Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_08s0007g06740.t01
CDS Infomation

cds chromosome:12X:8:20404886:20408769:1 gene:VIT_08s0007g06740 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:Q9XGC3]
Sequence

ATGGCTCCTGGAGGCAGCACTTACAAAGAAGTTCTTGAGTCTCACTCCACAGTGACTGAC
TATGACATAGCAATGACAAAAGCAGACACTAATCTTACACCTGCAAAAACTACTGCTGGC
TTGAGTGGAAAAAAGGGAATCTCTTCACCCAATGGTGTCCATGAGCTACTTGAATGTCCT
GTATGCACAAGTTTAATGTACCCTCCGATCTACCAGTGTCCAAGTGGCCACACCTTATGT
TCAAACTGCAAGAGTAGAGTGCACAACTGTTGCCCAACTTGCCGCCATGAGCTTGGAGAT
ATAAGGTGTTTGGCTTTGGAGAAAGTTGCAGAGTCATTAGAACTTCCCTGCAGATACCAA
AGTCTAGGTTGTCATGATATCTTTCCATACTACAGCAAGCTCAAGCACGAGCAACAGTGT
CGATTCCATCCATACAACTGCCCATATGCTGGGTTTGAGTGCTCTGTCACTGGGGACATC
CCAACCCTTGTTGAGCATCTCAAGGGTGATCACAAGGTTGACATGCACGATGGGTGTACC
TTCAACCATCGATATGTCAAATCAAATCCTCAGGAAGTTGAAAATGCCACATGGATGCTA
ACTGTGTTCAACTGTTTTGGGAAGCAATTCTGCTTGCATTTTGAGGCTTTCCAGCTTGGA
ACAGCACCAGTCTACATGGCCTTTCTGCGATTCATGGGTGATGACAATGAAGCAAAGAAG
TTCAGCTACAGTTTGGAAGTCGGTGGCAACAGCCGCAAGCTAATATGGCAGGGAGTTCCA
AGAAGTATCAGGGACAGTCATAGGAAAGTTCGCGACAGTCAGGATGGACTCATCATTCAA
AGGAACTTGGCTCTCTACTTCTCTGGAGGTGATCGGCAAGAGCTGAAGCTGAGGGTCACC
GGCCGAATTTGGAAAGAAAGTGAATTATGGAAAGACAATGGATGTTAG

Peptide Sequence

PEP ID

VIT_08s0007g06740.t01
PEP Infomation

pep chromosome:12X:8:20404886:20408769:1 gene:VIT_08s0007g06740 transcript:VIT_08s0007g06740.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:Q9XGC3]
Sequence

MAPGGSTYKEVLESHSTVTDYDIAMTKADTNLTPAKTTAGLSGKKGISSPNGVHELLECP
VCTSLMYPPIYQCPSGHTLCSNCKSRVHNCCPTCRHELGDIRCLALEKVAESLELPCRYQ
SLGCHDIFPYYSKLKHEQQCRFHPYNCPYAGFECSVTGDIPTLVEHLKGDHKVDMHDGCT
FNHRYVKSNPQEVENATWMLTVFNCFGKQFCLHFEAFQLGTAPVYMAFLRFMGDDNEAKK
FSYSLEVGGNSRKLIWQGVPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGDRQELKLRVT
GRIWKESELWKDNGC

Transcript Sequence

Transcript ID

VIT_08s0007g06740.t01
Transcript Infomation

cdna chromosome:12X:8:20404886:20408769:1 gene:VIT_08s0007g06740 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:Q9XGC3]
Sequence

GAAGAACATAAATTGTATTAAAGACGACACAGAAGTGAAAAGTATATTTTAAAAGAACAG
AAAACAAAAAAGAAAAGAAAAGAAAAGAAAATTTGTAGATCGTGGGAAAAAGGACAAGGG
CATCAACGGATGCGAACGGTACAAACAAGGGAACTTTTCTTCAATTTCCATATCCGGGTA
AATACGCGTGAATTTCGGAGCTCGCGGCACGAGTTGTTTTTTGTGTTCGTTTTTGTTTTT
TCTCCCTTAATTTTCGAGGGAAGATCGGGATTTGTAGTTGGAGTTGATTGTTTATGGGGA
CACTGTGCTTGGAAATCTCAACTGACTAAGGATGCTAATCGACTATGGAGAATGATTCAA
ACTGGGGAATGATTACTGCTGTGAATCTTAGTCACTGCTACCAATATTATTGAGTTATAA
GCTTATCAATGGCTCCTGGAGGCAGCACTTACAAAGAAGTTCTTGAGTCTCACTCCACAG
TGACTGACTATGACATAGCAATGACAAAAGCAGACACTAATCTTACACCTGCAAAAACTA
CTGCTGGCTTGAGTGGAAAAAAGGGAATCTCTTCACCCAATGGTGTCCATGAGCTACTTG
AATGTCCTGTATGCACAAGTTTAATGTACCCTCCGATCTACCAGTGTCCAAGTGGCCACA
CCTTATGTTCAAACTGCAAGAGTAGAGTGCACAACTGTTGCCCAACTTGCCGCCATGAGC
TTGGAGATATAAGGTGTTTGGCTTTGGAGAAAGTTGCAGAGTCATTAGAACTTCCCTGCA
GATACCAAAGTCTAGGTTGTCATGATATCTTTCCATACTACAGCAAGCTCAAGCACGAGC
AACAGTGTCGATTCCATCCATACAACTGCCCATATGCTGGGTTTGAGTGCTCTGTCACTG
GGGACATCCCAACCCTTGTTGAGCATCTCAAGGGTGATCACAAGGTTGACATGCACGATG
GGTGTACCTTCAACCATCGATATGTCAAATCAAATCCTCAGGAAGTTGAAAATGCCACAT
GGATGCTAACTGTGTTCAACTGTTTTGGGAAGCAATTCTGCTTGCATTTTGAGGCTTTCC
AGCTTGGAACAGCACCAGTCTACATGGCCTTTCTGCGATTCATGGGTGATGACAATGAAG
CAAAGAAGTTCAGCTACAGTTTGGAAGTCGGTGGCAACAGCCGCAAGCTAATATGGCAGG
GAGTTCCAAGAAGTATCAGGGACAGTCATAGGAAAGTTCGCGACAGTCAGGATGGACTCA
TCATTCAAAGGAACTTGGCTCTCTACTTCTCTGGAGGTGATCGGCAAGAGCTGAAGCTGA
GGGTCACCGGCCGAATTTGGAAAGAAAGTGAATTATGGAAAGACAATGGATGTTAGGGTG
AATGTACATTATCCAAAAGGTTCTAAGACCCCACTGGGGGCTGCTTCAATATGGCAAATG
AATGAAGTTTGATACATTGTTATTGGGGTTGGTTTCTTCTTTTTGTGTTGAAGTTGTAAT
TCTGATGGGGGTTTGGAGTCTCTTTACAAACTGAATCAA