Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_09s0002g05260.t01
CDS Infomation

cds chromosome:12X:9:4959059:4964103:1 gene:VIT_09s0002g05260 gene_biotype:protein_coding transcript_biotype:protein_coding description:Katanin p60 ATPase-containing subunit A1 [Source:UniProtKB/TrEMBL;Acc:D7U0Q4]
Sequence

ATGGTGGGACCGTCGACGCTGGTGGGGTTACAAGATCACCTGAAATTGGCGAGGGAGTAC
GCTCTTGAAGGCCTCTACGACACCTCCATTATCTTCTTTGATGGTGCCATTGCTCAGATC
AACAAGCACTTAAACACACTTGATGACCCTTTGATTCGCACAAAATGGATGAATGTCAAG
AAAGCTCTTTCAGAGGAAACAGAGGTTGTGAAGCAGTTGGATGCAGAAAGAAGGGCCTTC
AAGGAAATTCCTGGGGGACGGCGCCCTTCATCACCTCCAATCTCAACTAAATCATCTTTT
GTTTTTCAACCACTGGATGAGTACCCAACTTCATCTGGTGCTCCCATGGATGATCCTGAT
GTATGGAGGCCACCTAGTCGGGACACTACGAGTAGAAGATCTGCAAGATCTGGTCAGGTG
GGCATGAGAAAGACTTCACAAGATGGAACATGGCCTCGTGGTTCTACAAGGGGAGGAGCA
GCTCCGCGTGGAGGAAAGTCTGGTGCTTCAAGTAGAACTCACTCAGGTGTCCGAGCATCG
ACAACTGGAAGGAAGGGCTCTAGCAAATCTAACACTGACAAGGCTGATTCAGCGAATGGT
GATGCTGAAGATGGAAAATCAAAGAGGGCACAGTATGAGGGACCTGATCCAGACTTGGCT
GCAATGCTTGAAAGGGATGTTTTGGAGACTAGCCCTGGAGTGAGATGGGATGATGTTGCA
GGATTGAGTGAAGCCAAAAGACTCCTAGAGGAAGCTGTTGTCCTTCCTTTATGGATGCCT
GAATATTTCCAGGGAATTAGGAGACCATGGAAAGGTGTTCTTATGTTTGGTCCTCCTGGT
ACTGGCAAGACACTTTTGGCTAAAGCTGTTGCTACTGAGTGTGGTACAACATTCTTCAAT
GTTTCTTCTGCTACCTTAGCCTCAAAATGGCGTGGGGAGAGTGAGCGCATGGTCCGTTGC
TTATTTGATCTTGCAAGAGCTTATGCTCCAAGTACTATTTTTATTGACGAGATTGATTCT
CTTTGCAATGCTCGGGGGGCTTCAGGGGAGCATGAATCTTCCAGACGGGTGAAGTCTGAA
CTTCTGGTTCAGGTTGATGGTGTAAACAACAGTTCTACAGGTGAAGATGGTAGTCGAAAA
ATAGTGATGGTTCTGGCAGCTACAAATTTTCCATGGGATATAGATGAAGCACTCAGGAGG
AGGCTGGAAAAGCGTATATACATCCCTCTCCCAAATTTTGAGAGTCGCAAGGAGCTTATA
CGGATCAATTTGAAAACTGTGGAGGTGGCTCCTGATGTAAATATCGACGAAGTGGCTCGC
CGCACTGAGGGGTACAGTGGAGATGATCTGACAAATGTTTGCCGGGATGCTTCCTTAAAT
GGCATGAGACGGAAAATAGCAGGTAAGACACGAGATGAGATTAAGAACATGCCCAAGGAC
GAGATTTCAAATGATCCTGTCGCTATGTGTGACTTTGAAGAAGCAATAACCAAGGTTCAA
CGGAGTGTTTCTCAGGCTGATATTGAGCGCCATGAGAAGTGGTTTTCCGAATTCGGATCT
GCATAG

Peptide Sequence

PEP ID

VIT_09s0002g05260.t01
PEP Infomation

pep chromosome:12X:9:4959059:4964103:1 gene:VIT_09s0002g05260 transcript:VIT_09s0002g05260.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Katanin p60 ATPase-containing subunit A1 [Source:UniProtKB/TrEMBL;Acc:D7U0Q4]
Sequence

MVGPSTLVGLQDHLKLAREYALEGLYDTSIIFFDGAIAQINKHLNTLDDPLIRTKWMNVK
KALSEETEVVKQLDAERRAFKEIPGGRRPSSPPISTKSSFVFQPLDEYPTSSGAPMDDPD
VWRPPSRDTTSRRSARSGQVGMRKTSQDGTWPRGSTRGGAAPRGGKSGASSRTHSGVRAS
TTGRKGSSKSNTDKADSANGDAEDGKSKRAQYEGPDPDLAAMLERDVLETSPGVRWDDVA
GLSEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFN
VSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSE
LLVQVDGVNNSSTGEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELI
RINLKTVEVAPDVNIDEVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMPKD
EISNDPVAMCDFEEAITKVQRSVSQADIERHEKWFSEFGSA

Transcript Sequence

Transcript ID

VIT_09s0002g05260.t01
Transcript Infomation

cdna chromosome:12X:9:4959059:4964103:1 gene:VIT_09s0002g05260 gene_biotype:protein_coding transcript_biotype:protein_coding description:Katanin p60 ATPase-containing subunit A1 [Source:UniProtKB/TrEMBL;Acc:D7U0Q4]
Sequence

GATAATGGTGGGACCGTCGACGCTGGTGGGGTTACAAGATCACCTGAAATTGGCGAGGGA
GTACGCTCTTGAAGGCCTCTACGACACCTCCATTATCTTCTTTGATGGTGCCATTGCTCA
GATCAACAAGCACTTAAACACACTTGATGACCCTTTGATTCGCACAAAATGGATGAATGT
CAAGAAAGCTCTTTCAGAGGAAACAGAGGTTGTGAAGCAGTTGGATGCAGAAAGAAGGGC
CTTCAAGGAAATTCCTGGGGGACGGCGCCCTTCATCACCTCCAATCTCAACTAAATCATC
TTTTGTTTTTCAACCACTGGATGAGTACCCAACTTCATCTGGTGCTCCCATGGATGATCC
TGATGTATGGAGGCCACCTAGTCGGGACACTACGAGTAGAAGATCTGCAAGATCTGGTCA
GGTGGGCATGAGAAAGACTTCACAAGATGGAACATGGCCTCGTGGTTCTACAAGGGGAGG
AGCAGCTCCGCGTGGAGGAAAGTCTGGTGCTTCAAGTAGAACTCACTCAGGTGTCCGAGC
ATCGACAACTGGAAGGAAGGGCTCTAGCAAATCTAACACTGACAAGGCTGATTCAGCGAA
TGGTGATGCTGAAGATGGAAAATCAAAGAGGGCACAGTATGAGGGACCTGATCCAGACTT
GGCTGCAATGCTTGAAAGGGATGTTTTGGAGACTAGCCCTGGAGTGAGATGGGATGATGT
TGCAGGATTGAGTGAAGCCAAAAGACTCCTAGAGGAAGCTGTTGTCCTTCCTTTATGGAT
GCCTGAATATTTCCAGGGAATTAGGAGACCATGGAAAGGTGTTCTTATGTTTGGTCCTCC
TGGTACTGGCAAGACACTTTTGGCTAAAGCTGTTGCTACTGAGTGTGGTACAACATTCTT
CAATGTTTCTTCTGCTACCTTAGCCTCAAAATGGCGTGGGGAGAGTGAGCGCATGGTCCG
TTGCTTATTTGATCTTGCAAGAGCTTATGCTCCAAGTACTATTTTTATTGACGAGATTGA
TTCTCTTTGCAATGCTCGGGGGGCTTCAGGGGAGCATGAATCTTCCAGACGGGTGAAGTC
TGAACTTCTGGTTCAGGTTGATGGTGTAAACAACAGTTCTACAGGTGAAGATGGTAGTCG
AAAAATAGTGATGGTTCTGGCAGCTACAAATTTTCCATGGGATATAGATGAAGCACTCAG
GAGGAGGCTGGAAAAGCGTATATACATCCCTCTCCCAAATTTTGAGAGTCGCAAGGAGCT
TATACGGATCAATTTGAAAACTGTGGAGGTGGCTCCTGATGTAAATATCGACGAAGTGGC
TCGCCGCACTGAGGGGTACAGTGGAGATGATCTGACAAATGTTTGCCGGGATGCTTCCTT
AAATGGCATGAGACGGAAAATAGCAGGTAAGACACGAGATGAGATTAAGAACATGCCCAA
GGACGAGATTTCAAATGATCCTGTCGCTATGTGTGACTTTGAAGAAGCAATAACCAAGGT
TCAACGGAGTGTTTCTCAGGCTGATATTGAGCGCCATGAGAAGTGGTTTTCCGAATTCGG
ATCTGCATAGAAAAGAAGAAGCAATCTGAAAGATGTTGATTATTTGATTGCTGCTCTCAT
GACCTGTGTCTGTCGAGCGTCCAGTTTGTTGGGTGATTGTTTCTGTGACCCTGTTTGCTG
TTCT