Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_08s0007g08330.t01
CDS Infomation

cds chromosome:12X:8:21672950:21675646:1 gene:VIT_08s0007g08330 gene_biotype:protein_coding transcript_biotype:protein_coding description:Polygalacturonase PG1 [Source:UniProtKB/TrEMBL;Acc:Q94B15]
Sequence

ATGTCTCTACAAAGGCGCTTCGTTCCATGTCTCATTGTCTTTCTCCTTTCTTTCCCATGT
TACTTCAGTTTGCAAGCGAGCCCACCTTATGATTATCTTGGTGAGGCATCTGGCTATGAT
TCTCAGGCGAATCATTTGCATTTCAGCACCATTCAAAGCCGTGAGACTGAGAACTGGCCA
TGGCGCAAATTTGGAAGTAAAACGGGGAAATCTTTGGCTTCAGTTAAAATGGTTAACGTG
AATTATTATGGAGCTAAAGGTGATGGAAGTGATGCCACAGAGGCATTCAAGAAAGCTTGG
AAGGCAGCTTGTTCATCTCCAGGATCTGTCCTAGTGGTGCCCAAAAACAAGAACTATCTT
CTTAAGCCAATTACATTTCAAGGTCCTTGTAAATCCAGTATTACAGTGCAGATATATGGA
ACTGTCCAGGCATCTACTGATCGATCCGCCTACAGTAACGATATGACCCACTGGCTTATC
TTTGAAAATGTCCAAAATTTAGCGGTTCAAGGTGGTGGCACCATCAATGGAAATGGGAAG
ACGTGGTGGGAAAACTCTTGCAAAGTGAACTATGATCTTCCTTGCAAGGGTGCACCAACG
GCCTTAACCTTCTATAACTGCAAGAACTTGGCAGTGAAGAACCTCAAGATCCAAAATGCC
CAGCAAATGCATGTTTCTTTTGAAAAATGCGTGGGTGTTCAAGCTTCGGGTCTCACCATA
ACTGCACCGGGGAACAGTCCCAACACTGATGGAATCCATGTGAGTTACACCAAAATTATC
CAGATTTCAAGCTCGGTTATTGGAACAGGTGATGACTGTATTTCAATTGTGAGTGGATCC
CAGAAGGTGCAAGTCAATGGTATCACCTGTGGACCAGGCCATGGAATCAGCATTGGAAGC
TTAGGATCTGGAGATTCAGAGGCTCATGTTTCGGATGTTACAGTGAACGGCGCAACGCTT
TCGGGAACCACAAATGGAGTTAGAATCAAGACATGGCAGGGAGGGTCTGGAAGCGCAAGC
AACATCAAATTTCAGAACATTGTAATGCATAACGTGGAGAACCCTATAATAATAGACCAA
AAGTACTGTGACCAAAGCAAACCATGCAAGTCACAGAGCTCGGCTGTTCAAGTGCAAAAT
GTGTTGTACCAGAACATAAAAGGAACAAGTTCTTCGAAGGAGGCTATATCGCTTGATTGC
AGTGCGAAGTTTCCATGTCAAGGGATTCTGCTGCGAGACATTGATATAAAAGTTGGAGGA
GGAAAGGCAGCCAAAGCTGTATGCAGCAATGCCAGAGTGACTGTAATGGGGGATGTGTCT
CCAAATTGCGCCTGA

Peptide Sequence

PEP ID

VIT_08s0007g08330.t01
PEP Infomation

pep chromosome:12X:8:21672950:21675646:1 gene:VIT_08s0007g08330 transcript:VIT_08s0007g08330.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Polygalacturonase PG1 [Source:UniProtKB/TrEMBL;Acc:Q94B15]
Sequence

MSLQRRFVPCLIVFLLSFPCYFSLQASPPYDYLGEASGYDSQANHLHFSTIQSRETENWP
WRKFGSKTGKSLASVKMVNVNYYGAKGDGSDATEAFKKAWKAACSSPGSVLVVPKNKNYL
LKPITFQGPCKSSITVQIYGTVQASTDRSAYSNDMTHWLIFENVQNLAVQGGGTINGNGK
TWWENSCKVNYDLPCKGAPTALTFYNCKNLAVKNLKIQNAQQMHVSFEKCVGVQASGLTI
TAPGNSPNTDGIHVSYTKIIQISSSVIGTGDDCISIVSGSQKVQVNGITCGPGHGISIGS
LGSGDSEAHVSDVTVNGATLSGTTNGVRIKTWQGGSGSASNIKFQNIVMHNVENPIIIDQ
KYCDQSKPCKSQSSAVQVQNVLYQNIKGTSSSKEAISLDCSAKFPCQGILLRDIDIKVGG
GKAAKAVCSNARVTVMGDVSPNCA

Transcript Sequence

Transcript ID

VIT_08s0007g08330.t01
Transcript Infomation

cdna chromosome:12X:8:21672950:21675646:1 gene:VIT_08s0007g08330 gene_biotype:protein_coding transcript_biotype:protein_coding description:Polygalacturonase PG1 [Source:UniProtKB/TrEMBL;Acc:Q94B15]
Sequence

AATCATAGCTTCCATATATACTTTTCCGAATATTATCTCTCTCCTTTAGTAAAGAAGAAG
CAATGTCTCTACAAAGGCGCTTCGTTCCATGTCTCATTGTCTTTCTCCTTTCTTTCCCAT
GTTACTTCAGTTTGCAAGCGAGCCCACCTTATGATTATCTTGGTGAGGCATCTGGCTATG
ATTCTCAGGCGAATCATTTGCATTTCAGCACCATTCAAAGCCGTGAGACTGAGAACTGGC
CATGGCGCAAATTTGGAAGTAAAACGGGGAAATCTTTGGCTTCAGTTAAAATGGTTAACG
TGAATTATTATGGAGCTAAAGGTGATGGAAGTGATGCCACAGAGGCATTCAAGAAAGCTT
GGAAGGCAGCTTGTTCATCTCCAGGATCTGTCCTAGTGGTGCCCAAAAACAAGAACTATC
TTCTTAAGCCAATTACATTTCAAGGTCCTTGTAAATCCAGTATTACAGTGCAGATATATG
GAACTGTCCAGGCATCTACTGATCGATCCGCCTACAGTAACGATATGACCCACTGGCTTA
TCTTTGAAAATGTCCAAAATTTAGCGGTTCAAGGTGGTGGCACCATCAATGGAAATGGGA
AGACGTGGTGGGAAAACTCTTGCAAAGTGAACTATGATCTTCCTTGCAAGGGTGCACCAA
CGGCCTTAACCTTCTATAACTGCAAGAACTTGGCAGTGAAGAACCTCAAGATCCAAAATG
CCCAGCAAATGCATGTTTCTTTTGAAAAATGCGTGGGTGTTCAAGCTTCGGGTCTCACCA
TAACTGCACCGGGGAACAGTCCCAACACTGATGGAATCCATGTGAGTTACACCAAAATTA
TCCAGATTTCAAGCTCGGTTATTGGAACAGGTGATGACTGTATTTCAATTGTGAGTGGAT
CCCAGAAGGTGCAAGTCAATGGTATCACCTGTGGACCAGGCCATGGAATCAGCATTGGAA
GCTTAGGATCTGGAGATTCAGAGGCTCATGTTTCGGATGTTACAGTGAACGGCGCAACGC
TTTCGGGAACCACAAATGGAGTTAGAATCAAGACATGGCAGGGAGGGTCTGGAAGCGCAA
GCAACATCAAATTTCAGAACATTGTAATGCATAACGTGGAGAACCCTATAATAATAGACC
AAAAGTACTGTGACCAAAGCAAACCATGCAAGTCACAGAGCTCGGCTGTTCAAGTGCAAA
ATGTGTTGTACCAGAACATAAAAGGAACAAGTTCTTCGAAGGAGGCTATATCGCTTGATT
GCAGTGCGAAGTTTCCATGTCAAGGGATTCTGCTGCGAGACATTGATATAAAAGTTGGAG
GAGGAAAGGCAGCCAAAGCTGTATGCAGCAATGCCAGAGTGACTGTAATGGGGGATGTGT
CTCCAAATTGCGCCTGAGAAATGCATGGAAGCTAGGATTATTGGTTCTGAATCCTCTGAT
CACACACTTACATATATATATTTTTGTATATATGTATACAGTACTGAAAAATAATTATGA
GTTTGTCATATTTGTTTATCAAAGAATAAGGTCGAATAATACTAGAATGTAGCCAACACA
ATAATACTAATCTGATCATCTCTTATTG