Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_11s0016g04560.t01
CDS Infomation

cds chromosome:12X:11:3855078:3862460:-1 gene:VIT_11s0016g04560 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGGCGTCCATGTCTAGATTTGTGCTCAAAGACTGCAAATTGCAGCCATTTGATGCTCTT
TATGGACCAAGTTCATGTTCTCTTGCAAGGAGGATTCACACCCGTGTGGAAGTAAGGGGT
GGATGTTCATTACCTGAAAAGGGTAGAAATTTGGCAATCCAAAACAAGCAGCACAGTTCA
ATTGTTGCTCTTTCGGGCCCTTCCTCGATTATTCAAGCTTCAAGGAACTCCCATATTTTG
TGCAAGGCAGCAGCAAATGTGTCTGGAGATGTCCCTGGTAACACTCCTGCTGGAATGAGC
CAATATGAGAGAATAATTGAAACATTAACAACTCTTTTTCCTGTGTGGGTCATATTAGGC
ACCGTTATTGGCATCTACAAGCCTGCTGCGGTAACTTGGCTAGAAACAGACCTTTTCACA
ATTTGCTTGGGCTTTCTAATGCTCTCAATGGGATTGACATTGACATTCGAGGATTTTAGA
CGATGTCTGCGGAACCCATGGACTGTGGGTGTAGGATTTCTTGCTCAATACTTAATCAAA
CCCATGTTAGGCTTCTTTATTGTGATGACTCTAAAACTGTCTGCGCCTCTTGCAACTGGT
CTTATTTTGGTCTCATGCTGCCCTGGAGGCCAGGCATCCAATGTTGCAACCTATATATCT
AAAGGGAATGTAGCACTCTCTGTCCTCATGACAACTTGTTCAACTATTGGAGCTATTGTT
ATGACACCACTCCTTACAAAGCTTCTTGCTGGTCAGCTTGTACCAGTTGATGCAGCGGGC
CTGGCGATCAGCACTTTCCAGGTTGTTTTAGTGCCAACCGTTATTGGAGTGTTGTCAAAT
GAGTTCTTCCCCAAATTCACATCAAAAATTGTCACTGTAACACCTTTAGTTGGAGTTATT
CTTACTACTCTACTTTGTGCAAGCCCTATTGGAAAAGTTTCAGATGTCTTGAAAACTCAA
GGGGCACAACTAATTTTGCCTGTGGCCATCCTACATGCTGCTGCATTTGCACTTGGTTAT
TGGGTTTCAAAAATATCATTTGGGGAATCCACTTCACGTACCATTTCCATCGAATGTGGG
ATGCAGAGTTCTGCGCTTGGATTTCTACTTGCCCAGAAACATTTCACAAATCCTCTTGTG
GCCGTTCCTTCTGCTGTAAGCGTAGTCTGCATGGCGCTTGGTGGCAGTGCTCTTGCCGTC
TTCTGGAGGAACCAGCCAATTCCTGTCGATGACAAAGATGACTTTAAAGAATGA

Peptide Sequence

PEP ID

VIT_11s0016g04560.t01
PEP Infomation

pep chromosome:12X:11:3855078:3862460:-1 gene:VIT_11s0016g04560 transcript:VIT_11s0016g04560.t01 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MASMSRFVLKDCKLQPFDALYGPSSCSLARRIHTRVEVRGGCSLPEKGRNLAIQNKQHSS
IVALSGPSSIIQASRNSHILCKAAANVSGDVPGNTPAGMSQYERIIETLTTLFPVWVILG
TVIGIYKPAAVTWLETDLFTICLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIK
PMLGFFIVMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIV
MTPLLTKLLAGQLVPVDAAGLAISTFQVVLVPTVIGVLSNEFFPKFTSKIVTVTPLVGVI
LTTLLCASPIGKVSDVLKTQGAQLILPVAILHAAAFALGYWVSKISFGESTSRTISIECG
MQSSALGFLLAQKHFTNPLVAVPSAVSVVCMALGGSALAVFWRNQPIPVDDKDDFKE

Transcript Sequence

Transcript ID

VIT_11s0016g04560.t01
Transcript Infomation

cdna chromosome:12X:11:3855078:3862460:-1 gene:VIT_11s0016g04560 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATCCATTATTCCTCTTTGATCCTCTTCTTCTGGGTTCATTGGTTTTTTCAATGGCGTCCA
TGTCTAGATTTGTGCTCAAAGACTGCAAATTGCAGCCATTTGATGCTCTTTATGGACCAA
GTTCATGTTCTCTTGCAAGGAGGATTCACACCCGTGTGGAAGTAAGGGGTGGATGTTCAT
TACCTGAAAAGGGTAGAAATTTGGCAATCCAAAACAAGCAGCACAGTTCAATTGTTGCTC
TTTCGGGCCCTTCCTCGATTATTCAAGCTTCAAGGAACTCCCATATTTTGTGCAAGGCAG
CAGCAAATGTGTCTGGAGATGTCCCTGGTAACACTCCTGCTGGAATGAGCCAATATGAGA
GAATAATTGAAACATTAACAACTCTTTTTCCTGTGTGGGTCATATTAGGCACCGTTATTG
GCATCTACAAGCCTGCTGCGGTAACTTGGCTAGAAACAGACCTTTTCACAATTTGCTTGG
GCTTTCTAATGCTCTCAATGGGATTGACATTGACATTCGAGGATTTTAGACGATGTCTGC
GGAACCCATGGACTGTGGGTGTAGGATTTCTTGCTCAATACTTAATCAAACCCATGTTAG
GCTTCTTTATTGTGATGACTCTAAAACTGTCTGCGCCTCTTGCAACTGGTCTTATTTTGG
TCTCATGCTGCCCTGGAGGCCAGGCATCCAATGTTGCAACCTATATATCTAAAGGGAATG
TAGCACTCTCTGTCCTCATGACAACTTGTTCAACTATTGGAGCTATTGTTATGACACCAC
TCCTTACAAAGCTTCTTGCTGGTCAGCTTGTACCAGTTGATGCAGCGGGCCTGGCGATCA
GCACTTTCCAGGTTGTTTTAGTGCCAACCGTTATTGGAGTGTTGTCAAATGAGTTCTTCC
CCAAATTCACATCAAAAATTGTCACTGTAACACCTTTAGTTGGAGTTATTCTTACTACTC
TACTTTGTGCAAGCCCTATTGGAAAAGTTTCAGATGTCTTGAAAACTCAAGGGGCACAAC
TAATTTTGCCTGTGGCCATCCTACATGCTGCTGCATTTGCACTTGGTTATTGGGTTTCAA
AAATATCATTTGGGGAATCCACTTCACGTACCATTTCCATCGAATGTGGGATGCAGAGTT
CTGCGCTTGGATTTCTACTTGCCCAGAAACATTTCACAAATCCTCTTGTGGCCGTTCCTT
CTGCTGTAAGCGTAGTCTGCATGGCGCTTGGTGGCAGTGCTCTTGCCGTCTTCTGGAGGA
ACCAGCCAATTCCTGTCGATGACAAAGATGACTTTAAAGAATGAATGTTTTACCCCTTCT
TTTCTTTTGTCAATTGTCTTCTCAGAGCTGCTGTTAGTTCCTGGTTTAGCTTAGTATCTC
AGTTTGCTCTACATCAACTAGAATTTGCCATCCCCTTATCTTTTGAGTTAAGTTTCAGGG
AACTAAACAAAACAAAAAAAAAAAAACAGGCAGTTGTGTAGTATTAGGGTCATAAATATT
AGAACTGAAAATGTTACTCTTGAATTTCTCAGTTTTTTAATTGAAAGGAAAAGAATAAAA
GGACTGATGAGTAATAAACCCAA