Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_08s0007g04950.t01
CDS Infomation

cds chromosome:12X:8:18894227:18895601:-1 gene:VIT_08s0007g04950 gene_biotype:protein_coding transcript_biotype:protein_coding description:Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:F6HKC0]
Sequence

ATGGCTTTCTTTATCTTCCTGGTTCTCGTCCTCATGGTTCCTTCAAGTAATGCCCAGTGG
CCACCTTCACCTGGCTACTACCCCAGCAGAAAATTTAGGTCTATGAGCTTTTATCAAGGG
TTTAGAAATCTCTGGGGTCCTCAGCACCAAAGAGTAGACCAAAATGCATTGACAATATGG
CTTGACAGTACCTCAGGTAGCGGATTCAAGTCCGTTCGCCCCTTCCGATCGGGCTACTTT
GGTGCGTCCATCAAGCTCCAACCTGGTTACACTGCAGGCGTGATCACAGCTTTTTATCTC
TCCAACAACGAAGCCCATCCGGGGTTTCATGATGAAGTGGATATCGAGTTCCTTGGAACC
ACATTCGGGAAGCCTTATACCTTACAAACCAATGTTTACATCAGAGGAAGTGGTGATGGC
CGCATCATAGGCAGAGAGATGAAATTTCATCTATGGTTTGATCCCACCAAAGATTTCCAT
CACTATGCTATTCTCTGGAGTCCAAAGGATATCATATTTTTCGTGGATGATGTGCCCGTA
AGGAGGTACCCGAGGAAGAGCGCCACCACATTTCCCCTAAGGCCAATGTGGCTGTATGGT
TCCATATGGGACGCCTCATCATGGGCCACCGAAGATGGAAAATACAAAGCCGATTACCGG
TACCAGCCCTTTGTTGGGCAGTACAGTAACTTCAAAGCCAGCGGGTGCTCTGCCTATTCT
CCGGCGTCGTGCCGACCGGTATCGGCGTCTCCGTACCGGTCGGGGCGGCTGACCGGGCAA
CAGTACAGAGCTATGCAATGGGTCCAAAGTCGCCACATGGTCTACAACTACTGCTCGGAC
AACAAGAGGGACCATTCCCTCACACCTGAGTGTTGGGGTTAA

Peptide Sequence

PEP ID

VIT_08s0007g04950.t01
PEP Infomation

pep chromosome:12X:8:18894227:18895601:-1 gene:VIT_08s0007g04950 transcript:VIT_08s0007g04950.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:F6HKC0]
Sequence

MAFFIFLVLVLMVPSSNAQWPPSPGYYPSRKFRSMSFYQGFRNLWGPQHQRVDQNALTIW
LDSTSGSGFKSVRPFRSGYFGASIKLQPGYTAGVITAFYLSNNEAHPGFHDEVDIEFLGT
TFGKPYTLQTNVYIRGSGDGRIIGREMKFHLWFDPTKDFHHYAILWSPKDIIFFVDDVPV
RRYPRKSATTFPLRPMWLYGSIWDASSWATEDGKYKADYRYQPFVGQYSNFKASGCSAYS
PASCRPVSASPYRSGRLTGQQYRAMQWVQSRHMVYNYCSDNKRDHSLTPECWG

Transcript Sequence

Transcript ID

VIT_08s0007g04950.t01
Transcript Infomation

cdna chromosome:12X:8:18894227:18895601:-1 gene:VIT_08s0007g04950 gene_biotype:protein_coding transcript_biotype:protein_coding description:Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:F6HKC0]
Sequence

CTGCCTTCTCTACACACTCACCCTCTCCTCTCTCCTCCCTCCTCAGCTTTCTTCCACCCT
TGATCATGGCTTTCTTTATCTTCCTGGTTCTCGTCCTCATGGTTCCTTCAAGTAATGCCC
AGTGGCCACCTTCACCTGGCTACTACCCCAGCAGAAAATTTAGGTCTATGAGCTTTTATC
AAGGGTTTAGAAATCTCTGGGGTCCTCAGCACCAAAGAGTAGACCAAAATGCATTGACAA
TATGGCTTGACAGTACCTCAGGTAGCGGATTCAAGTCCGTTCGCCCCTTCCGATCGGGCT
ACTTTGGTGCGTCCATCAAGCTCCAACCTGGTTACACTGCAGGCGTGATCACAGCTTTTT
ATCTCTCCAACAACGAAGCCCATCCGGGGTTTCATGATGAAGTGGATATCGAGTTCCTTG
GAACCACATTCGGGAAGCCTTATACCTTACAAACCAATGTTTACATCAGAGGAAGTGGTG
ATGGCCGCATCATAGGCAGAGAGATGAAATTTCATCTATGGTTTGATCCCACCAAAGATT
TCCATCACTATGCTATTCTCTGGAGTCCAAAGGATATCATATTTTTCGTGGATGATGTGC
CCGTAAGGAGGTACCCGAGGAAGAGCGCCACCACATTTCCCCTAAGGCCAATGTGGCTGT
ATGGTTCCATATGGGACGCCTCATCATGGGCCACCGAAGATGGAAAATACAAAGCCGATT
ACCGGTACCAGCCCTTTGTTGGGCAGTACAGTAACTTCAAAGCCAGCGGGTGCTCTGCCT
ATTCTCCGGCGTCGTGCCGACCGGTATCGGCGTCTCCGTACCGGTCGGGGCGGCTGACCG
GGCAACAGTACAGAGCTATGCAATGGGTCCAAAGTCGCCACATGGTCTACAACTACTGCT
CGGACAACAAGAGGGACCATTCCCTCACACCTGAGTGTTGGGGTTAAA