Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_11s0016g00390.t01
CDS Infomation

cds chromosome:12X:11:404959:407256:-1 gene:VIT_11s0016g00390 gene_biotype:protein_coding transcript_biotype:protein_coding description:RBR-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:D7TC90]
Sequence

ATGGAGGCGATGAAGCTGGAGAGACCTGTAGTTGAGATAGTGGATATGGAGGAAGAAGAT
GCTGAAGAACAAGTGTCGTTGTTTTTGACACCCATATCTTGCAGGGGAGGCACCAGGAAC
ACTGCAATCTCCGTCGAGCAATACTCTGCTGACAAAGAACTCTATCTCTCCATCAAAGCT
TCTCTCCTTCAACCCCAAACCCCTCTCATCCACCTCGACAACGACGATGATGATGATGAT
CTGCAAATTCTGGGCATAAACCCCCCCACAACCCCACATGCATTCTCCACGAGAAAACCC
TTTACTTTTCCTTCTGTTACTGAAACAGGGCAGCCCTCCAATTCCAAACCAGACCCTCCT
CCAACCTTCGTTTGTGAAATCTGCATTGACCCCAAACCCCTAAACCACTCCTTCAGCATC
AAGGGCTGCCCCCACTCTTACTGCTCCGACTGCATGACCAAATACGTGGCCTCTAAACTT
CAAGACAACGTTTCCCGGATTTCTTGCCCCGCACCCAACTGCACCGGAGTGCTAGAGCCC
CAGCAGTGTCGTCCCATCCTCCCATCCCATGTGTTTGATCGCTGGGGAAATGCTTTATGC
GAGGCTCTCATTCTTGGGTCTCAAAAATTCTACTGTCCTTACAAGGATTGTTCTGCTCTG
TTAATCAGAGATGAAGGAGAGGTCATTAAAGAGTCTGAGTGCCCCAATTGTAGGAGGCTC
TTCTGCGCCCAGTGTGAGGTTCCTTGGCATTCTGGGATTGATTGTGGGGAGTTTCAGAAA
TTGAACAAGGATGAAAGAGGGAGAGAGGACATTTTGATGATGAATCTTGCCAAGACCAAT
AACTGGAAGAGGTGCCCCAAGTGCAAGTTCTACGTTGAGAAATCATTTGGTTGCATGTAT
ATCAGGTGCAGGTGTGGATTTGCTTTCTGTTACAACTGTGGAGCTCCCTCATCTACCATC
TCCCATATATGTCCCCATTGTCGGCATTAA

Peptide Sequence

PEP ID

VIT_11s0016g00390.t01
PEP Infomation

pep chromosome:12X:11:404959:407256:-1 gene:VIT_11s0016g00390 transcript:VIT_11s0016g00390.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:RBR-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:D7TC90]
Sequence

MEAMKLERPVVEIVDMEEEDAEEQVSLFLTPISCRGGTRNTAISVEQYSADKELYLSIKA
SLLQPQTPLIHLDNDDDDDDLQILGINPPTTPHAFSTRKPFTFPSVTETGQPSNSKPDPP
PTFVCEICIDPKPLNHSFSIKGCPHSYCSDCMTKYVASKLQDNVSRISCPAPNCTGVLEP
QQCRPILPSHVFDRWGNALCEALILGSQKFYCPYKDCSALLIRDEGEVIKESECPNCRRL
FCAQCEVPWHSGIDCGEFQKLNKDERGREDILMMNLAKTNNWKRCPKCKFYVEKSFGCMY
IRCRCGFAFCYNCGAPSSTISHICPHCRH

Transcript Sequence

Transcript ID

VIT_11s0016g00390.t01
Transcript Infomation

cdna chromosome:12X:11:404959:407256:-1 gene:VIT_11s0016g00390 gene_biotype:protein_coding transcript_biotype:protein_coding description:RBR-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:D7TC90]
Sequence

ATGGAGGCGATGAAGCTGGAGAGACCTGTAGTTGAGATAGTGGATATGGAGGAAGAAGAT
GCTGAAGAACAAGTGTCGTTGTTTTTGACACCCATATCTTGCAGGGGAGGCACCAGGAAC
ACTGCAATCTCCGTCGAGCAATACTCTGCTGACAAAGAACTCTATCTCTCCATCAAAGCT
TCTCTCCTTCAACCCCAAACCCCTCTCATCCACCTCGACAACGACGATGATGATGATGAT
CTGCAAATTCTGGGCATAAACCCCCCCACAACCCCACATGCATTCTCCACGAGAAAACCC
TTTACTTTTCCTTCTGTTACTGAAACAGGGCAGCCCTCCAATTCCAAACCAGACCCTCCT
CCAACCTTCGTTTGTGAAATCTGCATTGACCCCAAACCCCTAAACCACTCCTTCAGCATC
AAGGGCTGCCCCCACTCTTACTGCTCCGACTGCATGACCAAATACGTGGCCTCTAAACTT
CAAGACAACGTTTCCCGGATTTCTTGCCCCGCACCCAACTGCACCGGAGTGCTAGAGCCC
CAGCAGTGTCGTCCCATCCTCCCATCCCATGTGTTTGATCGCTGGGGAAATGCTTTATGC
GAGGCTCTCATTCTTGGGTCTCAAAAATTCTACTGTCCTTACAAGGATTGTTCTGCTCTG
TTAATCAGAGATGAAGGAGAGGTCATTAAAGAGTCTGAGTGCCCCAATTGTAGGAGGCTC
TTCTGCGCCCAGTGTGAGGTTCCTTGGCATTCTGGGATTGATTGTGGGGAGTTTCAGAAA
TTGAACAAGGATGAAAGAGGGAGAGAGGACATTTTGATGATGAATCTTGCCAAGACCAAT
AACTGGAAGAGGTGCCCCAAGTGCAAGTTCTACGTTGAGAAATCATTTGGTTGCATGTAT
ATCAGGTGCAGGTGTGGATTTGCTTTCTGTTACAACTGTGGAGCTCCCTCATCTACCATC
TCCCATATATGTCCCCATTGTCGGCATTAA