Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_11s0052g00320.t01
CDS Infomation

cds chromosome:12X:11:17602801:17640086:1 gene:VIT_11s0052g00320 gene_biotype:protein_coding transcript_biotype:protein_coding description:Calcium-transporting ATPase [Source:UniProtKB/TrEMBL;Acc:D7SQF9]
Sequence

ATGAGTCGTTTCAAGGGCTCGCCGTACCGGCGGCAAGATTTGGAGGTCGGAGACAGCCGG
TCTGGAGGCTTCGACGGCGACGACGACGCCAGGGAAACTTCTTCTGGGCCCTTCGATATT
GATAGCACCAAGAATATCCCCATCGCACGGCTCCGACGTTGGAGGCAAGCGGCACTTGTG
CTAAATGCTTCTCGCCGATTTCGATACACATTGGACTTGAAAAAGGAAGAAGATAGGAAG
CAGATAATAAGGAAGATTAGAGCACATGCACAAGTTATACGGGCTGCATATCTTTTTAAA
GAAGCTGGGGATCGAGCAAATGGGATACCAATATCACCTCCAATCCCCAACGGTGATTAT
GGCATTGGACAAGAGGAGCTGGCTTCAATGACAAGGGATCACAATTCTAATGCTCTGCAG
CAATATGATGGGGTTAAAGGGTTAGCAGAGTTGCTAAAAACAAATCTAGAGAAGGGAATT
CTTGGAGATGATGCTGATTTACTACGACGAAGGAATGCATTTGGATCAAACACTTATCCC
CGAAAAAAAGGAAGGAGTTTCTGGATGTTTCTCTGGGAAGCTTGGCAAGATTTAACCTTA
ATCATCTTGATGATAGCTGCAATTGCTTCCTTGGCGCTGGGTATAAAGACAGAGGGTATT
AAAGAAGGATGGTATGATGGGGGGAGCATTGCCTTTGCAGTTATTCTTGTTATAGTTGTT
ACAGCTGTAAGTGATTACAGACAATCCCTTCAATTTCAAAGTCTAAATGATGAAAAGAGA
AATATACATATGGAGATCATTAGAGGCGGTAGAAGAGTTGAGGTTTCAATATTTGATATT
GTCGTTGGTGATGTTGTACCCCTCAACATAGGGAACCAGGTCCCTGCTGATGGAATTTTG
ATTTCTGGTCACTCTCTTGCAATTGATGAATCAAGCATGACTGGAGAGAGCAAGATTGTT
CACAAGGACTCAAAGGCACCATTTCTAATGGCGGGCTGCAAAGTAGCAGATGGGAGTGGC
ATTATGCTGGTAACAAGTGTTGGGATAAATACTGAATGGGGATTGCTCATGGCTAGTATA
TCAGAAGACACTGGTGAAGAGACGCCATTGCAGGTACGATTAAATGGGGTTGCGACTTTC
ATTGGTATAGTTGGGCTCCTAGTGGCTTTGGTTGTCTTGGTTGTTCTTTTGGCAAGGTAC
TTTACTGGCCATACCAAAAATTCAGATGGAAGTAAGCAATTTATTCCAGGCCGGACAGGT
GTTGGTGATGCGGTAGATGGAGCAATTAAAATTGTTACTGTTGCGGTCACAATTGTAGTT
GTTGCAGTGCCTGAGGGGCTTCCTTTAGCTGTTACCTTAACCCTTGCCTACTCAATGAGA
AAAATGATGGTTGACAAAGCTTTGGTACGGAGGCTTTCTGCTTGTGAGACCATGGGCTCT
TCCACGACTATTTGCAGTGATAAGACAGGAACTCTAACTTTGAATCAGATGACTGTTGTT
GTGGCTTATGCTGGTGGGAAGAAAATTGATACACCGGATAGAGGCTCACTCTCGTCTTCC
CTGCTATCCTCTCTACTTATTGAAGGCATTGCACAAAATACAAATGGCAGTGTTTTTATT
CCTGAGGGTGGTGGAGATGTAGAGGTTTCTGGGTCCCCAACAGAAAAGGCCATTCTCAAT
TGGGGAATCAAGATTGGGATGAATTTTGAAGCTGTCAGATCAGGCTCTTCAATTATCCAA
GTTTTCCCATTCAACTCAGAGAAAAAACGTGGGGGTGTTGCTATCAAACTGCCTGATTCT
CAAGTTCACTTGCACTGGAAAGGGGCGGCTGAAATAGTGTTAGCCTCCTGTACTAGGTAT
ATTGATGAAAATGACAATGTGGTCCCAATGACTGAAGATAAGGTGTTATTTTTCAAGAAA
GCCATTGAAGATATGGCTGCAGGTAGTTTGCGTTGCGTTGCCATTGCATACAGACCCTAT
GAAATGGAAAACGTCCCAACTGATGAAGAGCAACTGGATCAGTGGGTACTTCCTGAGGAT
GACCTTGTTTTGCTGGCTATTGTTGGTATAAAGGATCCTTGCCGACCTGGTGTGAGAGAA
GCAGTGCAACTATGCCAAAAAGCTGGTGTCAAGGTACGGATGGTTACAGGTGACAATCTT
CAAACAGCTAAAGCAATAGCCTTGGAATGTGGAATACTAGTTTCAGATGCAGATGCTACC
GAGCCAAATCTCATCGAAGGAAAGTCATTTCGTGCCTTACCTGAATTGCAAAGACAGGAT
ATTGCTGATAAGATATCGGTCATGGGAAGGTCTTCTCCAAATGACAAGCTTCTTCTTGTG
CAAGCATTGAAAAAGAAAGGGCATGTTGTTGCTGTAACTGGAGATGGAACTAATGATGCT
CCTGCACTACACGAGGCAGATATTGGTCTTGCAATGGGCATTTCAGGAACAGAGGTTGCA
AAAGAGAGCTCTGACATCATTATCTTGGATGACAATTTTGCGTCAGTTGTCAAGGTTGTC
AGATGGGGACGATCTGTATATGCAAATATACAGAAATTCATCCAGTTTCAGCTCACAGTT
AATGTTGCAGCTCTAATAATTAATGTCGTGGCAGCAATTTCCTCTGGCAATGTTCCACTA
AATGCAGTGCAGCTCCTCTGGGTTAATCTTATCATGGATACTCTTGGAGCACTTGCATTG
GCCACTGAACCACCAACAGATCACCTGATGCACAGGCCTCCAGTTGGTCGAAGGGAACCA
TTGATAACAAATATCATGTGGAGGAATTTGTTGATTCAGGCCCTATATCAAGTGATCGTC
CTGCTTGTCCTCAATTTCCGAGGTACAAGTATTCTGAAGTTAGAAGGTGACACTCCTGAA
CGTGCTAGCAAAGAGAAGAATACAGTGATATTCAATGCTTTTGTTCTTTGTCAGATATTC
AATGAGTTTAATGCACGGAAGCCGGATGAAATTAATGTATTCAAAGGAGTCACTACCAAC
CGTCTTTTTATTGGGATAGTGGGAATAACTCTCGTGCTTCAGATCCTTATCATCGAATTT
CTTGGGAAGTTTACATCAACTGTCAGATTGAATTGGCAGCTTTGGCTTGTTTGTATCGGT
ATTGGTATTATCAGTTGGCCTCTTGCGGCTCTTGGAAAACTGATGCCAGTCCCAAAAACT
CCTCTTAGCAAGTTCTTTACAAGGATATGTCGCCGCAGGCGAGATTCCCAAATAAGTAGA
TAG

Peptide Sequence

PEP ID

VIT_11s0052g00320.t01
PEP Infomation

pep chromosome:12X:11:17602801:17640086:1 gene:VIT_11s0052g00320 transcript:VIT_11s0052g00320.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Calcium-transporting ATPase [Source:UniProtKB/TrEMBL;Acc:D7SQF9]
Sequence

MSRFKGSPYRRQDLEVGDSRSGGFDGDDDARETSSGPFDIDSTKNIPIARLRRWRQAALV
LNASRRFRYTLDLKKEEDRKQIIRKIRAHAQVIRAAYLFKEAGDRANGIPISPPIPNGDY
GIGQEELASMTRDHNSNALQQYDGVKGLAELLKTNLEKGILGDDADLLRRRNAFGSNTYP
RKKGRSFWMFLWEAWQDLTLIILMIAAIASLALGIKTEGIKEGWYDGGSIAFAVILVIVV
TAVSDYRQSLQFQSLNDEKRNIHMEIIRGGRRVEVSIFDIVVGDVVPLNIGNQVPADGIL
ISGHSLAIDESSMTGESKIVHKDSKAPFLMAGCKVADGSGIMLVTSVGINTEWGLLMASI
SEDTGEETPLQVRLNGVATFIGIVGLLVALVVLVVLLARYFTGHTKNSDGSKQFIPGRTG
VGDAVDGAIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMVDKALVRRLSACETMGS
STTICSDKTGTLTLNQMTVVVAYAGGKKIDTPDRGSLSSSLLSSLLIEGIAQNTNGSVFI
PEGGGDVEVSGSPTEKAILNWGIKIGMNFEAVRSGSSIIQVFPFNSEKKRGGVAIKLPDS
QVHLHWKGAAEIVLASCTRYIDENDNVVPMTEDKVLFFKKAIEDMAAGSLRCVAIAYRPY
EMENVPTDEEQLDQWVLPEDDLVLLAIVGIKDPCRPGVREAVQLCQKAGVKVRMVTGDNL
QTAKAIALECGILVSDADATEPNLIEGKSFRALPELQRQDIADKISVMGRSSPNDKLLLV
QALKKKGHVVAVTGDGTNDAPALHEADIGLAMGISGTEVAKESSDIIILDDNFASVVKVV
RWGRSVYANIQKFIQFQLTVNVAALIINVVAAISSGNVPLNAVQLLWVNLIMDTLGALAL
ATEPPTDHLMHRPPVGRREPLITNIMWRNLLIQALYQVIVLLVLNFRGTSILKLEGDTPE
RASKEKNTVIFNAFVLCQIFNEFNARKPDEINVFKGVTTNRLFIGIVGITLVLQILIIEF
LGKFTSTVRLNWQLWLVCIGIGIISWPLAALGKLMPVPKTPLSKFFTRICRRRRDSQISR

Transcript Sequence

Transcript ID

VIT_11s0052g00320.t01
Transcript Infomation

cdna chromosome:12X:11:17602801:17640086:1 gene:VIT_11s0052g00320 gene_biotype:protein_coding transcript_biotype:protein_coding description:Calcium-transporting ATPase [Source:UniProtKB/TrEMBL;Acc:D7SQF9]
Sequence

ATGGAGGCTGTTGACAAATCTTACAAGGAATCAGATTTCCACCCAGCTGGGGCCAATTCG
GAGAGACTTTCCTTCATCAATTGAAGACTTCCAACAAGTTACCTAATAAAGCAAGGGAAT
AAATCGAGGATACTTTCTCAACAACGCTACGTTTTCTTGTGATATTTAACGTGAAGGCTT
AGGACAAAAAATGAGTCGTTTCAAGGGCTCGCCGTACCGGCGGCAAGATTTGGAGGTCGG
AGACAGCCGGTCTGGAGGCTTCGACGGCGACGACGACGCCAGGGAAACTTCTTCTGGGCC
CTTCGATATTGATAGCACCAAGAATATCCCCATCGCACGGCTCCGACGTTGGAGGCAAGC
GGCACTTGTGCTAAATGCTTCTCGCCGATTTCGATACACATTGGACTTGAAAAAGGAAGA
AGATAGGAAGCAGATAATAAGGAAGATTAGAGCACATGCACAAGTTATACGGGCTGCATA
TCTTTTTAAAGAAGCTGGGGATCGAGCAAATGGGATACCAATATCACCTCCAATCCCCAA
CGGTGATTATGGCATTGGACAAGAGGAGCTGGCTTCAATGACAAGGGATCACAATTCTAA
TGCTCTGCAGCAATATGATGGGGTTAAAGGGTTAGCAGAGTTGCTAAAAACAAATCTAGA
GAAGGGAATTCTTGGAGATGATGCTGATTTACTACGACGAAGGAATGCATTTGGATCAAA
CACTTATCCCCGAAAAAAAGGAAGGAGTTTCTGGATGTTTCTCTGGGAAGCTTGGCAAGA
TTTAACCTTAATCATCTTGATGATAGCTGCAATTGCTTCCTTGGCGCTGGGTATAAAGAC
AGAGGGTATTAAAGAAGGATGGTATGATGGGGGGAGCATTGCCTTTGCAGTTATTCTTGT
TATAGTTGTTACAGCTGTAAGTGATTACAGACAATCCCTTCAATTTCAAAGTCTAAATGA
TGAAAAGAGAAATATACATATGGAGATCATTAGAGGCGGTAGAAGAGTTGAGGTTTCAAT
ATTTGATATTGTCGTTGGTGATGTTGTACCCCTCAACATAGGGAACCAGGTCCCTGCTGA
TGGAATTTTGATTTCTGGTCACTCTCTTGCAATTGATGAATCAAGCATGACTGGAGAGAG
CAAGATTGTTCACAAGGACTCAAAGGCACCATTTCTAATGGCGGGCTGCAAAGTAGCAGA
TGGGAGTGGCATTATGCTGGTAACAAGTGTTGGGATAAATACTGAATGGGGATTGCTCAT
GGCTAGTATATCAGAAGACACTGGTGAAGAGACGCCATTGCAGGTACGATTAAATGGGGT
TGCGACTTTCATTGGTATAGTTGGGCTCCTAGTGGCTTTGGTTGTCTTGGTTGTTCTTTT
GGCAAGGTACTTTACTGGCCATACCAAAAATTCAGATGGAAGTAAGCAATTTATTCCAGG
CCGGACAGGTGTTGGTGATGCGGTAGATGGAGCAATTAAAATTGTTACTGTTGCGGTCAC
AATTGTAGTTGTTGCAGTGCCTGAGGGGCTTCCTTTAGCTGTTACCTTAACCCTTGCCTA
CTCAATGAGAAAAATGATGGTTGACAAAGCTTTGGTACGGAGGCTTTCTGCTTGTGAGAC
CATGGGCTCTTCCACGACTATTTGCAGTGATAAGACAGGAACTCTAACTTTGAATCAGAT
GACTGTTGTTGTGGCTTATGCTGGTGGGAAGAAAATTGATACACCGGATAGAGGCTCACT
CTCGTCTTCCCTGCTATCCTCTCTACTTATTGAAGGCATTGCACAAAATACAAATGGCAG
TGTTTTTATTCCTGAGGGTGGTGGAGATGTAGAGGTTTCTGGGTCCCCAACAGAAAAGGC
CATTCTCAATTGGGGAATCAAGATTGGGATGAATTTTGAAGCTGTCAGATCAGGCTCTTC
AATTATCCAAGTTTTCCCATTCAACTCAGAGAAAAAACGTGGGGGTGTTGCTATCAAACT
GCCTGATTCTCAAGTTCACTTGCACTGGAAAGGGGCGGCTGAAATAGTGTTAGCCTCCTG
TACTAGGTATATTGATGAAAATGACAATGTGGTCCCAATGACTGAAGATAAGGTGTTATT
TTTCAAGAAAGCCATTGAAGATATGGCTGCAGGTAGTTTGCGTTGCGTTGCCATTGCATA
CAGACCCTATGAAATGGAAAACGTCCCAACTGATGAAGAGCAACTGGATCAGTGGGTACT
TCCTGAGGATGACCTTGTTTTGCTGGCTATTGTTGGTATAAAGGATCCTTGCCGACCTGG
TGTGAGAGAAGCAGTGCAACTATGCCAAAAAGCTGGTGTCAAGGTACGGATGGTTACAGG
TGACAATCTTCAAACAGCTAAAGCAATAGCCTTGGAATGTGGAATACTAGTTTCAGATGC
AGATGCTACCGAGCCAAATCTCATCGAAGGAAAGTCATTTCGTGCCTTACCTGAATTGCA
AAGACAGGATATTGCTGATAAGATATCGGTCATGGGAAGGTCTTCTCCAAATGACAAGCT
TCTTCTTGTGCAAGCATTGAAAAAGAAAGGGCATGTTGTTGCTGTAACTGGAGATGGAAC
TAATGATGCTCCTGCACTACACGAGGCAGATATTGGTCTTGCAATGGGCATTTCAGGAAC
AGAGGTTGCAAAAGAGAGCTCTGACATCATTATCTTGGATGACAATTTTGCGTCAGTTGT
CAAGGTTGTCAGATGGGGACGATCTGTATATGCAAATATACAGAAATTCATCCAGTTTCA
GCTCACAGTTAATGTTGCAGCTCTAATAATTAATGTCGTGGCAGCAATTTCCTCTGGCAA
TGTTCCACTAAATGCAGTGCAGCTCCTCTGGGTTAATCTTATCATGGATACTCTTGGAGC
ACTTGCATTGGCCACTGAACCACCAACAGATCACCTGATGCACAGGCCTCCAGTTGGTCG
AAGGGAACCATTGATAACAAATATCATGTGGAGGAATTTGTTGATTCAGGCCCTATATCA
AGTGATCGTCCTGCTTGTCCTCAATTTCCGAGGTACAAGTATTCTGAAGTTAGAAGGTGA
CACTCCTGAACGTGCTAGCAAAGAGAAGAATACAGTGATATTCAATGCTTTTGTTCTTTG
TCAGATATTCAATGAGTTTAATGCACGGAAGCCGGATGAAATTAATGTATTCAAAGGAGT
CACTACCAACCGTCTTTTTATTGGGATAGTGGGAATAACTCTCGTGCTTCAGATCCTTAT
CATCGAATTTCTTGGGAAGTTTACATCAACTGTCAGATTGAATTGGCAGCTTTGGCTTGT
TTGTATCGGTATTGGTATTATCAGTTGGCCTCTTGCGGCTCTTGGAAAACTGATGCCAGT
CCCAAAAACTCCTCTTAGCAAGTTCTTTACAAGGATATGTCGCCGCAGGCGAGATTCCCA
AATAAGTAGATAGAAGGCTTGACAATTCACTGACATCAACACGTTATAAAGAATACAAGC
TCCAAAGTCAATTATCCTCTGTTGGGTGCACGGTTTACATGGGATCTCAGCACCACTTTT
GTATCTTGCCTAACTGCTGTAATGCCTTAGCCACTCGAGTTATTACATGGATTGTGGAAA
AACCGGCTACCCGCAAGGTTCTGTTGTTTTAGACATTGAACCTTGCTTTTTATTGATATT
GTGCTAA