Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_08s0007g08560.t01
CDS Infomation

cds chromosome:12X:8:21950870:21953960:1 gene:VIT_08s0007g08560 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cytoplasmic tRNA 2-thiolation protein 2 [Source:UniProtKB/TrEMBL;Acc:D7THW2]
Sequence

ATGGCCTGCGGCGCCGGAAATTGTCAGTCCGGTTGCTTCCGGGACGACGACGACTCGGTC
GTGACGGAGAAGAAGAAGTTAACCAATCGGACTCTTTCAAGTGGCAGCGATATCGACCTT
CCCAATCACCATAATCTCTGCCTCAAGTGCAAGGTGAACGAGACCCTCGCCTCCTCCGGC
ACAGTCTCGGTCGACGGGGACATTGGCCGATTTTGCTTCGATTGCTTCCGCGGCAATCTA
TTCGGCAAGTTCAAACTCGCCGTCACCTCCAACGCTATGATTTCCCCAACGGATAACGTT
CTTGTCGCCTTCTCCGGCGGTCCTTCTTCCAGGGTGGCGTTGCAATTTGTACATGAGATG
CAGCATAAAGCGCAGAAGAATTTTGACGCAAGTAGAGATAGATCATTACCTGTATTTGGT
GTTGGCGTTGCTTTTGTCGATGAAAGTGCAGTTTCTCGGATTCCTTCCGATGAATTTGAC
AAAGCAATTCAAGATATGAAATCGATTGTTTCAAATTTAGCTCCTCCAGATAAAGCCTTT
CACGTTGTTCCCATTGAAAGTGTATACTCTTCAAATGGAAGGGATAGATTGGAAGAGTTG
CTGAATGCTGTTAAGGACGTAACAGGGAAGGAAGATCTTTTGCAGCATCTGCGGATGTTG
TCATTGCAAAAGAATGCTTATGAAAATGGGTATACCAAACTTCTTTTGGGATCATGCACA
TCGAGGATTGCTTGCCATGTGATTTCTGCAACTGTGAAGGGCCAAGGTTACTCCTTACCA
GCAGATATACAATATGTTGATGCAAGGTGGGAGATCCCTGTAGTGCTTCCACTTCGTGAC
TGTCTTGCACAAGAGCTGAACATGCTTTGTCGGCTTGATGGTTTGAAGACCATGGAGGTG
CTTAATAGTCCTCATTCTGGCATCAATGGCTTGGTTGCATCGTTTGTTACACTTTTGCAG
GAAGAGAACCCTTCTCGAGAATGCACGATAGTAAGAACAGCTGGAAAGTTGACTCCATTT
CATTTCAATCAGATTCCAGAAAGTGATGACTCTAATGTCCATTTGGCATCCCGACGGCGT
CAAAAGAAATTCAATCTCAAGCCTAATGAATCTGTACCCCCAGAGTCATATTGTCCTATC
TGCAATAGCCCACTTAGCAAATCTGATCATATAAATTTGAGCAGTCTTGGGAGTGATCAA
ACAAATGCTGATATTTTTGGGGCTACTTGTTGCCCAAGTTGCCAGTTTCAGATACTTCCC
AAAGAACCTGTGTCTATGGAGCATTTTTATTCCCTTCTTCCCCAGCAGTTTGTTGTTCAA
GCGAAGGACAGAAGCTTTAGTATGCAGAGACAGCTAAGGGAGCAAATACAAGATTTCCTG
CTATCCGATAGCGAAGATGGAACCTGA

Peptide Sequence

PEP ID

VIT_08s0007g08560.t01
PEP Infomation

pep chromosome:12X:8:21950870:21953960:1 gene:VIT_08s0007g08560 transcript:VIT_08s0007g08560.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cytoplasmic tRNA 2-thiolation protein 2 [Source:UniProtKB/TrEMBL;Acc:D7THW2]
Sequence

MACGAGNCQSGCFRDDDDSVVTEKKKLTNRTLSSGSDIDLPNHHNLCLKCKVNETLASSG
TVSVDGDIGRFCFDCFRGNLFGKFKLAVTSNAMISPTDNVLVAFSGGPSSRVALQFVHEM
QHKAQKNFDASRDRSLPVFGVGVAFVDESAVSRIPSDEFDKAIQDMKSIVSNLAPPDKAF
HVVPIESVYSSNGRDRLEELLNAVKDVTGKEDLLQHLRMLSLQKNAYENGYTKLLLGSCT
SRIACHVISATVKGQGYSLPADIQYVDARWEIPVVLPLRDCLAQELNMLCRLDGLKTMEV
LNSPHSGINGLVASFVTLLQEENPSRECTIVRTAGKLTPFHFNQIPESDDSNVHLASRRR
QKKFNLKPNESVPPESYCPICNSPLSKSDHINLSSLGSDQTNADIFGATCCPSCQFQILP
KEPVSMEHFYSLLPQQFVVQAKDRSFSMQRQLREQIQDFLLSDSEDGT

Transcript Sequence

Transcript ID

VIT_08s0007g08560.t01
Transcript Infomation

cdna chromosome:12X:8:21950870:21953960:1 gene:VIT_08s0007g08560 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cytoplasmic tRNA 2-thiolation protein 2 [Source:UniProtKB/TrEMBL;Acc:D7THW2]
Sequence

AAGTCGATAGGCGATCGCCATGGCCTGCGGCGCCGGAAATTGTCAGTCCGGTTGCTTCCG
GGACGACGACGACTCGGTCGTGACGGAGAAGAAGAAGTTAACCAATCGGACTCTTTCAAG
TGGCAGCGATATCGACCTTCCCAATCACCATAATCTCTGCCTCAAGTGCAAGGTGAACGA
GACCCTCGCCTCCTCCGGCACAGTCTCGGTCGACGGGGACATTGGCCGATTTTGCTTCGA
TTGCTTCCGCGGCAATCTATTCGGCAAGTTCAAACTCGCCGTCACCTCCAACGCTATGAT
TTCCCCAACGGATAACGTTCTTGTCGCCTTCTCCGGCGGTCCTTCTTCCAGGGTGGCGTT
GCAATTTGTACATGAGATGCAGCATAAAGCGCAGAAGAATTTTGACGCAAGTAGAGATAG
ATCATTACCTGTATTTGGTGTTGGCGTTGCTTTTGTCGATGAAAGTGCAGTTTCTCGGAT
TCCTTCCGATGAATTTGACAAAGCAATTCAAGATATGAAATCGATTGTTTCAAATTTAGC
TCCTCCAGATAAAGCCTTTCACGTTGTTCCCATTGAAAGTGTATACTCTTCAAATGGAAG
GGATAGATTGGAAGAGTTGCTGAATGCTGTTAAGGACGTAACAGGGAAGGAAGATCTTTT
GCAGCATCTGCGGATGTTGTCATTGCAAAAGAATGCTTATGAAAATGGGTATACCAAACT
TCTTTTGGGATCATGCACATCGAGGATTGCTTGCCATGTGATTTCTGCAACTGTGAAGGG
CCAAGGTTACTCCTTACCAGCAGATATACAATATGTTGATGCAAGGTGGGAGATCCCTGT
AGTGCTTCCACTTCGTGACTGTCTTGCACAAGAGCTGAACATGCTTTGTCGGCTTGATGG
TTTGAAGACCATGGAGGTGCTTAATAGTCCTCATTCTGGCATCAATGGCTTGGTTGCATC
GTTTGTTACACTTTTGCAGGAAGAGAACCCTTCTCGAGAATGCACGATAGTAAGAACAGC
TGGAAAGTTGACTCCATTTCATTTCAATCAGATTCCAGAAAGTGATGACTCTAATGTCCA
TTTGGCATCCCGACGGCGTCAAAAGAAATTCAATCTCAAGCCTAATGAATCTGTACCCCC
AGAGTCATATTGTCCTATCTGCAATAGCCCACTTAGCAAATCTGATCATATAAATTTGAG
CAGTCTTGGGAGTGATCAAACAAATGCTGATATTTTTGGGGCTACTTGTTGCCCAAGTTG
CCAGTTTCAGATACTTCCCAAAGAACCTGTGTCTATGGAGCATTTTTATTCCCTTCTTCC
CCAGCAGTTTGTTGTTCAAGCGAAGGACAGAAGCTTTAGTATGCAGAGACAGCTAAGGGA
GCAAATACAAGATTTCCTGCTATCCGATAGCGAAGATGGAACCTGAACTCAAAACTCTTA
AGGCTTGTCCCATTTCGGATGTAGGTTTTCTTCTACGTGGAAGCTTTCGAAAGATGGTGA
TACTTGCACCTACAACTGTTAGAAACATGTCGCATTTGGAGGCTTCCATTCTTGCAGATT
ATGTAGTGATTTT