Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_10s0003g01000.t01
CDS Infomation

cds chromosome:12X:10:2369419:2374322:1 gene:VIT_10s0003g01000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:F6HM78]
Sequence

ATGAAGGCTTCGTTGTTCAGATCTGCAGAAGCTGCTCTAAGGAGGGTCTCATCCCCCTCC
GCATCTTCGCATCTACTCCGCCGATCTTACTGCGTGGAATCCAAGCCAGAACGCAAGGTC
GCCGTTCTTGGAGCCGCCGGCGGCATTGGACAGCCCCTTGCCCTCCTCATGAAGCTCAAT
CCTCTTGTCTCCTCGCTCTCTCTCTACGATATCGCTGGTACTCCTGGCGTGGCCGCTGAT
GTCAGCCACATCAACACTCGTTCCCAAGTCGCGGGGTACATGGGCGACGATCAGCTAGGG
CAAGCCTTGGAGGGAGCAGATTTGGTGATTATTCCAGCCGGTGTTCCAAGAAAGCCTGGT
ATGACTCGTGACGATCTGTTCAACATCAATGCCGGAATTGTGAAGTCCTTATGCACTGCC
ATTGCCAAGTACTGTCCCAATGCATTGGTTAATATGATAAGCAACCCTGTGAACTCGACT
GTGCCAATTGCTGCTGAGGTTTTCAAGAAGGCTGGAACTTATGATGAGAAGAAGCTGTTT
GGTGTGACTACACTAGATGTGGTTAGGGCTAAGACCTTCTATGCTGGGAAGGCCAAGGTC
CCAGTTGCTGAGGCCAATGTACCAGTTGTTGGTGGTCACGCAGGCATAACGATCCTTCCA
CTCTTTTCTCAAGCCACACCGAAATCCAACAATTTGTCAGATGAAGATATTGTGGCTCTA
ACAAAACGAACACAAGATGGAGGGACAGAGGTTGTGGAAGCCAAGGCTGGAAAAGGATCT
GCAACCCTCTCAATGGCATATGCTGGAGCAGTCTTTGCAGATGCTTGCTTGAAGGGTCTT
AATGGCGTTCCAGATGTAGTTGAATGCTCTTTTGTTCAATCAACCATTGTTCCTGATTTG
CCTTACTTTGCCTCTAAGGTAAAGCTTGGAAAGAATGGTGTGGAAGAGGTCCTTGGGTTG
GGTCCTTTGTCGGACTATGAGAAACAAGGTCTTGAAAGCCTCAAACATGAGCTCAAAGCC
TCAATTGAGAAGGGAATCAAATTTGCCACTCAAAGTTAA

Peptide Sequence

PEP ID

VIT_10s0003g01000.t01
PEP Infomation

pep chromosome:12X:10:2369419:2374322:1 gene:VIT_10s0003g01000 transcript:VIT_10s0003g01000.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:F6HM78]
Sequence

MKASLFRSAEAALRRVSSPSASSHLLRRSYCVESKPERKVAVLGAAGGIGQPLALLMKLN
PLVSSLSLYDIAGTPGVAADVSHINTRSQVAGYMGDDQLGQALEGADLVIIPAGVPRKPG
MTRDDLFNINAGIVKSLCTAIAKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLF
GVTTLDVVRAKTFYAGKAKVPVAEANVPVVGGHAGITILPLFSQATPKSNNLSDEDIVAL
TKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACLKGLNGVPDVVECSFVQSTIVPDL
PYFASKVKLGKNGVEEVLGLGPLSDYEKQGLESLKHELKASIEKGIKFATQS

Transcript Sequence

Transcript ID

VIT_10s0003g01000.t01
Transcript Infomation

cdna chromosome:12X:10:2369419:2374322:1 gene:VIT_10s0003g01000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:F6HM78]
Sequence

TCTCTCTAAGTCTATATATTTTCAGGGAGTGAGGGAGCCGATTTCGGAGTCTTCTCAATT
TCTGTTTGTTTCTTCTCTCTGTAGCTGAAAATGAAGGCTTCGTTGTTCAGATCTGCAGAA
GCTGCTCTAAGGAGGGTCTCATCCCCCTCCGCATCTTCGCATCTACTCCGCCGATCTTAC
TGCGTGGAATCCAAGCCAGAACGCAAGGTCGCCGTTCTTGGAGCCGCCGGCGGCATTGGA
CAGCCCCTTGCCCTCCTCATGAAGCTCAATCCTCTTGTCTCCTCGCTCTCTCTCTACGAT
ATCGCTGGTACTCCTGGCGTGGCCGCTGATGTCAGCCACATCAACACTCGTTCCCAAGTC
GCGGGGTACATGGGCGACGATCAGCTAGGGCAAGCCTTGGAGGGAGCAGATTTGGTGATT
ATTCCAGCCGGTGTTCCAAGAAAGCCTGGTATGACTCGTGACGATCTGTTCAACATCAAT
GCCGGAATTGTGAAGTCCTTATGCACTGCCATTGCCAAGTACTGTCCCAATGCATTGGTT
AATATGATAAGCAACCCTGTGAACTCGACTGTGCCAATTGCTGCTGAGGTTTTCAAGAAG
GCTGGAACTTATGATGAGAAGAAGCTGTTTGGTGTGACTACACTAGATGTGGTTAGGGCT
AAGACCTTCTATGCTGGGAAGGCCAAGGTCCCAGTTGCTGAGGCCAATGTACCAGTTGTT
GGTGGTCACGCAGGCATAACGATCCTTCCACTCTTTTCTCAAGCCACACCGAAATCCAAC
AATTTGTCAGATGAAGATATTGTGGCTCTAACAAAACGAACACAAGATGGAGGGACAGAG
GTTGTGGAAGCCAAGGCTGGAAAAGGATCTGCAACCCTCTCAATGGCATATGCTGGAGCA
GTCTTTGCAGATGCTTGCTTGAAGGGTCTTAATGGCGTTCCAGATGTAGTTGAATGCTCT
TTTGTTCAATCAACCATTGTTCCTGATTTGCCTTACTTTGCCTCTAAGGTAAAGCTTGGA
AAGAATGGTGTGGAAGAGGTCCTTGGGTTGGGTCCTTTGTCGGACTATGAGAAACAAGGT
CTTGAAAGCCTCAAACATGAGCTCAAAGCCTCAATTGAGAAGGGAATCAAATTTGCCACT
CAAAGTTAAGTGTTTGAATTGTACAAGGCTTGTGGGTGCCATTATCACAAGCATTTATTT
CAGAATTCATCACAGTTTTGTTTGTCACTATTTATGTGTACTTGGGGGAACCATTTGCCT
GTTGTAGCTACGGGACCAGCTAAATCTGCTGAGGACTAAGCTTTATTGACTCGAGAGCAC
AATAATAAGTTTTAGCGGCCATCTTTATTGTGTTCTTGTAATAAAAGTTCATTGCATACT
GGATCAACATGATCCTTCA