Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_08s0105g00190.t01
CDS Infomation

cds chromosome:12X:8:7123045:7124512:-1 gene:VIT_08s0105g00190 gene_biotype:protein_coding transcript_biotype:protein_coding description:RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F6H6S5]
Sequence

ATGGAAGAAATCGATGTTCCTCCATTTTTCCTCTGCCCGATTTCTTTGGAGATTATGAAA
GATCCGGTGACGGTGTCAACGGGTATAACGTACGATCGGGAGAGCATCGAGAAGTGGTTG
TTTTCGGGCAAAAATAACACCTGTCCGGCGACGAAGCAGGTTCTGTCGGCGGACTCCGAT
CTGACTCCCAACCACACTCTCCGGCGGCTGATTCAGGCGTGGTGCACTCTCAATGCTTCA
AACGGTGTAGAGCGTATTCCGACGCCCAAGATTCCGATCAACAAGATCCAGATCGTGAAG
CTTCTCAATGATGCTAAGTCTCCACAGTTGCAGATGAAATGTATCGGAAAACTTCGAGCC
CTTGCGACTGAGAGCGACGCCAACAAGCGGTGCATTGAGTCCGCCGGTGCAGTTGAATTC
TTAGCTTCAATAGTGAGCAAAGCCAACTTCACAACATTCGAAGAGGAATCAGATAAAGGG
CTAGAGTCCAGGAGCGCGAGCAGTGAAGCTCTAAGTATTCTCCATTATCTCCTACTGTCA
GAAGCCGGGCTCAAGAAGCTTGTGGGAAAAAATGGTGAATTTGTGGGTTGCTTGGTACGA
GTACTACAACGAGGAAACTACGAGTCTCGAGCTTATGCTGTAATGCTATTGAGTTCGATG
CTCCAAGTTGCTGATCCAATACAATTAATCGCCTTGAAACCCGAATTCTTCGTGGAAGCA
GTGCAAGTTTTGCAGGATCATATATCTCACCAGGCCACAAAAGCTACACTCAAACTACTA
ATTGAGGTTTGTCCATGGGGGAGAAACAAGGTCAAAGCAGTGGAAGCCGGCGCAGTTTCG
ATATTGACAGAGCTTCTTCTCGCTTCTTCAGAAAAAAGGGCTTGTGAGATGATCCTAACG
GTGTTGGATCAGCTATGCGGGTGCGCGGAAGGAAGAGCCGAACTGTTGAAGCATGCAGCC
GGGATGGCTATAGTGTCAAAGAAGATACTGAGGGTTTCTCACGTGGCAAGTGAACGGGCA
GTGAGAATTCTGTATTCCATTTCCAAGTTCTCTGCAACTCCAAGTGTTCTTCAAGAGATG
TCGCAGCTGGGTGTGGTGGCGAAATTGTGTTTGGTGCTTCAAGTGGATTGTGGGAGCAGG
ACCAAGGAGAAAACCAGAGATATCCTCAGATTGCATGCCAGGGCATGGAAGAACTCTCCA
TGCATACCCACCAATTTGCTTTCTTCATATCCATAG

Peptide Sequence

PEP ID

VIT_08s0105g00190.t01
PEP Infomation

pep chromosome:12X:8:7123045:7124512:-1 gene:VIT_08s0105g00190 transcript:VIT_08s0105g00190.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F6H6S5]
Sequence

MEEIDVPPFFLCPISLEIMKDPVTVSTGITYDRESIEKWLFSGKNNTCPATKQVLSADSD
LTPNHTLRRLIQAWCTLNASNGVERIPTPKIPINKIQIVKLLNDAKSPQLQMKCIGKLRA
LATESDANKRCIESAGAVEFLASIVSKANFTTFEEESDKGLESRSASSEALSILHYLLLS
EAGLKKLVGKNGEFVGCLVRVLQRGNYESRAYAVMLLSSMLQVADPIQLIALKPEFFVEA
VQVLQDHISHQATKATLKLLIEVCPWGRNKVKAVEAGAVSILTELLLASSEKRACEMILT
VLDQLCGCAEGRAELLKHAAGMAIVSKKILRVSHVASERAVRILYSISKFSATPSVLQEM
SQLGVVAKLCLVLQVDCGSRTKEKTRDILRLHARAWKNSPCIPTNLLSSYP

Transcript Sequence

Transcript ID

VIT_08s0105g00190.t01
Transcript Infomation

cdna chromosome:12X:8:7123045:7124512:-1 gene:VIT_08s0105g00190 gene_biotype:protein_coding transcript_biotype:protein_coding description:RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F6H6S5]
Sequence

CAAGATTTCTTTTAAACTTGATTCTTGATTCAGCTCCTTTTCTGGGTGATGGAAGAAATC
GATGTTCCTCCATTTTTCCTCTGCCCGATTTCTTTGGAGATTATGAAAGATCCGGTGACG
GTGTCAACGGGTATAACGTACGATCGGGAGAGCATCGAGAAGTGGTTGTTTTCGGGCAAA
AATAACACCTGTCCGGCGACGAAGCAGGTTCTGTCGGCGGACTCCGATCTGACTCCCAAC
CACACTCTCCGGCGGCTGATTCAGGCGTGGTGCACTCTCAATGCTTCAAACGGTGTAGAG
CGTATTCCGACGCCCAAGATTCCGATCAACAAGATCCAGATCGTGAAGCTTCTCAATGAT
GCTAAGTCTCCACAGTTGCAGATGAAATGTATCGGAAAACTTCGAGCCCTTGCGACTGAG
AGCGACGCCAACAAGCGGTGCATTGAGTCCGCCGGTGCAGTTGAATTCTTAGCTTCAATA
GTGAGCAAAGCCAACTTCACAACATTCGAAGAGGAATCAGATAAAGGGCTAGAGTCCAGG
AGCGCGAGCAGTGAAGCTCTAAGTATTCTCCATTATCTCCTACTGTCAGAAGCCGGGCTC
AAGAAGCTTGTGGGAAAAAATGGTGAATTTGTGGGTTGCTTGGTACGAGTACTACAACGA
GGAAACTACGAGTCTCGAGCTTATGCTGTAATGCTATTGAGTTCGATGCTCCAAGTTGCT
GATCCAATACAATTAATCGCCTTGAAACCCGAATTCTTCGTGGAAGCAGTGCAAGTTTTG
CAGGATCATATATCTCACCAGGCCACAAAAGCTACACTCAAACTACTAATTGAGGTTTGT
CCATGGGGGAGAAACAAGGTCAAAGCAGTGGAAGCCGGCGCAGTTTCGATATTGACAGAG
CTTCTTCTCGCTTCTTCAGAAAAAAGGGCTTGTGAGATGATCCTAACGGTGTTGGATCAG
CTATGCGGGTGCGCGGAAGGAAGAGCCGAACTGTTGAAGCATGCAGCCGGGATGGCTATA
GTGTCAAAGAAGATACTGAGGGTTTCTCACGTGGCAAGTGAACGGGCAGTGAGAATTCTG
TATTCCATTTCCAAGTTCTCTGCAACTCCAAGTGTTCTTCAAGAGATGTCGCAGCTGGGT
GTGGTGGCGAAATTGTGTTTGGTGCTTCAAGTGGATTGTGGGAGCAGGACCAAGGAGAAA
ACCAGAGATATCCTCAGATTGCATGCCAGGGCATGGAAGAACTCTCCATGCATACCCACC
AATTTGCTTTCTTCATATCCATAGGCCCACCGAGAGAACGTGCAAATTCATTCTTTCTTA
TTTTCCCCCTTTTGTGTACATAATTAATTGATTGGATGAATACCTTAGAATAGACTCTCT
ACATGGGCATTAAGCAGTGCCCACTGAAACATTTTATGGCACATAGATTGCTATTTTCAG
AAAATTTATGTTCCACACAACATTTCAG