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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_08s0040g02740.t01
CDS Infomation

cds chromosome:12X:8:13772697:13781967:-1 gene:VIT_08s0040g02740 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectate lyase [Source:UniProtKB/TrEMBL;Acc:F6HQX5]
Sequence

ATGGGAGGTGCTCACGGCCGTTGCTCTGGCACTCATCGGAAGCATCCCACCCCCGCCTAC
ACCACTTTTCCGGACACAACAGCCCCTGCCTCAGCCTTTGGTCGTGATCCATCAAACACA
GTCCGCACCAACATGTCTTGTCTGCCTTACGCTCATGTTGATTCCAACTTAAGAGCTCTG
GCTGGGCAGGCCGAGGGTTTCGGCCGTCTTGCCATTGGTGGTCTTCACGGACCTCTTTAT
CATGTCACCACTCTAGCAGATGATGGGCCAGGATCACTTCGTGATGGATGTCGTAAGAAA
GAACCACTTTGGATTGTCTTTGAAGTTTCAGGCATCATTCATCTCTCATCTTACCTGAAT
GTATCATCTTATAAAACTATTGATGGGCGGGGCCAGAGGATAAAACTCACAGGAAAGGGT
TTAAGGCTGAAGGAATGTGAGCATGTAATTATATGCAATCTAGAGTTTGAAGGTGGTAGA
GGACCTGATGTTGATGGCATTCAAATAAAACCTAATTCAAAGCACATATGGATTGATCGT
TGCAGCCTCCGTGATTTTGATGATGGACTGATTGATATCACTCGTGCAAGCACGGATATT
ACCATTTCCAGATGTCACTTCTCACAGCATGACAAGACGATGCTCATTGGAGCAGACCCA
TCTCACACTGGTGATAGATGTATTCGGGTGACCATTCATCATTGCTTTTTCGATGGCACT
CGACAGCGGCACCCTCGTGTTAGATATGGGAAAGTACATCTATATAATAATTACACCAGA
AACTGGGGCATTTATGCTGTTTGTGCCAGTGTAGAATCACAGATATACTCCCAATGCAAT
ATATACGAAGCAGGACATAAGAAGGTGGCATTTAAATATCTTACAGAGAAGGCAGCTGAC
AAAGAAGAGGAAAGAACTGGCTGTCTAAGGTCAGAAGGGGACTTGTTCATAAACGGAACT
CAAGCAGGCTTAATGACTGTGGCCAGTGAAATGTTTCACCCTCGGGAATTCTATCCCACA
TGGACAGTTGAGGCTCCTTCTGATGCTCTTAAGCAGGTTCTCCATCATTGTACAGGATGG
CAGTGTGTTCCCCGGCCAGCAGATGAAGCAGCAATTGCTTAG

Peptide Sequence

PEP ID

VIT_08s0040g02740.t01
PEP Infomation

pep chromosome:12X:8:13772697:13781967:-1 gene:VIT_08s0040g02740 transcript:VIT_08s0040g02740.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectate lyase [Source:UniProtKB/TrEMBL;Acc:F6HQX5]
Sequence

MGGAHGRCSGTHRKHPTPAYTTFPDTTAPASAFGRDPSNTVRTNMSCLPYAHVDSNLRAL
AGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLRDGCRKKEPLWIVFEVSGIIHLSSYLN
VSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGPDVDGIQIKPNSKHIWIDR
CSLRDFDDGLIDITRASTDITISRCHFSQHDKTMLIGADPSHTGDRCIRVTIHHCFFDGT
RQRHPRVRYGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGHKKVAFKYLTEKAAD
KEEERTGCLRSEGDLFINGTQAGLMTVASEMFHPREFYPTWTVEAPSDALKQVLHHCTGW
QCVPRPADEAAIA

Transcript Sequence

Transcript ID

VIT_08s0040g02740.t01
Transcript Infomation

cdna chromosome:12X:8:13772697:13781967:-1 gene:VIT_08s0040g02740 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectate lyase [Source:UniProtKB/TrEMBL;Acc:F6HQX5]
Sequence

TTTTTATTATTATTTTTTTTAACTAATTCATAATTTCATACATTAAATGGGAGGTGCTCA
CGGCCGTTGCTCTGGCACTCATCGGAAGCATCCCACCCCCGCCTACACCACTTTTCCGGA
CACAACAGCCCCTGCCTCAGCCTTTGGTCGTGATCCATCAAACACAGTCCGCACCAACAT
GTCTTGTCTGCCTTACGCTCATGTTGATTCCAACTTAAGAGCTCTGGCTGGGCAGGCCGA
GGGTTTCGGCCGTCTTGCCATTGGTGGTCTTCACGGACCTCTTTATCATGTCACCACTCT
AGCAGATGATGGGCCAGGATCACTTCGTGATGGATGTCGTAAGAAAGAACCACTTTGGAT
TGTCTTTGAAGTTTCAGGCATCATTCATCTCTCATCTTACCTGAATGTATCATCTTATAA
AACTATTGATGGGCGGGGCCAGAGGATAAAACTCACAGGAAAGGGTTTAAGGCTGAAGGA
ATGTGAGCATGTAATTATATGCAATCTAGAGTTTGAAGGTGGTAGAGGACCTGATGTTGA
TGGCATTCAAATAAAACCTAATTCAAAGCACATATGGATTGATCGTTGCAGCCTCCGTGA
TTTTGATGATGGACTGATTGATATCACTCGTGCAAGCACGGATATTACCATTTCCAGATG
TCACTTCTCACAGCATGACAAGACGATGCTCATTGGAGCAGACCCATCTCACACTGGTGA
TAGATGTATTCGGGTGACCATTCATCATTGCTTTTTCGATGGCACTCGACAGCGGCACCC
TCGTGTTAGATATGGGAAAGTACATCTATATAATAATTACACCAGAAACTGGGGCATTTA
TGCTGTTTGTGCCAGTGTAGAATCACAGATATACTCCCAATGCAATATATACGAAGCAGG
ACATAAGAAGGTGGCATTTAAATATCTTACAGAGAAGGCAGCTGACAAAGAAGAGGAAAG
AACTGGCTGTCTAAGGTCAGAAGGGGACTTGTTCATAAACGGAACTCAAGCAGGCTTAAT
GACTGTGGCCAGTGAAATGTTTCACCCTCGGGAATTCTATCCCACATGGACAGTTGAGGC
TCCTTCTGATGCTCTTAAGCAGGTTCTCCATCATTGTACAGGATGGCAGTGTGTTCCCCG
GCCAGCAGATGAAGCAGCAATTGCTTAGTAGCTTCAACTTTCATCCATAGTATATAATAA
ATCTGTTTTGCATCACTCTGAGGTTGCACACATCTCCTTTTCCTTTTTTTACCCGGTTGC
CATAATATAAGAATAAAATGTGGTAATTCTGATTATATTGTGTCATTTGTTGTGTAGTCT
GTCCAATTTTCTCCTC