Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_08s0007g04380.t01
CDS Infomation

cds chromosome:12X:8:18326470:18334168:-1 gene:VIT_08s0007g04380 gene_biotype:protein_coding transcript_biotype:protein_coding description:Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:D7TIX4]
Sequence

ATGGCGGTTCCTCCGACCGTCCCTGCCGCTCCGGCTTCGCTCTACGTTGGTGACCTGCAC
CCTGATATCACCGATGGCCTGCTTTTCGACGCCTTCTCCGAATTTAAAAGCCTCGCCTCT
GTGCGCATCTGCCGTGACTCCTCCTCTGGCCGTTCCCTCTGTTACGGTTACGTCAACTTC
ATCTCTCCTCAAGACGCTTCTCATGCCATTGAGGCAAAGAATCACACTATGCTGCATGGA
AAAGTGATAAGAGTTATGTGGTCACATCGTGATCCAGATGCAAGAAGGAGTGGAATAGGG
AATGTGTTTGTTAAGAATTTGAGTGACTCAATAGATAATGTGAGGCTTCAAGCCATGTTT
CAGAAATTTGGCAATATTTTGTCTTGTAAAGTGGTTGTGACTGAGGATGGGAAGAGCAAA
GGATATGGTTTCGTTCAGTTTGAGTCTGAGGAATATGCAAATGCTGCCATTGAGAAGCTA
AATGGCTTCATTATTGACGGCAAACAGATATATGCTGGGAAGTTTGTCAGAAAGACTGAT
AGGGTTCTGCCCAATCCTGATGCCAAATATACAAATCTTTACATCAAGAATTTGGATCCA
GATGTCACAGAAGAAGCTCTACGAGAGAAGTTCTTTGAGTTTGGGAAAATTGCTAGCTTG
GTTATTTCTAAGGATGAAAATGGGATGTCCAGAGGTTTTGGTTTTGTGAACTTTGAGAGC
CCGGAAGATGCCAAACGAGCACTGGAAGCATTAAATGGATTGCAACTTGGTTCGAAGGTT
CTGTATGTAGCAAGGGCACAGAAGAAAGCCGAACGTGAGCAGCTTTTGCGTCGCCAATTT
GAGGAGAAACGTAACGAGCAAATCTTAAAATACAGGGGTTCAAATGTGTATGTCAAGAAC
ATTGATGATAATGTCAATGATGATGACCTGCGGGAACACTTTAGTGTGTGCGGCAAGATC
ACTTCTGCAAAACTCATGCGAGATCAAAAAGGGATAAGCAAGGGGTTTGGATTTGTCTGC
TTCTCCACTCCTGATGAGGCCAGTAAAGCTGTGAACACTTTTCATGGGTACATGTTTCAC
AGAAAGCCATTGTATGTGGCTATTGCTCAAAGGAAAGAGGACAGGCAAGCACAACTGCAG
CTTCATTATGCACAACGTATGGCAGGACTTGCAGGACCTTCTACTCCTGTTATCCCTGGT
GGATATCCTCCTCTGTACTACACAGCTCCTCCTGGTGTTATACCTCCAAGACAGGGCCTG
ATGTATCAGCCTTTGGGTTTGCGCACAGGATGGAGAGCTAACAACCTTATACCTCCAACC
AGACCAGCTTTTCAGCCATCATCAATTCCCTTGATGCCTAATACTCCAAGGCAGCACAGG
CAAAACAGGGGCAGGACAAATGGGCATATTCCACAGGGTGGTGGTCACTCTACTGCATTT
ATGCCACATTTGCAGCAGCCAACTCAACCAGTGATTTCACCAAAAGATTCAATCAATCAG
CAGCGGGCTGGGCAGGCTAAGTATGTGCCAAATGGCCGTTCCTATGAGATGAGCAAAGGA
TCTGGAATCCCATCTGCTGCTTCCAATTCTGTTGGAACTGGATCTCAAGGATCGGAGATG
CTGAGTAGCATGCTTGCTGCTGCTTCTCCTGAGCAGCAGAAGCAGATTCTGGGCGAGCAT
CTCTATCCCCTTGTCCAGAAACAAAAGCCTGATCTTGCTGCAAAGATAACGGGAATGCTT
TTGGAGATGGACAACTCGGAACTGCTCCTGTTATTGGAATCCCCTGAGTCATTGGCTGCC
AAAGTGGAAGAAGCTGTGCAGGTGCTCAAGCTCTCCAAATCTAAACCATCTGGACAGGAC
ACACTTCATCCTAGTTACCTGGCTGCTGAGGTTGCGGTTAACTGA

Peptide Sequence

PEP ID

VIT_08s0007g04380.t01
PEP Infomation

pep chromosome:12X:8:18326470:18334168:-1 gene:VIT_08s0007g04380 transcript:VIT_08s0007g04380.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:D7TIX4]
Sequence

MAVPPTVPAAPASLYVGDLHPDITDGLLFDAFSEFKSLASVRICRDSSSGRSLCYGYVNF
ISPQDASHAIEAKNHTMLHGKVIRVMWSHRDPDARRSGIGNVFVKNLSDSIDNVRLQAMF
QKFGNILSCKVVVTEDGKSKGYGFVQFESEEYANAAIEKLNGFIIDGKQIYAGKFVRKTD
RVLPNPDAKYTNLYIKNLDPDVTEEALREKFFEFGKIASLVISKDENGMSRGFGFVNFES
PEDAKRALEALNGLQLGSKVLYVARAQKKAEREQLLRRQFEEKRNEQILKYRGSNVYVKN
IDDNVNDDDLREHFSVCGKITSAKLMRDQKGISKGFGFVCFSTPDEASKAVNTFHGYMFH
RKPLYVAIAQRKEDRQAQLQLHYAQRMAGLAGPSTPVIPGGYPPLYYTAPPGVIPPRQGL
MYQPLGLRTGWRANNLIPPTRPAFQPSSIPLMPNTPRQHRQNRGRTNGHIPQGGGHSTAF
MPHLQQPTQPVISPKDSINQQRAGQAKYVPNGRSYEMSKGSGIPSAASNSVGTGSQGSEM
LSSMLAAASPEQQKQILGEHLYPLVQKQKPDLAAKITGMLLEMDNSELLLLLESPESLAA
KVEEAVQVLKLSKSKPSGQDTLHPSYLAAEVAVN

Transcript Sequence

Transcript ID

VIT_08s0007g04380.t01
Transcript Infomation

cdna chromosome:12X:8:18326470:18334168:-1 gene:VIT_08s0007g04380 gene_biotype:protein_coding transcript_biotype:protein_coding description:Polyadenylate-binding protein [Source:UniProtKB/TrEMBL;Acc:D7TIX4]
Sequence

ATGGCGGTTCCTCCGACCGTCCCTGCCGCTCCGGCTTCGCTCTACGTTGGTGACCTGCAC
CCTGATATCACCGATGGCCTGCTTTTCGACGCCTTCTCCGAATTTAAAAGCCTCGCCTCT
GTGCGCATCTGCCGTGACTCCTCCTCTGGCCGTTCCCTCTGTTACGGTTACGTCAACTTC
ATCTCTCCTCAAGACGCTTCTCATGCCATTGAGGCAAAGAATCACACTATGCTGCATGGA
AAAGTGATAAGAGTTATGTGGTCACATCGTGATCCAGATGCAAGAAGGAGTGGAATAGGG
AATGTGTTTGTTAAGAATTTGAGTGACTCAATAGATAATGTGAGGCTTCAAGCCATGTTT
CAGAAATTTGGCAATATTTTGTCTTGTAAAGTGGTTGTGACTGAGGATGGGAAGAGCAAA
GGATATGGTTTCGTTCAGTTTGAGTCTGAGGAATATGCAAATGCTGCCATTGAGAAGCTA
AATGGCTTCATTATTGACGGCAAACAGATATATGCTGGGAAGTTTGTCAGAAAGACTGAT
AGGGTTCTGCCCAATCCTGATGCCAAATATACAAATCTTTACATCAAGAATTTGGATCCA
GATGTCACAGAAGAAGCTCTACGAGAGAAGTTCTTTGAGTTTGGGAAAATTGCTAGCTTG
GTTATTTCTAAGGATGAAAATGGGATGTCCAGAGGTTTTGGTTTTGTGAACTTTGAGAGC
CCGGAAGATGCCAAACGAGCACTGGAAGCATTAAATGGATTGCAACTTGGTTCGAAGGTT
CTGTATGTAGCAAGGGCACAGAAGAAAGCCGAACGTGAGCAGCTTTTGCGTCGCCAATTT
GAGGAGAAACGTAACGAGCAAATCTTAAAATACAGGGGTTCAAATGTGTATGTCAAGAAC
ATTGATGATAATGTCAATGATGATGACCTGCGGGAACACTTTAGTGTGTGCGGCAAGATC
ACTTCTGCAAAACTCATGCGAGATCAAAAAGGGATAAGCAAGGGGTTTGGATTTGTCTGC
TTCTCCACTCCTGATGAGGCCAGTAAAGCTGTGAACACTTTTCATGGGTACATGTTTCAC
AGAAAGCCATTGTATGTGGCTATTGCTCAAAGGAAAGAGGACAGGCAAGCACAACTGCAG
CTTCATTATGCACAACGTATGGCAGGACTTGCAGGACCTTCTACTCCTGTTATCCCTGGT
GGATATCCTCCTCTGTACTACACAGCTCCTCCTGGTGTTATACCTCCAAGACAGGGCCTG
ATGTATCAGCCTTTGGGTTTGCGCACAGGATGGAGAGCTAACAACCTTATACCTCCAACC
AGACCAGCTTTTCAGCCATCATCAATTCCCTTGATGCCTAATACTCCAAGGCAGCACAGG
CAAAACAGGGGCAGGACAAATGGGCATATTCCACAGGGTGGTGGTCACTCTACTGCATTT
ATGCCACATTTGCAGCAGCCAACTCAACCAGTGATTTCACCAAAAGATTCAATCAATCAG
CAGCGGGCTGGGCAGGCTAAGTATGTGCCAAATGGCCGTTCCTATGAGATGAGCAAAGGA
TCTGGAATCCCATCTGCTGCTTCCAATTCTGTTGGAACTGGATCTCAAGGATCGGAGATG
CTGAGTAGCATGCTTGCTGCTGCTTCTCCTGAGCAGCAGAAGCAGATTCTGGGCGAGCAT
CTCTATCCCCTTGTCCAGAAACAAAAGCCTGATCTTGCTGCAAAGATAACGGGAATGCTT
TTGGAGATGGACAACTCGGAACTGCTCCTGTTATTGGAATCCCCTGAGTCATTGGCTGCC
AAAGTGGAAGAAGCTGTGCAGGTGCTCAAGCTCTCCAAATCTAAACCATCTGGACAGGAC
ACACTTCATCCTAGTTACCTGGCTGCTGAGGTTGCGGTTAACTGAAAAGGCTTTTGTGCC
CAACAATTTTCCACTTTTTGAAAGTTTGGAGATTATGGTTGGGCTGGAACTCCGAGTGAG
CGATATTTTTGATAGTCTGTATTGGTGGACCTTCTTAATTTCTGGCTTTTAACAATTTTC
CACTTTAGTCTTTACAGTATAGAATATTTGACATTTGAAGAACACATCTATCTATCTATC
TTATCTGAACTGTTAGTTGAAGATA