCTCCA
AAGGAAATTCCAGCTCCCAAAAACTCAGGTTTGCCTCTAAATGCATACATGCTCCATAAT
CTTGCTCATGTGGAGCTAAATGCAATTGATTTGGCATGGGACACGGTTGTCCGCTTTTCA
CCTTACAGCAAGATTCTTGGAGAGGGCTTTTTTGCTGATTTTGCTCGTGTTGCTGATGAC
GAGAGTCGCCATTTTGCTTGGTGTTCACAGAGACTGGCTGAACTAGGTTTCAATTATGGA
GATATGCCTGCTCATAATCTTCTTTGGAGGGAATGTGCAAAATCATCTAACAATGTTGCT
GCACGTCTGGTGGCAATCCCACTGGTCCAGGAGGCTCGAGGACTGGATGCTGGGCCACGG
CTGGTGCAAAAACTCATTGGCTTTGGGGATTCTAGGACATCTAACATTGTAGCTAGAATT
GCTGATGAGGAAGTTGCACATGTTGCAGTTGGTGTCCACTGGTTTGTTTCGGTCTGCCAG
AAAATGGGCCGTGCTCCTTGCTCCACTTTCAAAGACTTGTTAAAAGAATACAATGTGGAA
TTGAAAGGACCCTTCAATTATTCAGCTCGAGATGAAGCTGGAATTCCTCGTGATTGGTAT
GACACATCATCTACATCTGAGGTTAAACAGGATAAAAGTGAGCCACTGTCCGAGGTTTAT
GAAAGGCTTGCTTGCATCATCTCTATGGAAAATGAGAACTCAAGTTTGAATAGGCCTCCT
GGATAA

Peptide Sequence

PEP ID

VIT_12s0028g02500.t01
PEP Infomation

pep chromosome:12X:12:3207673:3217240:-1 gene:VIT_12s0028g02500 transcript:VIT_12s0028g02500.t01 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MLSTTLRCAWCSSLFPPLSFRTKPLSSSSSSSSSLHYSPWSGLQSWRENPLNKNRLWGPN
GPEPLPPSPCTSLEVCEGPMALASSLAGMGSLVLSTSDPLTKSKLSHLAYSRWRTEHLPI
GDSQAPDRPARPAKPQLVSPKEIPAPKNSGLPLNAYMLHNLAHVELNAIDLAWDTVVRFS
PYSKILGEGFFADFARVADDESRHFAWCSQRLAELGFNYGDMPAHNLLWRECAKSSNNVA
ARLVAIPLVQEARGLDAGPRLVQKLIGFGDSRTSNIVARIADEEVAHVAVGVHWFVSVCQ
KMGRAPCSTFKDLLKEYNVELKGPFNYSARDEAGIPRDWYDTSSTSEVKQDKSEPLSEVY
ERLACIISMENENSSLNRPPG

Transcript Sequence

Transcript ID

VIT_12s0028g02500.t01
Transcript Infomation

cdna chromosome:12X:12:3207673:3217240:-1 gene:VIT_12s0028g02500 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

AATACAACTGCTGAAGCTCAGGCCCATGCTCTCCACAACCCTGCGCTGCGCTTGGTGCTC
TTCATTATTCCCACCCCTTAGCTTCAGGACAAAGCCCTTGTCGTCGTCGTCTTCTTCTTC
TTCTTCTTTGCACTACTCTCCATGGTCGGGTCTCCAGAGCTGGAGAGAGAATCCACTCAA
TAAAAACCGGCTCTGGGGACCCAATGGTCCAGAACCTTTACCACCATCGCCCTGCACATC
ACTTGAAGTCTGTGAGGGCCCCATGGCTTTGGCTTCTTCTCTGGCTGGAATGGGCTCTCT
GGTTCTCTCCACCAGTGACCCTCTCACCAAGTCCAAACTATCTCATCTCGCCTACTCTAG
GTGGAGAACAGAGCATCTCCCCATTGGGGACTCCCAAGCGCCCGATCGGCCTGCTCGCCC
TGCCAAACCCCAGCTGGTTTCTCCAAAGGAAATTCCAGCTCCCAAAAACTCAGGTTTGCC
TCTAAATGCATACATGCTCCATAATCTTGCTCATGTGGAGCTAAATGCAATTGATTTGGC
ATGGGACACGGTTGTCCGCTTTTCACCTTACAGCAAGATTCTTGGAGAGGGCTTTTTTGC
TGATTTTGCTCGTGTTGCTGATGACGAGAGTCGCCATTTTGCTTGGTGTTCACAGAGACT
GGCTGAACTAGGTTTCAATTATGGAGATATGCCTGCTCATAATCTTCTTTGGAGGGAATG
TGCAAAATCATCTAACAATGTTGCTGCACGTCTGGTGGCAATCCCACTGGTCCAGGAGGC
TCGAGGACTGGATGCTGGGCCACGGCTGGTGCAAAAACTCATTGGCTTTGGGGATTCTAG
GACATCTAACATTGTAGCTAGAATTGCTGATGAGGAAGTTGCACATGTTGCAGTTGGTGT
CCACTGGTTTGTTTCGGTCTGCCAGAAAATGGGCCGTGCTCCTTGCTCCACTTTCAAAGA
CTTGTTAAAAGAATACAATGTGGAATTGAAAGGACCCTTCAATTATTCAGCTCGAGATGA
AGCTGGAATTCCTCGTGATTGGTATGACACATCATCTACATCTGAGGTTAAACAGGATAA
AAGTGAGCCACTGTCCGAGGTTTATGAAAGGCTTGCTTGCATCATCTCTATGGAAAATGA
GAACTCAAGTTTGAATAGGCCTCCTGGATAAGTTTTGTTTGACACAATCAGCTCAAGCTT
GAAAATTCTCTCACATGTGGGCAGCTGGTACAAAGCAGGCTCTGCCCCTATACTCATATG
AATTCTGTTGTTTGATGTCATACCTCCAATACATCCAAGGCCAGGTGTTTGCTGAATCTG
TTTTATGTGCATCACAGAGTCTCAGCACAACATCAGACATATCAAACAATTCTACCTGAC
CTGCAGGAAGGTGTGAACTGGGGGACCACTGCTTTTCTTTTTCCAATTTTCTTCTCTTTG
GACATTTTTCCATTCATAATCAGGGTTTATTTTACTGTAAATATTGATAATTTTCAAACT
TACCCTTCTTCTTCAGTAGGTACTAATGCCCTGATAAAAATCTGAGTTGGAAG