Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_08s0007g01960.t01
CDS Infomation

cds chromosome:12X:8:16022144:16030163:-1 gene:VIT_08s0007g01960 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase [Source:UniProtKB/TrEMBL;Acc:D7THA3]
Sequence

ATGGGCAAAGCTTCAAGGGATAAGAGGGATATCTACTATCGTAAAGCAAAGGAAGAAGGT
TGGCGTGCTCGAAGTGCCTTCAAACTCCTTCAGATTGATGAGGAATTCAACATATTTGAA
GGGGTCAAGCGTGTGGTAGATCTATGTGCAGCCCCTGGTAGCTGGAGTCAGGTTTTGAGT
CGTAAGTTGTTTCTCCCAGCAAAGCTTTCACCTGCCTCAAGGGATGGTGATCTTCCTCTT
ATTGTGGCGATTGATTTGCAGCCCATGGCTCCAATTGAAGGGGTGATTCAAGTCCAGGGT
GATATAACAAATGCTCGTACAGCTGAACTGGTCATTAGGCATTTTGATGGATGCAAGGCT
GACCTGGTTGTGTGTGATGGTGCTCCTGATGTTACCGGGCTTCATGATATGGATGAATTT
GTCCAGTCCCAACTTATTCTTGCGGGTTTAACAATTGTTACTCATGTGCTTAAAAAAGGT
GGAAAATTTATTGCAAAGATATTTCGGGGAAAAGATACTAGTCTCCTTTATTGCCAGCTG
AAATTATTCTTCCCTATAGTAACTTTTGCAAAACCGAAAAGCAGCCGTAATTCCAGCATA
GAGGCATTTGCAGTTTGTGAAAATTATTCTCCTCCTGAAGGATTTAATGAGAAAGATTTG
CATCGCCTTCTAGAAAAGGTGGGAAGTCCATCAGGAGCAGATGATCTAGATTGCAGAAGC
GGGTGGTTGGAAGGGCCAAATAAGGTGTACATTCCATTTTTGGCTTGTGGAGACCTCAGT
GGGTATGACTCAGACCAGTCATATCCTCTTCCCAAAGTTGCTGAAGGAACTTACCAGAGC
TTGGATCCTGTACAGCCCCCAATTGCTCCTCCTTATAAGAGAGCTCTAGAACTAAAGAAA
GCTTCCAGTCATGGAATTCGAGAGCTAGAAAGGCTCTCCCTGGATTCTTGA

Peptide Sequence

PEP ID

VIT_08s0007g01960.t01
PEP Infomation

pep chromosome:12X:8:16022144:16030163:-1 gene:VIT_08s0007g01960 transcript:VIT_08s0007g01960.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase [Source:UniProtKB/TrEMBL;Acc:D7THA3]
Sequence

MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS
RKLFLPAKLSPASRDGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAELVIRHFDGCKA
DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIVTHVLKKGGKFIAKIFRGKDTSLLYCQL
KLFFPIVTFAKPKSSRNSSIEAFAVCENYSPPEGFNEKDLHRLLEKVGSPSGADDLDCRS
GWLEGPNKVYIPFLACGDLSGYDSDQSYPLPKVAEGTYQSLDPVQPPIAPPYKRALELKK
ASSHGIRELERLSLDS

Transcript Sequence

Transcript ID

VIT_08s0007g01960.t01
Transcript Infomation

cdna chromosome:12X:8:16022144:16030163:-1 gene:VIT_08s0007g01960 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase [Source:UniProtKB/TrEMBL;Acc:D7THA3]
Sequence

TTAAAGCATGGGCAAAGCTTCAAGGGATAAGAGGGATATCTACTATCGTAAAGCAAAGGA
AGAAGGTTGGCGTGCTCGAAGTGCCTTCAAACTCCTTCAGATTGATGAGGAATTCAACAT
ATTTGAAGGGGTCAAGCGTGTGGTAGATCTATGTGCAGCCCCTGGTAGCTGGAGTCAGGT
TTTGAGTCGTAAGTTGTTTCTCCCAGCAAAGCTTTCACCTGCCTCAAGGGATGGTGATCT
TCCTCTTATTGTGGCGATTGATTTGCAGCCCATGGCTCCAATTGAAGGGGTGATTCAAGT
CCAGGGTGATATAACAAATGCTCGTACAGCTGAACTGGTCATTAGGCATTTTGATGGATG
CAAGGCTGACCTGGTTGTGTGTGATGGTGCTCCTGATGTTACCGGGCTTCATGATATGGA
TGAATTTGTCCAGTCCCAACTTATTCTTGCGGGTTTAACAATTGTTACTCATGTGCTTAA
AAAAGGTGGAAAATTTATTGCAAAGATATTTCGGGGAAAAGATACTAGTCTCCTTTATTG
CCAGCTGAAATTATTCTTCCCTATAGTAACTTTTGCAAAACCGAAAAGCAGCCGTAATTC
CAGCATAGAGGCATTTGCAGTTTGTGAAAATTATTCTCCTCCTGAAGGATTTAATGAGAA
AGATTTGCATCGCCTTCTAGAAAAGGTGGGAAGTCCATCAGGAGCAGATGATCTAGATTG
CAGAAGCGGGTGGTTGGAAGGGCCAAATAAGGTGTACATTCCATTTTTGGCTTGTGGAGA
CCTCAGTGGGTATGACTCAGACCAGTCATATCCTCTTCCCAAAGTTGCTGAAGGAACTTA
CCAGAGCTTGGATCCTGTACAGCCCCCAATTGCTCCTCCTTATAAGAGAGCTCTAGAACT
AAAGAAAGCTTCCAGTCATGGAATTCGAGAGCTAGAAAGGCTCTCCCTGGATTCTTGATT
TTATATTTATTACTTCCACATAGTCATCCATTCATAAAAGTATTGGAATGTGGTGAAGTT
GGTAACTG