Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_11s0016g05900.t01
CDS Infomation

cds chromosome:12X:11:5503422:5512244:-1 gene:VIT_11s0016g05900 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGTCTGGAGGAGGGACACAGAAGAGCTTGAGGAAGGCACTTGGAGCCATCAAGGACAGC
ACTACTGTCGGATTGGCTAAAGTAAATAGTGATTACAAGGAATTGGACATTGCCATTGTT
AAGGCCACAAATCATGTTGAGCGCCCAGCAAAAGAAAAACACATTAGAGCTATCTTTTCT
GCAATTTCAGCTACAAGGCCTCGGGCTGATGTTGCATACTGCATCCATGCTCTTGCCAGA
CGGTTATCCAAGACACATAATTGGGCGGTTGCATTGAAAACTCTAGTTGTTATTCATCGT
GCTTTGAGGGAAGTGGATCCCACATTCCATGAAGAACTCATTAATTATGGCAGGAGTAGA
AGCCATATGCTAAACTTGGCTCATTTCAAAGATGATTCTAGTCCAAATGCATGGGATTAT
TCTGCATGGGTACGCACTTATGCCTTATTCTTGGAGGAGAGGCTGGAATGCTTTCGTGTG
CTGAAGTATGATATTGAGACAGATCGTCCTAGAACCAAAGAGCTGGACACTGTTGAGTTG
CTTGAGCAGCTACCAGCTTTGCAACAGCTTCTATTTCGTGTTCTTGGTTGCCAGCCACAC
GGAGCAGCAGTTCATAATATTGTGATTCAGTTGGCACTCTCAATGGTCGCTTTGGAAAGC
ATTAAGATATACAGTGCCATAAGCGATGGTACAGTTAATTTGGTTGACAAGTTCTTTGAG
ATGCAACGAAATGATGCTGTGAAGGCTTTGGAGATATACCGAAGAGCAGGGAGTCAGGCG
GAGAAACTATCAGAATTTTATGAAATATGTAAGAGTCTTGACATTGCACGTGGAGAAAGG
TTTATTAAGATCGAGCAGCCCCCTGCATCATTTTTACAAGCCATGGAAGAGTATGTGAGG
GATGCTCCACGAGCTTCAACAGTTCGCAAGGATCAGGAAACAAAGCAGGTGGTTAGTGAG
AAACTTGCTGCTCCTAAAGTAGTCTTATCCATAGAATACAACAAAGCCCCAGAAGTGCAG
GAGGAGCATCCTCCATCTCCGCCTCCACCTGAACCAGTAAAAGTGGAAATGCCTGTTGTT
GAACCACCGGATCTGTTGGGCTTAGATGATCCCATTCCAAATACTGCAGAATTAGATGAG
AAGAATGCCATGGCTTTGGCTATTGTTCCTGTTGCTGAAACACCACCTTCTGCTGGTCCT
AACCCAGCCAATGGAACTACAGGCTGGGAATTGGCACTTGTTACCGCTCCAAGCTCAAAT
GAGAACGCCACAGCTGCTAGCAAGCTGGCTGGAGGACTAGACATGCTTACGCTAGATAGC
CTATACGATGATGCAATAAGAAGAAACAACCAGAATGTAAGCTACAACCCATGGCAACCA
GTCCCAATGGGTGGCCCCATGATGCAGCAAACAGCACACGACCCATTCTTTGCCTCCAAT
GCAGTGGCTGCACCACCAAATGTGCAGATGGCAGCAATGGGCAACCAGCAGCAGGCTTTT
ATCAGCAGCAACAGCAACAGCAGATGA

Peptide Sequence

PEP ID

VIT_11s0016g05900.t01
PEP Infomation

pep chromosome:12X:11:5503422:5512244:-1 gene:VIT_11s0016g05900 transcript:VIT_11s0016g05900.t01 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MSGGGTQKSLRKALGAIKDSTTVGLAKVNSDYKELDIAIVKATNHVERPAKEKHIRAIFS
AISATRPRADVAYCIHALARRLSKTHNWAVALKTLVVIHRALREVDPTFHEELINYGRSR
SHMLNLAHFKDDSSPNAWDYSAWVRTYALFLEERLECFRVLKYDIETDRPRTKELDTVEL
LEQLPALQQLLFRVLGCQPHGAAVHNIVIQLALSMVALESIKIYSAISDGTVNLVDKFFE
MQRNDAVKALEIYRRAGSQAEKLSEFYEICKSLDIARGERFIKIEQPPASFLQAMEEYVR
DAPRASTVRKDQETKQVVSEKLAAPKVVLSIEYNKAPEVQEEHPPSPPPPEPVKVEMPVV
EPPDLLGLDDPIPNTAELDEKNAMALAIVPVAETPPSAGPNPANGTTGWELALVTAPSSN
ENATAASKLAGGLDMLTLDSLYDDAIRRNNQNVSYNPWQPVPMGGPMMQQTAHDPFFASN
AVAAPPNVQMAAMGNQQQAFISSNSNSR

Transcript Sequence

Transcript ID

VIT_11s0016g05900.t01
Transcript Infomation

cdna chromosome:12X:11:5503422:5512244:-1 gene:VIT_11s0016g05900 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

GCCGACGACTCAACCAAACCATACTTACATTTGCCGACTTTTCTTGGTCGCACAACCAGA
AGCTCTCAACTTCTGCTCTCTCTTTCTCTCTCTTCTTTTTCTCTCCTCCTCCTTTAGGGT
TTTGTTTTGGAATTTTAGAACTGAGGAGAGGGAATGTCTGGAGGAGGGACACAGAAGAGC
TTGAGGAAGGCACTTGGAGCCATCAAGGACAGCACTACTGTCGGATTGGCTAAAGTAAAT
AGTGATTACAAGGAATTGGACATTGCCATTGTTAAGGCCACAAATCATGTTGAGCGCCCA
GCAAAAGAAAAACACATTAGAGCTATCTTTTCTGCAATTTCAGCTACAAGGCCTCGGGCT
GATGTTGCATACTGCATCCATGCTCTTGCCAGACGGTTATCCAAGACACATAATTGGGCG
GTTGCATTGAAAACTCTAGTTGTTATTCATCGTGCTTTGAGGGAAGTGGATCCCACATTC
CATGAAGAACTCATTAATTATGGCAGGAGTAGAAGCCATATGCTAAACTTGGCTCATTTC
AAAGATGATTCTAGTCCAAATGCATGGGATTATTCTGCATGGGTACGCACTTATGCCTTA
TTCTTGGAGGAGAGGCTGGAATGCTTTCGTGTGCTGAAGTATGATATTGAGACAGATCGT
CCTAGAACCAAAGAGCTGGACACTGTTGAGTTGCTTGAGCAGCTACCAGCTTTGCAACAG
CTTCTATTTCGTGTTCTTGGTTGCCAGCCACACGGAGCAGCAGTTCATAATATTGTGATT
CAGTTGGCACTCTCAATGGTCGCTTTGGAAAGCATTAAGATATACAGTGCCATAAGCGAT
GGTACAGTTAATTTGGTTGACAAGTTCTTTGAGATGCAACGAAATGATGCTGTGAAGGCT
TTGGAGATATACCGAAGAGCAGGGAGTCAGGCGGAGAAACTATCAGAATTTTATGAAATA
TGTAAGAGTCTTGACATTGCACGTGGAGAAAGGTTTATTAAGATCGAGCAGCCCCCTGCA
TCATTTTTACAAGCCATGGAAGAGTATGTGAGGGATGCTCCACGAGCTTCAACAGTTCGC
AAGGATCAGGAAACAAAGCAGGTGGTTAGTGAGAAACTTGCTGCTCCTAAAGTAGTCTTA
TCCATAGAATACAACAAAGCCCCAGAAGTGCAGGAGGAGCATCCTCCATCTCCGCCTCCA
CCTGAACCAGTAAAAGTGGAAATGCCTGTTGTTGAACCACCGGATCTGTTGGGCTTAGAT
GATCCCATTCCAAATACTGCAGAATTAGATGAGAAGAATGCCATGGCTTTGGCTATTGTT
CCTGTTGCTGAAACACCACCTTCTGCTGGTCCTAACCCAGCCAATGGAACTACAGGCTGG
GAATTGGCACTTGTTACCGCTCCAAGCTCAAATGAGAACGCCACAGCTGCTAGCAAGCTG
GCTGGAGGACTAGACATGCTTACGCTAGATAGCCTATACGATGATGCAATAAGAAGAAAC
AACCAGAATGTAAGCTACAACCCATGGCAACCAGTCCCAATGGGTGGCCCCATGATGCAG
CAAACAGCACACGACCCATTCTTTGCCTCCAATGCAGTGGCTGCACCACCAAATGTGCAG
ATGGCAGCAATGGGCAACCAGCAGCAGGCTTTTATCAGCAGCAACAGCAACAGCAGATGA
TGATGATGATGGGTCAACAGCAACAACAGCCTTTAAATCCTTTTGGAAATCCATATGGAG
CCACTGCCCACCCCTATGGCTCAGGTATGCCTGTTCAAACCCACAATCCTTATTCAGGCT
TTATTTAAACAGATGCCATGGAAAGAGAGCTGTTCACTTTCTGGAAACACAAGAAAAAGG
AAAAACACAGGAGAAGAGCCGGTTTTTGATTTCAAAGATTGGAGACACATGTGAAGGATA
AACTGATGTGTACCATATGTTGTGTATGTTCATTAGCTAGAACGAAATTTGTTGTGTAAT
AAGCAGCGAGAAGGAGCGTTTTGGATCATTGATTATTTACATTGAACAAGATTGGTAATA
ATGATTTTTGCGACACAAATTTTTTTGAA