Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_08s0058g01100.t01
CDS Infomation

cds chromosome:12X:8:10460503:10462965:1 gene:VIT_08s0058g01100 gene_biotype:protein_coding transcript_biotype:protein_coding description:RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F6GXX9]
Sequence

ATGGCGATATCTCCACAAAACTTTCCCAGAAAACGGCGTCCATCCGCCGGATCGTTCATT
TCTCCTACCTTATCCGATCGCAGATTGGTTCAATCTCTGCTTCTGGTCTCTCAAGAGATT
TCGTCTCTGGCGCCGCTTCAGTTTCTTCTCAAGCGCAATTCCGTTTCAATTATTCGCAAA
TCTAATCTCCTCGCCTTCCTGTTCGAAGAGCTTCTGCGCAATCCGGTGTCCTGTTTCGCT
CCTACGGCTATCCTCTGCTTTGAAGAAATGTATATAGTCTTGCAAAGGATGAAAACATTG
ATCGAGGATTGTTCCAACGGAAGCAGGACATGGCTTCTCATGCAGAACGAATCGGTTTCC
AACGGTTTTCATGAACTCACTCTGGATTTATCGACCTTGTTGGATATTATTCCGGTGAAA
GGCCTGGATTTGGTCGAAGATATTGAAGAACTGGTCCTTTTAATCAGAAAACAGTGTTCG
GAAACCGCTGCTTATGTAGATCCCACAGATGAAACTCTCAGACGAGATTTACTGAAAATG
CTCGATCAGATCAAGAGGGAGATTGTTCCCGATCATAAAAAATTAGCCGAGATATTTGAG
AAATTAGATTTACAAGACTCCGCAAGTTGCAGTGATGAGATTAAAAGCCTTGAAGAAGAG
TTTCAGAATCAAAGGGATGACAAAAGCAAATCTGAAGTCACAGCATTGATCGGCCTGGTC
CGTTACGCCAAGTGCGTTCTCTTCGGAGCATCCACGCCCAAGTCCCACGGTCGGCGGCAA
AAATCCATGACGGACACAATTATACCGGCCGACTTCCGGTGTCCGATCACTCTCGACCTG
ATGCGGGACCCAGTAGTCGTGGCAACGGGACAGACGTATGATCGGACATCGATCAATCGC
TGGATCGAATCTGGACACAACATGTGTCCCAAGACAGGTCAGATCCTAGCCCACACAAAC
CTAATCCAAAACCGCGCTCTCAGGAACCTCATCATACTATGGTGCCGGGAGCAAGAAATT
CCATTCCAAACAACGGAAGTCAACGACAAAGTTAAAGCCGCCACGCAAAACAAAACGCTT
TTCGGCGCCACGAAGATGACCGTGTTATTTCTCATCAACAAGTTAACCGATTCAGAGTCG
GTGGAGGCCACGAATCGCGTGGTTCACGAGCTTCGCGTACTCGCCAAGACAGATTCGGAG
AGCCGAGCCTGCATTGCCGAAGCAGGAGCTATACCTTTGCTGGTGAGGTTCTTGGGTTCT
GACAACCCAAGCCTCCAGGTCAACGCCGTCACAACGCTCCTCAACCTTTCCATCCTGGAA
GCCAACAAGACCAGGATAATGGAAATAGATGGAGCTCTGAACGGCGTCATCGAGGTGCTG
AGATCAGGTGCCACGTGGGAGGCGAAGGGCAACGCGGCAGCCACCATATTTAGCCTAGCT
GGAGTGCAGTCGTATAGGAAGAGATTGGGGAAGAAGACGCGCGTCATAAAGGGGTTGATG
GATTTGGCTAAAGGGGGACCCGCGTCTTCGAGAAGAGATGCATTGGTGGCAATTTTAAGT
TTGGCGGGTGAAAGAGATACAGTTGGGAGGTTAATCGAAGGAGGAGTGGTGGAGATGGTC
ATTGAAGTAATGGCAGCATCACCGGAGGAGGCTGAGGAGGCTGTGACTGTACTGGAGGTG
GTGGTGCGGAGAGGTGGATTAGTGGCAGTTGCTGCAGCTTACCATGCAATCAAGAAACTG
AGTGTGGTGTTGAGGAGCGGATCGGACAGAGCAAGAGAGAGTGCCGCGGCCACGCTTGTT
AATATTTGTAGAAAAGGAGGGTCGGAGACGGTGGCAGCGCTTGCGGCAATGCCAGGAATA
GAGAGAGTGATATGGGAGTTGATGGGAACTGGAACTGAGAGATGTAGAAGGAAAGCAGCG
TCGTTGTTGAGAATGCTCCGGAGATGGGCAGCTGGGTTGGATGAGGATGTACCCACTACC
ACTGGCCACTCCACCACTGTAACCACTACCTCCAGGCCAGTACTGCACAGCTGA

Peptide Sequence

PEP ID

VIT_08s0058g01100.t01
PEP Infomation

pep chromosome:12X:8:10460503:10462965:1 gene:VIT_08s0058g01100 transcript:VIT_08s0058g01100.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F6GXX9]
Sequence

MAISPQNFPRKRRPSAGSFISPTLSDRRLVQSLLLVSQEISSLAPLQFLLKRNSVSIIRK
SNLLAFLFEELLRNPVSCFAPTAILCFEEMYIVLQRMKTLIEDCSNGSRTWLLMQNESVS
NGFHELTLDLSTLLDIIPVKGLDLVEDIEELVLLIRKQCSETAAYVDPTDETLRRDLLKM
LDQIKREIVPDHKKLAEIFEKLDLQDSASCSDEIKSLEEEFQNQRDDKSKSEVTALIGLV
RYAKCVLFGASTPKSHGRRQKSMTDTIIPADFRCPITLDLMRDPVVVATGQTYDRTSINR
WIESGHNMCPKTGQILAHTNLIQNRALRNLIILWCREQEIPFQTTEVNDKVKAATQNKTL
FGATKMTVLFLINKLTDSESVEATNRVVHELRVLAKTDSESRACIAEAGAIPLLVRFLGS
DNPSLQVNAVTTLLNLSILEANKTRIMEIDGALNGVIEVLRSGATWEAKGNAAATIFSLA
GVQSYRKRLGKKTRVIKGLMDLAKGGPASSRRDALVAILSLAGERDTVGRLIEGGVVEMV
IEVMAASPEEAEEAVTVLEVVVRRGGLVAVAAAYHAIKKLSVVLRSGSDRARESAAATLV
NICRKGGSETVAALAAMPGIERVIWELMGTGTERCRRKAASLLRMLRRWAAGLDEDVPTT
TGHSTTVTTTSRPVLHS

Transcript Sequence

Transcript ID

VIT_08s0058g01100.t01
Transcript Infomation

cdna chromosome:12X:8:10460503:10462965:1 gene:VIT_08s0058g01100 gene_biotype:protein_coding transcript_biotype:protein_coding description:RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F6GXX9]
Sequence

AGGACCCAATAAACAAATTTGCAGTTGAATTGAACTGCTCAATTTTAGGCATTGAAGGAA
AACAGGACCTCAATTCTTACCCAGTAAAAGGCCAGCCAAATAGAAAAACCAACTCTTATT
CCAGAATCCAAATACAAGCAAATCCAGTCAAAACCAACCGTCCTAGCTGCCGTTTTATTT
TATTAATCTTCTCTTCTAAGAAAATATAAAAGGAAAAGGAGCACCAATTTGGTAGTAGCT
GTTCCGCAATCATTCAATTCTTTCTTCAGCTTCAATCAAAAGAATTCACAAGTTCGCATT
GGCTTCTAAGAATTTCATTCACTCATTTTCTGATTGTTTCTCGTCAATCTATGGCGATAT
CTCCACAAAACTTTCCCAGAAAACGGCGTCCATCCGCCGGATCGTTCATTTCTCCTACCT
TATCCGATCGCAGATTGGTTCAATCTCTGCTTCTGGTCTCTCAAGAGATTTCGTCTCTGG
CGCCGCTTCAGTTTCTTCTCAAGCGCAATTCCGTTTCAATTATTCGCAAATCTAATCTCC
TCGCCTTCCTGTTCGAAGAGCTTCTGCGCAATCCGGTGTCCTGTTTCGCTCCTACGGCTA
TCCTCTGCTTTGAAGAAATGTATATAGTCTTGCAAAGGATGAAAACATTGATCGAGGATT
GTTCCAACGGAAGCAGGACATGGCTTCTCATGCAGAACGAATCGGTTTCCAACGGTTTTC
ATGAACTCACTCTGGATTTATCGACCTTGTTGGATATTATTCCGGTGAAAGGCCTGGATT
TGGTCGAAGATATTGAAGAACTGGTCCTTTTAATCAGAAAACAGTGTTCGGAAACCGCTG
CTTATGTAGATCCCACAGATGAAACTCTCAGACGAGATTTACTGAAAATGCTCGATCAGA
TCAAGAGGGAGATTGTTCCCGATCATAAAAAATTAGCCGAGATATTTGAGAAATTAGATT
TACAAGACTCCGCAAGTTGCAGTGATGAGATTAAAAGCCTTGAAGAAGAGTTTCAGAATC
AAAGGGATGACAAAAGCAAATCTGAAGTCACAGCATTGATCGGCCTGGTCCGTTACGCCA
AGTGCGTTCTCTTCGGAGCATCCACGCCCAAGTCCCACGGTCGGCGGCAAAAATCCATGA
CGGACACAATTATACCGGCCGACTTCCGGTGTCCGATCACTCTCGACCTGATGCGGGACC
CAGTAGTCGTGGCAACGGGACAGACGTATGATCGGACATCGATCAATCGCTGGATCGAAT
CTGGACACAACATGTGTCCCAAGACAGGTCAGATCCTAGCCCACACAAACCTAATCCAAA
ACCGCGCTCTCAGGAACCTCATCATACTATGGTGCCGGGAGCAAGAAATTCCATTCCAAA
CAACGGAAGTCAACGACAAAGTTAAAGCCGCCACGCAAAACAAAACGCTTTTCGGCGCCA
CGAAGATGACCGTGTTATTTCTCATCAACAAGTTAACCGATTCAGAGTCGGTGGAGGCCA
CGAATCGCGTGGTTCACGAGCTTCGCGTACTCGCCAAGACAGATTCGGAGAGCCGAGCCT
GCATTGCCGAAGCAGGAGCTATACCTTTGCTGGTGAGGTTCTTGGGTTCTGACAACCCAA
GCCTCCAGGTCAACGCCGTCACAACGCTCCTCAACCTTTCCATCCTGGAAGCCAACAAGA
CCAGGATAATGGAAATAGATGGAGCTCTGAACGGCGTCATCGAGGTGCTGAGATCAGGTG
CCACGTGGGAGGCGAAGGGCAACGCGGCAGCCACCATATTTAGCCTAGCTGGAGTGCAGT
CGTATAGGAAGAGATTGGGGAAGAAGACGCGCGTCATAAAGGGGTTGATGGATTTGGCTA
AAGGGGGACCCGCGTCTTCGAGAAGAGATGCATTGGTGGCAATTTTAAGTTTGGCGGGTG
AAAGAGATACAGTTGGGAGGTTAATCGAAGGAGGAGTGGTGGAGATGGTCATTGAAGTAA
TGGCAGCATCACCGGAGGAGGCTGAGGAGGCTGTGACTGTACTGGAGGTGGTGGTGCGGA
GAGGTGGATTAGTGGCAGTTGCTGCAGCTTACCATGCAATCAAGAAACTGAGTGTGGTGT
TGAGGAGCGGATCGGACAGAGCAAGAGAGAGTGCCGCGGCCACGCTTGTTAATATTTGTA
GAAAAGGAGGGTCGGAGACGGTGGCAGCGCTTGCGGCAATGCCAGGAATAGAGAGAGTGA
TATGGGAGTTGATGGGAACTGGAACTGAGAGATGTAGAAGGAAAGCAGCGTCGTTGTTGA
GAATGCTCCGGAGATGGGCAGCTGGGTTGGATGAGGATGTACCCACTACCACTGGCCACT
CCACCACTGTAACCACTACCTCCAGGCCAGTACTGCACAGCTGAAATGTGTTGTTTCAAT
ATTTGTTTCATTTAATTTGTAAATTGACATTCTTCTGGGTAAAATGATTTATTTTCTGTT
TCG