Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_08s0040g01560.t01
CDS Infomation

cds chromosome:12X:8:12688269:12693606:-1 gene:VIT_08s0040g01560 gene_biotype:protein_coding transcript_biotype:protein_coding description:RNA polymerase sigma factor [Source:UniProtKB/TrEMBL;Acc:D7TQP0]
Sequence

ATGGAGGCTGGAACCAACATTCTTTCTTCAACTCCTTCATTTCCTCCAAGAACTCATTTT
AGAAATTCTTCTTCTTCAGTTTTAATGCTTCATGACCAAGTAGCTCCTGCAGTTGCCTCA
ATTCCAACAACTATTGCTCGAAAATTTCCTACTTCCGTTCTTTTGCAAGAGCAGCGTGAT
GAGTATAGGCCTTTTCCACAGGCACTCAAGGATGAGAGAACATTCCAGGCAACATTGGAG
AAGAGGCAGATGGAGATTGTGGTCTCAGCTGATGAAGAGAACTCTGATGATCATAATCAA
TACATGGTGAACTTTGAGCGCCAGTTGCTTCTCCAGCCTGGTTTATGGTATTCATTGCCA
TCCTCCCAAACAGGAGAAAAGTCACCCTTTTCCTCGAGTATTATGAAGTCTATTACAACT
GATATTGAGAATTCTATGGATGTTAAACCATGCGATGTGCTTGCACTTGCTAAGAAAGCT
TTATCAGCCTCAAAACAAGCAGTCTCATTATATGAGAATGCAAAACTCCTTGGAGCTGAT
CTTGAGGATTCTCCTTCTCCTAGTTTGGGGGCCATAAGTTCACCTAATCTTCCACTCGAG
GAGAAAACAGTGAGGTCAACACGGCTTCTAGAGAGGCGATCTAAAAAAAGAAGGAATCCA
AAAGTTGCAGTTCATGAAAACCATGGTTCTAGAAGGGCAGAGGTACAAAGAAAGATAAAT
GAAGGGTATGATCCAAAAGACCCTCTTCGTTTATTCTTGTGGGGTCCAGAAACAAGAAAA
CTTCTTACTGCTAAAGAAGAATCTGAATTGATTGTTCAGATACAGGAGCTAATGAGATTA
GAAGAGGTGAAGAAAAGGCTTCAATCTCATCTTAAGCGTGAGCCAACGGTGGTTGAATGG
GCTGAAGCTGTTGGGCTTAGTTGTCAAGTCTTGCAGTCACAACTTCACTCTGGAAACCGT
AGCCGGCAAAAGCTGATTTATGCTAATCTTCGTATGGTGGTTCATATTGCTAAACAATAT
CAGGGGCGTGGTCTCAACCTTCAGGACTTATTACAGGAGGGAAGCATGGGTCTTATGAAC
AGTGTTGAGAAGTTCAAGCCAAATGCTGGTTGCCGATTTGCTTCTTATGCATACTGGTGG
ATAAGGCAAGCAGTTAGGAAGGCCATATTTCAACATTCCAGGACAATCCGTTTGCCAGAG
AATATGTATAGCCTCCTGGGCAAGGTAAAGGAAGCAAAGAGACTGTTCATTCAAGAAGGG
CATCATGACCCAACAAAAGAGGAAATTGCAGAACGTGTTGGAATTACAATTGAGAAGTTG
CAAAGACTGCTACTACACACAAGGATGCCACTTTCAATGCAACAGCCTGTGTGGGCAGAT
CAAGATACCACATTTCAGGAAGTCACTGCAGACACTGGAATTGAGATCCCAGATGTGAGT
GTGGCAAAGCAACTGATGAGGCAACATGTAAGGAACCTCCTACATGTTCTCACTCCTAAA
GAAAGGCGGATAATTCGACTAAGATTCGGCATTGGGGACGGCATTCCCAGAACACTGTCT
GAAATTGGGCTTGTGTTTGGGTTTTCTAAGGAGAGAGTGCGTCAGCTGGAGCAACGAGCA
CTTCACAAGCTCAAACAGTGTCTCAGCAGCCATGGTCTGGAGTCATATACTGATTTACTT
GTTTAA

Peptide Sequence

PEP ID

VIT_08s0040g01560.t01
PEP Infomation

pep chromosome:12X:8:12688269:12693606:-1 gene:VIT_08s0040g01560 transcript:VIT_08s0040g01560.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:RNA polymerase sigma factor [Source:UniProtKB/TrEMBL;Acc:D7TQP0]
Sequence

MEAGTNILSSTPSFPPRTHFRNSSSSVLMLHDQVAPAVASIPTTIARKFPTSVLLQEQRD
EYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDDHNQYMVNFERQLLLQPGLWYSLP
SSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLYENAKLLGAD
LEDSPSPSLGAISSPNLPLEEKTVRSTRLLERRSKKRRNPKVAVHENHGSRRAEVQRKIN
EGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEW
AEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMN
SVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQEG
HHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTADTGIEIPDVS
VAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRA
LHKLKQCLSSHGLESYTDLLV

Transcript Sequence

Transcript ID

VIT_08s0040g01560.t01
Transcript Infomation

cdna chromosome:12X:8:12688269:12693606:-1 gene:VIT_08s0040g01560 gene_biotype:protein_coding transcript_biotype:protein_coding description:RNA polymerase sigma factor [Source:UniProtKB/TrEMBL;Acc:D7TQP0]
Sequence

GTAAGGGAGAATAGATAAGAGATAACGTGGGTATAGCGTCTCAATTTCTATGTACAGTTA
TTCATCAATGGAGGCTGGAACCAACATTCTTTCTTCAACTCCTTCATTTCCTCCAAGAAC
TCATTTTAGAAATTCTTCTTCTTCAGTTTTAATGCTTCATGACCAAGTAGCTCCTGCAGT
TGCCTCAATTCCAACAACTATTGCTCGAAAATTTCCTACTTCCGTTCTTTTGCAAGAGCA
GCGTGATGAGTATAGGCCTTTTCCACAGGCACTCAAGGATGAGAGAACATTCCAGGCAAC
ATTGGAGAAGAGGCAGATGGAGATTGTGGTCTCAGCTGATGAAGAGAACTCTGATGATCA
TAATCAATACATGGTGAACTTTGAGCGCCAGTTGCTTCTCCAGCCTGGTTTATGGTATTC
ATTGCCATCCTCCCAAACAGGAGAAAAGTCACCCTTTTCCTCGAGTATTATGAAGTCTAT
TACAACTGATATTGAGAATTCTATGGATGTTAAACCATGCGATGTGCTTGCACTTGCTAA
GAAAGCTTTATCAGCCTCAAAACAAGCAGTCTCATTATATGAGAATGCAAAACTCCTTGG
AGCTGATCTTGAGGATTCTCCTTCTCCTAGTTTGGGGGCCATAAGTTCACCTAATCTTCC
ACTCGAGGAGAAAACAGTGAGGTCAACACGGCTTCTAGAGAGGCGATCTAAAAAAAGAAG
GAATCCAAAAGTTGCAGTTCATGAAAACCATGGTTCTAGAAGGGCAGAGGTACAAAGAAA
GATAAATGAAGGGTATGATCCAAAAGACCCTCTTCGTTTATTCTTGTGGGGTCCAGAAAC
AAGAAAACTTCTTACTGCTAAAGAAGAATCTGAATTGATTGTTCAGATACAGGAGCTAAT
GAGATTAGAAGAGGTGAAGAAAAGGCTTCAATCTCATCTTAAGCGTGAGCCAACGGTGGT
TGAATGGGCTGAAGCTGTTGGGCTTAGTTGTCAAGTCTTGCAGTCACAACTTCACTCTGG
AAACCGTAGCCGGCAAAAGCTGATTTATGCTAATCTTCGTATGGTGGTTCATATTGCTAA
ACAATATCAGGGGCGTGGTCTCAACCTTCAGGACTTATTACAGGAGGGAAGCATGGGTCT
TATGAACAGTGTTGAGAAGTTCAAGCCAAATGCTGGTTGCCGATTTGCTTCTTATGCATA
CTGGTGGATAAGGCAAGCAGTTAGGAAGGCCATATTTCAACATTCCAGGACAATCCGTTT
GCCAGAGAATATGTATAGCCTCCTGGGCAAGGTAAAGGAAGCAAAGAGACTGTTCATTCA
AGAAGGGCATCATGACCCAACAAAAGAGGAAATTGCAGAACGTGTTGGAATTACAATTGA
GAAGTTGCAAAGACTGCTACTACACACAAGGATGCCACTTTCAATGCAACAGCCTGTGTG
GGCAGATCAAGATACCACATTTCAGGAAGTCACTGCAGACACTGGAATTGAGATCCCAGA
TGTGAGTGTGGCAAAGCAACTGATGAGGCAACATGTAAGGAACCTCCTACATGTTCTCAC
TCCTAAAGAAAGGCGGATAATTCGACTAAGATTCGGCATTGGGGACGGCATTCCCAGAAC
ACTGTCTGAAATTGGGCTTGTGTTTGGGTTTTCTAAGGAGAGAGTGCGTCAGCTGGAGCA
ACGAGCACTTCACAAGCTCAAACAGTGTCTCAGCAGCCATGGTCTGGAGTCATATACTGA
TTTACTTGTTTAAATGTTAACAAATATTCATGAGTTTTGGCCTTTGGAACTCTTTTCGAA
GTTGAGAGGAAGCTTTGAAGCTGAATTTACCAGCTACTGGTAGCTCAACTGATTATGAGA
GAGCGCCCTGAATGGGGTTTAGGCATTTTCTCAAGTGGTTTGTTAATATGTTCTTTGTAT