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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_06s0080g00840.t01
CDS Infomation

cds chromosome:12X:6:20863401:20864440:1 gene:VIT_06s0080g00840 gene_biotype:protein_coding transcript_biotype:protein_coding description:Casparian strip membrane protein 2 [Source:UniProtKB/Swiss-Prot;Acc:A7QF77]
Sequence

ATGAAGAGCACTGGTGAAGCAACAGCTATCAACATTGGGGAGACCAAGTCTGCTTCTGCT
ACTACCGTGGCCACCACAAAAGCTATCCAACATCCAAAAGCAGGATTGAAGAGAGGTCTT
GCCATTTTCGACTTCATTCTCCGGCTCTCTGCCATTGGGGCTGCTTTGGCTGCCACTACC
ACTATGGGCACTACTGACCAGACTCTCCCTTTCTTTACTCAGTTCTTCCAGTTCCAAGCT
AGCTACGATGATCTTCCCGCTTTCTCGTTTTTCGTGATTGCAAATGCTATAGCTAGTGGA
TACCTCTTCCTGTCCTTGCCCTTTTCCATAGTCTGCATCGTTCGGCCGCATGCCATGGGA
GCAAGGCTCCTCCTAGTCATCTGTGACACTGTCATGGTTGCTCTCACCATAGCTGCTGCT
GCCGCTGCTGCTGCCATAGTCTACTTAGCTCATAACGGGAATTCAAACGCCAACTGGGTG
GCCATTTGTCAGCAATTCGATGACTTCTGCCAGAGTGTCAGTGGGGCCGTTGTGGCTTCC
TTCATTGCAGCAGTCCTCTTCATGTTGATGATTGTCCTCTCAGCTTTCTCTCTGCGAAAG
CATTGA

Peptide Sequence

PEP ID

VIT_06s0080g00840.t01
PEP Infomation

pep chromosome:12X:6:20863401:20864440:1 gene:VIT_06s0080g00840 transcript:VIT_06s0080g00840.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Casparian strip membrane protein 2 [Source:UniProtKB/Swiss-Prot;Acc:A7QF77]
Sequence

MKSTGEATAINIGETKSASATTVATTKAIQHPKAGLKRGLAIFDFILRLSAIGAALAATT
TMGTTDQTLPFFTQFFQFQASYDDLPAFSFFVIANAIASGYLFLSLPFSIVCIVRPHAMG
ARLLLVICDTVMVALTIAAAAAAAAIVYLAHNGNSNANWVAICQQFDDFCQSVSGAVVAS
FIAAVLFMLMIVLSAFSLRKH

Transcript Sequence

Transcript ID

VIT_06s0080g00840.t01
Transcript Infomation

cdna chromosome:12X:6:20863401:20864440:1 gene:VIT_06s0080g00840 gene_biotype:protein_coding transcript_biotype:protein_coding description:Casparian strip membrane protein 2 [Source:UniProtKB/Swiss-Prot;Acc:A7QF77]
Sequence

CAAAATTAACGGCATCCATCAATACCTCTAAGGACAAAATGAAGAGCACTGGTGAAGCAA
CAGCTATCAACATTGGGGAGACCAAGTCTGCTTCTGCTACTACCGTGGCCACCACAAAAG
CTATCCAACATCCAAAAGCAGGATTGAAGAGAGGTCTTGCCATTTTCGACTTCATTCTCC
GGCTCTCTGCCATTGGGGCTGCTTTGGCTGCCACTACCACTATGGGCACTACTGACCAGA
CTCTCCCTTTCTTTACTCAGTTCTTCCAGTTCCAAGCTAGCTACGATGATCTTCCCGCTT
TCTCGTTTTTCGTGATTGCAAATGCTATAGCTAGTGGATACCTCTTCCTGTCCTTGCCCT
TTTCCATAGTCTGCATCGTTCGGCCGCATGCCATGGGAGCAAGGCTCCTCCTAGTCATCT
GTGACACTGTCATGGTTGCTCTCACCATAGCTGCTGCTGCCGCTGCTGCTGCCATAGTCT
ACTTAGCTCATAACGGGAATTCAAACGCCAACTGGGTGGCCATTTGTCAGCAATTCGATG
ACTTCTGCCAGAGTGTCAGTGGGGCCGTTGTGGCTTCCTTCATTGCAGCAGTCCTCTTCA
TGTTGATGATTGTCCTCTCAGCTTTCTCTCTGCGAAAGCATTGAGATTATTTGACAATGG
ACTATTTTCTCAGAGCTGAATCTGATATATTACCAACCTATATATAGTCTTTTAATTTAC
ACGTAAACTTCTCATTAAACTTGTGAGTTTGGGTTGGGGCATGGTGGTGAATTGCAGTGT
TGAAGCCAATGTTATGTTTAAGTTGGTTTGATGTATTTGGTGAATGTAATGAAATTAAGT
GGTTTA