Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_06s0004g07840.t01
CDS Infomation

cds chromosome:12X:6:8609416:8611495:-1 gene:VIT_06s0004g07840 gene_biotype:protein_coding transcript_biotype:protein_coding description:Structure-specific endonuclease subunit SLX1 homolog [Source:UniProtKB/TrEMBL;Acc:F6GUC5]
Sequence

ATGACGAAGAGAAAGGGGCGATCAGAAATCTCAGAAGAAACCCTAAATTCAGAGGAGAAA
GGCGATGATTTCTTTGCCTGCTATCTACTGGCTTCCCTCAGCCCCAGGCACAAAGGCCAC
TCCTATATCGGATTTACAGTTAATCCAAGGCGTAGAATCAGGCAACACAACGGTGAAATA
ACGTGTGGAGCATGGAAAACCAAGAGGAAGCGCCCTTGGGAAATGGTTCTATGTATTTAT
GGTTTCCCAACAAATGTTTCTGCTCTTCAGTTTGAATGGGCGTGGCAGCACCCAACAGAG
TCACTAGCCGTCAGAAAGGCAGCTGCAGGTTTCAAATCCCTTTCTGGGATTGCCAATAAG
ATCAAACTCGCGTACACCATGTTCACCCTCCCAGCATGGCAGAGCTTGAACCTCACAGTG
AACTTTTTCTCAACAAAGTATACAAAGCATTCTGCTGGTTGCCCAATCTTGCCAGAGCAC
ATGAGGGTGCAAGTTTCTCCCATGGATGAGCTTCCATGCTATTCAGGAAGTGATCAGAGT
TTCTTTGACAATGCCAGGGGCGATGAGAAAGAAGAACTTGGTGAAAGAGGCAGCAGCAGT
GATGGATTTGATCAAGTAATAGCCCATGAGGAGACTGCTCTGGAGCAGTTTGGATGGATT
GAAGAACATGGCTTGAGACAACCAGGGGACTCACCCTCTCCAGAAGTAGTTCATTGTTCT
GGAAAGACCCAAGAAAACGCCATGAGACAACCTGCAGACTTGTCCACTTCAAAAGATGAA
CATAGATCGCCATTTTGTCTCATTGATTCCCCAGTGAGAACATCTTCTCATAGCACAGAA
GGAACTCTTGATAAAGATACCTCTGGATTGAGCAAAGAAAATAAAGTTCTGACAATGAAA
CAATTGCCAGCTACAGTAGCCGCTGATAGAGGTAAACCAAAAATCAGCAGTCTCGATACC
TCTTGTGAAATTGAGGTTATAGATCTATTGAGCTGCTCACCTGACTACAGAACTAACCCA
TGTTTCAAGAAGAGAAGAGCTACTACTGTCCATCCTGAGATCATTGACTTGACCAATTCA
CCCATTTTTGTGTAG

Peptide Sequence

PEP ID

VIT_06s0004g07840.t01
PEP Infomation

pep chromosome:12X:6:8609416:8611495:-1 gene:VIT_06s0004g07840 transcript:VIT_06s0004g07840.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Structure-specific endonuclease subunit SLX1 homolog [Source:UniProtKB/TrEMBL;Acc:F6GUC5]
Sequence

MTKRKGRSEISEETLNSEEKGDDFFACYLLASLSPRHKGHSYIGFTVNPRRRIRQHNGEI
TCGAWKTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPTESLAVRKAAAGFKSLSGIANK
IKLAYTMFTLPAWQSLNLTVNFFSTKYTKHSAGCPILPEHMRVQVSPMDELPCYSGSDQS
FFDNARGDEKEELGERGSSSDGFDQVIAHEETALEQFGWIEEHGLRQPGDSPSPEVVHCS
GKTQENAMRQPADLSTSKDEHRSPFCLIDSPVRTSSHSTEGTLDKDTSGLSKENKVLTMK
QLPATVAADRGKPKISSLDTSCEIEVIDLLSCSPDYRTNPCFKKRRATTVHPEIIDLTNS
PIFV

Transcript Sequence

Transcript ID

VIT_06s0004g07840.t01
Transcript Infomation

cdna chromosome:12X:6:8609416:8611495:-1 gene:VIT_06s0004g07840 gene_biotype:protein_coding transcript_biotype:protein_coding description:Structure-specific endonuclease subunit SLX1 homolog [Source:UniProtKB/TrEMBL;Acc:F6GUC5]
Sequence

AGAGAGGCAGAGTGATGACGAAGAGAAAGGGGCGATCAGAAATCTCAGAAGAAACCCTAA
ATTCAGAGGAGAAAGGCGATGATTTCTTTGCCTGCTATCTACTGGCTTCCCTCAGCCCCA
GGCACAAAGGCCACTCCTATATCGGATTTACAGTTAATCCAAGGCGTAGAATCAGGCAAC
ACAACGGTGAAATAACGTGTGGAGCATGGAAAACCAAGAGGAAGCGCCCTTGGGAAATGG
TTCTATGTATTTATGGTTTCCCAACAAATGTTTCTGCTCTTCAGTTTGAATGGGCGTGGC
AGCACCCAACAGAGTCACTAGCCGTCAGAAAGGCAGCTGCAGGTTTCAAATCCCTTTCTG
GGATTGCCAATAAGATCAAACTCGCGTACACCATGTTCACCCTCCCAGCATGGCAGAGCT
TGAACCTCACAGTGAACTTTTTCTCAACAAAGTATACAAAGCATTCTGCTGGTTGCCCAA
TCTTGCCAGAGCACATGAGGGTGCAAGTTTCTCCCATGGATGAGCTTCCATGCTATTCAG
GAAGTGATCAGAGTTTCTTTGACAATGCCAGGGGCGATGAGAAAGAAGAACTTGGTGAAA
GAGGCAGCAGCAGTGATGGATTTGATCAAGTAATAGCCCATGAGGAGACTGCTCTGGAGC
AGTTTGGATGGATTGAAGAACATGGCTTGAGACAACCAGGGGACTCACCCTCTCCAGAAG
TAGTTCATTGTTCTGGAAAGACCCAAGAAAACGCCATGAGACAACCTGCAGACTTGTCCA
CTTCAAAAGATGAACATAGATCGCCATTTTGTCTCATTGATTCCCCAGTGAGAACATCTT
CTCATAGCACAGAAGGAACTCTTGATAAAGATACCTCTGGATTGAGCAAAGAAAATAAAG
TTCTGACAATGAAACAATTGCCAGCTACAGTAGCCGCTGATAGAGGTAAACCAAAAATCA
GCAGTCTCGATACCTCTTGTGAAATTGAGGTTATAGATCTATTGAGCTGCTCACCTGACT
ACAGAACTAACCCATGTTTCAAGAAGAGAAGAGCTACTACTGTCCATCCTGAGATCATTG
ACTTGACCAATTCACCCATTTTTGTGTAGCTGTAGTA