Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_11s0016g00340.t01
CDS Infomation

cds chromosome:12X:11:343136:347907:1 gene:VIT_11s0016g00340 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA repair protein RAD51 homolog [Source:UniProtKB/TrEMBL;Acc:D7TC85]
Sequence

ATGGAGCAGCAGAAGATGGCTCAAGCACACGAGGAAGTGGAAGACATGCAGCATGGTCCT
TTCCCTGTTGAACATCTGCAGGCATCGGGCATTGCATCCCTTGACATAAAGAAGCTTAAA
GATGCGGGTCTCTGCACCGTAGAATCTGTTGCATACTCTCCAAGGAAAGATCTTCTGCAA
ATCAAAGGAATTAGTGAAGCTAAAGTTGACAAGATTGTTGAAGCAGCTTCCAAACTAGTC
CCACTGGGTTTTACTAGTGCTAGCCAACTCCACGCCCAAAGGCTTGAGATCATTCAGATA
ACATCTGGATCAAGAGAACTTGACAAGATATTGGAAGGGGGACTTGAGACTGGATCTATA
ACTGAGATATATGGAGAGTTCCGCTCTGGAAAGACTCAGCTCTGCCACACACTCTGTGTC
ACTTGCCAACTACCATTAGATCAAGGAGGTGGTGAGGGAAAAGCAATGTACATTGATGCT
GAGGGCACATTCAGACCACAGAGACTTTTACAAATAGCAGACAGGTTCGGACTGAATGGT
GCTGATGTTTTGGAAAATGTGGCTTATGCTAGAGCATATAACACTGATCATCAGTCGAGG
CTTTTGCTAGAAGCAGCATCAATGATGGTGGAAACAAGGTTTGCTCTTATGATAGTAGAC
AGCGCTACTGCTCTCTATAGAACAGATTTTTCTGGAAGGGGAGAATTGTCAGCTAGGCAA
ATGCATCTTGCTAAGTTCCTAAGGAGCCTTCAGAAATTAGCAGATGAGTTCGGTGTAGCT
GTTGTTATCACAAATCAAGTTGTTGCTCAAGTGGATGGTTCTGCCATCTTTGCTGGACCT
CAAATCAAACCTATTGGTGGTAACATTATGGCTCATGCTTCCACAACAAGGCTCGCTCTT
CGGAAGGGAAGAGGGGAGGAGCGCATCTGTAAAGTAATAAGTTCTCCTTGTTTAGCTGAA
GCTGATGCCCGGTTTCAGATTTCTGCAGAAGGTGTTACTGATGTGAAGGACTGA

Peptide Sequence

PEP ID

VIT_11s0016g00340.t01
PEP Infomation

pep chromosome:12X:11:343136:347907:1 gene:VIT_11s0016g00340 transcript:VIT_11s0016g00340.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA repair protein RAD51 homolog [Source:UniProtKB/TrEMBL;Acc:D7TC85]
Sequence

MEQQKMAQAHEEVEDMQHGPFPVEHLQASGIASLDIKKLKDAGLCTVESVAYSPRKDLLQ
IKGISEAKVDKIVEAASKLVPLGFTSASQLHAQRLEIIQITSGSRELDKILEGGLETGSI
TEIYGEFRSGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDAEGTFRPQRLLQIADRFGLNG
ADVLENVAYARAYNTDHQSRLLLEAASMMVETRFALMIVDSATALYRTDFSGRGELSARQ
MHLAKFLRSLQKLADEFGVAVVITNQVVAQVDGSAIFAGPQIKPIGGNIMAHASTTRLAL
RKGRGEERICKVISSPCLAEADARFQISAEGVTDVKD

Transcript Sequence

Transcript ID

VIT_11s0016g00340.t01
Transcript Infomation

cdna chromosome:12X:11:343136:347907:1 gene:VIT_11s0016g00340 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA repair protein RAD51 homolog [Source:UniProtKB/TrEMBL;Acc:D7TC85]
Sequence

TCAGCAGCAGCAACCATGGAGCAGCAGAAGATGGCTCAAGCACACGAGGAAGTGGAAGAC
ATGCAGCATGGTCCTTTCCCTGTTGAACATCTGCAGGCATCGGGCATTGCATCCCTTGAC
ATAAAGAAGCTTAAAGATGCGGGTCTCTGCACCGTAGAATCTGTTGCATACTCTCCAAGG
AAAGATCTTCTGCAAATCAAAGGAATTAGTGAAGCTAAAGTTGACAAGATTGTTGAAGCA
GCTTCCAAACTAGTCCCACTGGGTTTTACTAGTGCTAGCCAACTCCACGCCCAAAGGCTT
GAGATCATTCAGATAACATCTGGATCAAGAGAACTTGACAAGATATTGGAAGGGGGACTT
GAGACTGGATCTATAACTGAGATATATGGAGAGTTCCGCTCTGGAAAGACTCAGCTCTGC
CACACACTCTGTGTCACTTGCCAACTACCATTAGATCAAGGAGGTGGTGAGGGAAAAGCA
ATGTACATTGATGCTGAGGGCACATTCAGACCACAGAGACTTTTACAAATAGCAGACAGG
TTCGGACTGAATGGTGCTGATGTTTTGGAAAATGTGGCTTATGCTAGAGCATATAACACT
GATCATCAGTCGAGGCTTTTGCTAGAAGCAGCATCAATGATGGTGGAAACAAGGTTTGCT
CTTATGATAGTAGACAGCGCTACTGCTCTCTATAGAACAGATTTTTCTGGAAGGGGAGAA
TTGTCAGCTAGGCAAATGCATCTTGCTAAGTTCCTAAGGAGCCTTCAGAAATTAGCAGAT
GAGTTCGGTGTAGCTGTTGTTATCACAAATCAAGTTGTTGCTCAAGTGGATGGTTCTGCC
ATCTTTGCTGGACCTCAAATCAAACCTATTGGTGGTAACATTATGGCTCATGCTTCCACA
ACAAGGCTCGCTCTTCGGAAGGGAAGAGGGGAGGAGCGCATCTGTAAAGTAATAAGTTCT
CCTTGTTTAGCTGAAGCTGATGCCCGGTTTCAGATTTCTGCAGAAGGTGTTACTGATGTG
AAGGACTGACCCATTCTGGACCCCTTGTTTTGAGCTTTTTCATCTGTCTGTATTATAGGT
GTAGCTCTTTCAAGCAAGTCATATGTTTCAACTTGTAATTTTGAAAAGCTGTTCTAAAAG
CTCATGATTGGTCACATTCTT