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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_08s0040g01700.t01
CDS Infomation

cds chromosome:12X:8:12821479:12826415:-1 gene:VIT_08s0040g01700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Isocitrate dehydrogenase [NAD] subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:D7TQM9]
Sequence

ATGGGTACCCAAATTCTGAGACGCCTTCTTGGAAGCCCTAACTCATCTAGGGCTTTTTCA
TCCTTCAATCGGTCCTTCTCTTCATCCGATTCCTCCTCCAATCTGATCCGCGCCACTCTT
TTCCCCGGCGATGGAATCGGGCCCGAGATCGCTGAGGCCGTCAAACAGGTATTTAGAGCA
GCTGACGTGCCAATTGAATGGGAGGAACACTATGTGGGGGACCAAATAGATCCAAGAACC
CAGAGTTTTCTCACATGGGAAAGTCTAGAATCTGTGCGGCAGAATGGTGTAGGCTTGAAA
GGGCCAATGGCCACACCAATTGGAAAAGGACATCGATCCTTGAACCTTACACTAAGGAAA
GAGCTTAATTTATATGCCAATGTTAGGCCTTGCTACAGTCTCCCTGGGTATAAAACTCGG
TATGATGACGTAGATCTCATCACTATCCGTGAAAACACAGAAGGGGAGTACAGTGGACTT
GAACATCAAGTGGTGCGAGGTGTAGTTGAAAGCCTCAAAATAATTACTCGTCAGGCTAGT
TTGAGGGTGGCTGAGTATGCATTTCACTATGCCAAGACCCATGGAAGAGAGAGGGTATCC
GCAATACACAAAGCCAACATCATGCAGAAGACTGATGGCCTCTTTCTTAAGTGTTGTCGG
GAAGTTGCAGAGAAGTACCCAGAGATAAAATATGAGGAAGTTGTCATTGACAATTGCTGT
ATGATGCTTGTGAAGAATCCTGCGCTTTTTGATGTGTTGGTGATGCCTAACCTCTATGGT
GACATTATTAGTGATCTCTGTGCTGGCTTGATTGGGGGACTAGGCTTAACACCAAGCTGC
AATATTGGAGAGGGAGGTATTGCTCTTGCTGAAGCCGTTCATGGTTCTGCACCAGATATT
GCTGGAAAGAATATGGCAAACCCAACTGCTTTGATGTTGAGTGCTGTCACAATGCTTCGC
CATTTGAAGCTCCATGATAAAGCTGACCAGATCCAGAATGCCATCCTCAACACAATTTCG
GAGGGAAGGTATAGAACTGCCGACCTTGGTGGCAGTTCAACAACAACTGACTTTACAAAG
GCAATTTGTGACCATCTTTGA

Peptide Sequence

PEP ID

VIT_08s0040g01700.t01
PEP Infomation

pep chromosome:12X:8:12821479:12826415:-1 gene:VIT_08s0040g01700 transcript:VIT_08s0040g01700.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Isocitrate dehydrogenase [NAD] subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:D7TQM9]
Sequence

MGTQILRRLLGSPNSSRAFSSFNRSFSSSDSSSNLIRATLFPGDGIGPEIAEAVKQVFRA
ADVPIEWEEHYVGDQIDPRTQSFLTWESLESVRQNGVGLKGPMATPIGKGHRSLNLTLRK
ELNLYANVRPCYSLPGYKTRYDDVDLITIRENTEGEYSGLEHQVVRGVVESLKIITRQAS
LRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIKYEEVVIDNCC
MMLVKNPALFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGEGGIALAEAVHGSAPDI
AGKNMANPTALMLSAVTMLRHLKLHDKADQIQNAILNTISEGRYRTADLGGSSTTTDFTK
AICDHL

Transcript Sequence

Transcript ID

VIT_08s0040g01700.t01
Transcript Infomation

cdna chromosome:12X:8:12821479:12826415:-1 gene:VIT_08s0040g01700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Isocitrate dehydrogenase [NAD] subunit, mitochondrial [Source:UniProtKB/TrEMBL;Acc:D7TQM9]
Sequence

CTCTCTCGCTCCTTTTTATTTGTCTTTATTAATATTCAATTTTATTATTACATAAAATCT
CTCTTTCTCTCTCAAAACTCTGAGTCGCGAATCTACGTTGAGTCGCCAAATGATGGGTAC
CCAAATTCTGAGACGCCTTCTTGGAAGCCCTAACTCATCTAGGGCTTTTTCATCCTTCAA
TCGGTCCTTCTCTTCATCCGATTCCTCCTCCAATCTGATCCGCGCCACTCTTTTCCCCGG
CGATGGAATCGGGCCCGAGATCGCTGAGGCCGTCAAACAGGTATTTAGAGCAGCTGACGT
GCCAATTGAATGGGAGGAACACTATGTGGGGGACCAAATAGATCCAAGAACCCAGAGTTT
TCTCACATGGGAAAGTCTAGAATCTGTGCGGCAGAATGGTGTAGGCTTGAAAGGGCCAAT
GGCCACACCAATTGGAAAAGGACATCGATCCTTGAACCTTACACTAAGGAAAGAGCTTAA
TTTATATGCCAATGTTAGGCCTTGCTACAGTCTCCCTGGGTATAAAACTCGGTATGATGA
CGTAGATCTCATCACTATCCGTGAAAACACAGAAGGGGAGTACAGTGGACTTGAACATCA
AGTGGTGCGAGGTGTAGTTGAAAGCCTCAAAATAATTACTCGTCAGGCTAGTTTGAGGGT
GGCTGAGTATGCATTTCACTATGCCAAGACCCATGGAAGAGAGAGGGTATCCGCAATACA
CAAAGCCAACATCATGCAGAAGACTGATGGCCTCTTTCTTAAGTGTTGTCGGGAAGTTGC
AGAGAAGTACCCAGAGATAAAATATGAGGAAGTTGTCATTGACAATTGCTGTATGATGCT
TGTGAAGAATCCTGCGCTTTTTGATGTGTTGGTGATGCCTAACCTCTATGGTGACATTAT
TAGTGATCTCTGTGCTGGCTTGATTGGGGGACTAGGCTTAACACCAAGCTGCAATATTGG
AGAGGGAGGTATTGCTCTTGCTGAAGCCGTTCATGGTTCTGCACCAGATATTGCTGGAAA
GAATATGGCAAACCCAACTGCTTTGATGTTGAGTGCTGTCACAATGCTTCGCCATTTGAA
GCTCCATGATAAAGCTGACCAGATCCAGAATGCCATCCTCAACACAATTTCGGAGGGAAG
GTATAGAACTGCCGACCTTGGTGGCAGTTCAACAACAACTGACTTTACAAAGGCAATTTG
TGACCATCTTTGAAGAATATTTCTGCATAGAATTTGTATTTTTTTTAACTGATAAGAGAC
CAAAAGTTGATATTTGCAACGGGTTCAACAACAGTTTGTTCCATGTGCTGTTCCTGTTGG
AGCCACGGAGAAGACCTTTTCTAGTTGTTTTTTTGGGTGATCACCTTTGATGATGACTTA
AATGAAGATCATCAGATTATGTCACTGTTCAGCGATAAATAGGTTCCTGGGCAGCTGCAG
ATAGACTAAAATATGGTTTAGGCCCAGGAACTTGCTGGCATGTACAAAACGTCTGAAAAA
TAAAGAGATGAATCCCGTCTTAGGAGCAT