Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_11s0016g01240.t01
CDS Infomation

cds chromosome:12X:11:982736:996700:1 gene:VIT_11s0016g01240 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGCAGACAACAGATGTTGCAAGAGCTGTTGCTGCTGCAGCAGCTGCTGCCACTGCTGCT
CCTTCACCACGACCATCTGTTGTATTTTCATCAAAAGATGACAATAGTCAACTTCAGAAA
CTACAGAACCAACTTACAAGACTACTAAAGGGCTTCTCACATACTCCTGAAGTGAAAGGT
GTAAATTACAATCCAGAAATCTTGACCAGTCAAAAACGCCAATGGGCAAGCTTTCAGTTG
CAGTCATTGGATCATAGGTCTTTGAAAGAGCCATCGAGGCTTTTTGAGAGCATGGTAGTT
GTTGGACTTCATCCTAACTGTGATATCCATGCACTTCAAAGACAGTTCTTTGCAAGAAAG
AATGAAGGTTCAGGGAAATTCCGGAATGCACTGAGTGGTCAGCATCAATCTCGTGTGGAA
CCTAACATTGAACCTCAGGTCTTATTTGTTTACCCACCAGAAAAACAGCTACCTCTTAAA
TATAAGGACCTTCTTTCGTTCTGCTTTCCTGGAGGCGTGGAGGTTCATGCTATCGAGAGA
ACTCCTTCCATGAGTGAGTTGAACGAAATACTTATTGGACAGGAACACCTTAAACAAAGT
GACCTGTCCTTTGTATTCCGGTTGCAGGTTGCTGACGATTCAACTCTGTACGGATGCTGC
GTGTTAGTCGAAGAATTAGTGCAAAAATCATCTGGATTGATTTCCATGATTTCTGATAAA
CAACCTTTTTGCTCATCTTTGAGCCGTCACACATTAACCACACGGCGATGTTATTGCATT
CTTTCAAGGCTTCCATTCTTTGAGTTACATTTTGGTGTTTTGAATAGCATCTTGACCGAA
GAAAGGTTGGAACGCTTAACAAAAGGAATTGCTGCTTTAGATATGGAATCACAAGGGCAT
TACAGTAATGAAGAAGATTTAGAAGAAAAATCAGATAATCTTTTAACTCAGCATAAAGAC
GCGGAGGATATGCTGAGTGGAATCACTGAGATTTGCCCATTAAGTTCGAGAGATTCTACC
CTTGGAAGAGTCAGTGATGATGGTAATCACTTGCAGCATCAAATAATTGAGGGGAAATTT
TCCTTGGTGAATAAAGATTTAAATGATAATGCTGTTGCTCAAGTTGATCTTGAATCAGAA
AATCCTACAGCTAAAACAGACCCCAGAGATGCAATAAAGGTCCCTGAAGTTTGTGATACA
TGTTCTGATGATCTCATGACAAACAAGCAAACAGTAGAAAGGCGTTTACCTAGTGCTGTT
TTGCCACTTCTACGCTATCAGTATGAAAGCTCTGAATCTTCCTCTAGTTTCCAGGGTTCT
CCAAGTGAAGACAGGAATTTTAGGAGTGACATTGATGAAACAGAGACAGAAGAGGCATCT
TTCTCTGGGCAGGATGATTCCAGTGACCACAGTGACATTCTTGAATGGGCTAAGGCAAGC
AACAAGGGATCCTTACAAATAATATGCGAGTATTACCGGCTACATTGCCCTGCTAGGGGT
TCAACAACTACATTCCACCCTTTGGAACATCTTCATCCCTTGGAATTTCATAGACCTGAT
GAAACAGTTTTACACATTGCTGGTTCTACAATTGATTTGAGATCATGCAGCACAAGTTTG
GAACTGGCTGAGGCACACAGTGCACTTTTGGTGGAGGAGGAAGCAACTGCTTTCTCTGTA
TGGGCTGTTGCTTGTATATGTGGTTCATTACGACTTGAGAATGTGTTGACATTGTTTGCA
GGAGCATTGCTGGAGAAGCAAATTGTATTTGTTTGTTCTAATCTGGGAATATTGTCTGCT
TCAGTTTTGTCAATTGTTCCTCTTATTCGTCCCTATCAGTGGCAGAGCTGGCTAATGCCC
GTTTTACCAAATGACATGCTGGACTTTTTGGATGCACCTGTCCCTTACATAGTTGGTGTT
AAGAACAAAACCAGTGAAGTACAGTCAAAGTTAACAAATGTTATCCTGGTCGATGTGTAC
AAGAACCAGGTGAAGTCATCAACAATACCACAGCTGCCTAAGCATAAGGAGTTGTTTTCA
TCTTTAAGTCCTTATCATGCAAAGCTTGTGGGAGAAAGTTATTTGGGGAGGAAAAGACCG
GTTTATGAATGTACAGATGTGCAGATTGAGGCTGCCAAGGGTTTCCTAGGAGTATTAAGA
TCTTACCTGGACACTCTTTGCTCCAACCTGCGCTCTCATACAATTACAAATGTTCAATCC
AATGATGATAAGGTATCATTGCTTTTGAAGGAGAGTTTCATCGACTCATTCCCTAGTCGA
GATCGTCCATTTATGAAGCATTTTGTGGACACACAACTCTTCTCAGTACATACAGATCTT
GTTCTCTCTTTCTTCCAGAAGGAATAG

Peptide Sequence

PEP ID

VIT_11s0016g01240.t01
PEP Infomation

pep chromosome:12X:11:982736:996700:1 gene:VIT_11s0016g01240 transcript:VIT_11s0016g01240.t01 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MQTTDVARAVAAAAAAATAAPSPRPSVVFSSKDDNSQLQKLQNQLTRLLKGFSHTPEVKG
VNYNPEILTSQKRQWASFQLQSLDHRSLKEPSRLFESMVVVGLHPNCDIHALQRQFFARK
NEGSGKFRNALSGQHQSRVEPNIEPQVLFVYPPEKQLPLKYKDLLSFCFPGGVEVHAIER
TPSMSELNEILIGQEHLKQSDLSFVFRLQVADDSTLYGCCVLVEELVQKSSGLISMISDK
QPFCSSLSRHTLTTRRCYCILSRLPFFELHFGVLNSILTEERLERLTKGIAALDMESQGH
YSNEEDLEEKSDNLLTQHKDAEDMLSGITEICPLSSRDSTLGRVSDDGNHLQHQIIEGKF
SLVNKDLNDNAVAQVDLESENPTAKTDPRDAIKVPEVCDTCSDDLMTNKQTVERRLPSAV
LPLLRYQYESSESSSSFQGSPSEDRNFRSDIDETETEEASFSGQDDSSDHSDILEWAKAS
NKGSLQIICEYYRLHCPARGSTTTFHPLEHLHPLEFHRPDETVLHIAGSTIDLRSCSTSL
ELAEAHSALLVEEEATAFSVWAVACICGSLRLENVLTLFAGALLEKQIVFVCSNLGILSA
SVLSIVPLIRPYQWQSWLMPVLPNDMLDFLDAPVPYIVGVKNKTSEVQSKLTNVILVDVY
KNQVKSSTIPQLPKHKELFSSLSPYHAKLVGESYLGRKRPVYECTDVQIEAAKGFLGVLR
SYLDTLCSNLRSHTITNVQSNDDKVSLLLKESFIDSFPSRDRPFMKHFVDTQLFSVHTDL
VLSFFQKE

Transcript Sequence

Transcript ID

VIT_11s0016g01240.t01
Transcript Infomation

cdna chromosome:12X:11:982736:996700:1 gene:VIT_11s0016g01240 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

AGAATTATAAATAATGGCAAAGAATGAAGACAAAGGTAGCCCTGGATGGAGTGCTTCATT
CTTCATGCAGACAACAGATGTTGCAAGAGCTGTTGCTGCTGCAGCAGCTGCTGCCACTGC
TGCTCCTTCACCACGACCATCTGTTGTATTTTCATCAAAAGATGACAATAGTCAACTTCA
GAAACTACAGAACCAACTTACAAGACTACTAAAGGGCTTCTCACATACTCCTGAAGTGAA
AGGTGTAAATTACAATCCAGAAATCTTGACCAGTCAAAAACGCCAATGGGCAAGCTTTCA
GTTGCAGTCATTGGATCATAGGTCTTTGAAAGAGCCATCGAGGCTTTTTGAGAGCATGGT
AGTTGTTGGACTTCATCCTAACTGTGATATCCATGCACTTCAAAGACAGTTCTTTGCAAG
AAAGAATGAAGGTTCAGGGAAATTCCGGAATGCACTGAGTGGTCAGCATCAATCTCGTGT
GGAACCTAACATTGAACCTCAGGTCTTATTTGTTTACCCACCAGAAAAACAGCTACCTCT
TAAATATAAGGACCTTCTTTCGTTCTGCTTTCCTGGAGGCGTGGAGGTTCATGCTATCGA
GAGAACTCCTTCCATGAGTGAGTTGAACGAAATACTTATTGGACAGGAACACCTTAAACA
AAGTGACCTGTCCTTTGTATTCCGGTTGCAGGTTGCTGACGATTCAACTCTGTACGGATG
CTGCGTGTTAGTCGAAGAATTAGTGCAAAAATCATCTGGATTGATTTCCATGATTTCTGA
TAAACAACCTTTTTGCTCATCTTTGAGCCGTCACACATTAACCACACGGCGATGTTATTG
CATTCTTTCAAGGCTTCCATTCTTTGAGTTACATTTTGGTGTTTTGAATAGCATCTTGAC
CGAAGAAAGGTTGGAACGCTTAACAAAAGGAATTGCTGCTTTAGATATGGAATCACAAGG
GCATTACAGTAATGAAGAAGATTTAGAAGAAAAATCAGATAATCTTTTAACTCAGCATAA
AGACGCGGAGGATATGCTGAGTGGAATCACTGAGATTTGCCCATTAAGTTCGAGAGATTC
TACCCTTGGAAGAGTCAGTGATGATGGTAATCACTTGCAGCATCAAATAATTGAGGGGAA
ATTTTCCTTGGTGAATAAAGATTTAAATGATAATGCTGTTGCTCAAGTTGATCTTGAATC
AGAAAATCCTACAGCTAAAACAGACCCCAGAGATGCAATAAAGGTCCCTGAAGTTTGTGA
TACATGTTCTGATGATCTCATGACAAACAAGCAAACAGTAGAAAGGCGTTTACCTAGTGC
TGTTTTGCCACTTCTACGCTATCAGTATGAAAGCTCTGAATCTTCCTCTAGTTTCCAGGG
TTCTCCAAGTGAAGACAGGAATTTTAGGAGTGACATTGATGAAACAGAGACAGAAGAGGC
ATCTTTCTCTGGGCAGGATGATTCCAGTGACCACAGTGACATTCTTGAATGGGCTAAGGC
AAGCAACAAGGGATCCTTACAAATAATATGCGAGTATTACCGGCTACATTGCCCTGCTAG
GGGTTCAACAACTACATTCCACCCTTTGGAACATCTTCATCCCTTGGAATTTCATAGACC
TGATGAAACAGTTTTACACATTGCTGGTTCTACAATTGATTTGAGATCATGCAGCACAAG
TTTGGAACTGGCTGAGGCACACAGTGCACTTTTGGTGGAGGAGGAAGCAACTGCTTTCTC
TGTATGGGCTGTTGCTTGTATATGTGGTTCATTACGACTTGAGAATGTGTTGACATTGTT
TGCAGGAGCATTGCTGGAGAAGCAAATTGTATTTGTTTGTTCTAATCTGGGAATATTGTC
TGCTTCAGTTTTGTCAATTGTTCCTCTTATTCGTCCCTATCAGTGGCAGAGCTGGCTAAT
GCCCGTTTTACCAAATGACATGCTGGACTTTTTGGATGCACCTGTCCCTTACATAGTTGG
TGTTAAGAACAAAACCAGTGAAGTACAGTCAAAGTTAACAAATGTTATCCTGGTCGATGT
GTACAAGAACCAGGTGAAGTCATCAACAATACCACAGCTGCCTAAGCATAAGGAGTTGTT
TTCATCTTTAAGTCCTTATCATGCAAAGCTTGTGGGAGAAAGTTATTTGGGGAGGAAAAG
ACCGGTTTATGAATGTACAGATGTGCAGATTGAGGCTGCCAAGGGTTTCCTAGGAGTATT
AAGATCTTACCTGGACACTCTTTGCTCCAACCTGCGCTCTCATACAATTACAAATGTTCA
ATCCAATGATGATAAGGTATCATTGCTTTTGAAGGAGAGTTTCATCGACTCATTCCCTAG
TCGAGATCGTCCATTTATGAAGCATTTTGTGGACACACAACTCTTCTCAGTACATACAGA
TCTTGTTCTCTCTTTCTTCCAGAAGGAATAGGGCTGCCATGCTGGCTTGGAAATGTATCA
TTCCTTTGTACCTTTAATGGAAGTTCTATAATGTATAATTTTTTATTTATATAATATAAA
TTTTCTTGGTGTGGTA