Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_06s0004g06750.t01
CDS Infomation

cds chromosome:12X:6:7450402:7456668:-1 gene:VIT_06s0004g06750 gene_biotype:protein_coding transcript_biotype:protein_coding description:RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:D7SJW4]
Sequence

ATGACGGCGCCGGCGTTGGAATCCATTCTTCGCTCCTTATCGGAACTCTGCCTTTCCGAC
GATAACTTCGCTTGGGAGAACCCTAGGCGCTTCTCTGCCTACGCCAATCGCCTCCAGCTT
GTTCTGAACCAGTTCCTGCGATCGTCGTCGCCGGAGGCTTTGTCTCCGTCCGTACAAACT
ACCTTGAGAGGGGTTTCTGGTGATCTGTCGAAGGCGGTTGAGGCGGTGTCAGTGTATAGG
AACAGAAGCAAAATCTTCGTCCTCATCAACTGTCAGTCTCTGTGCGCGTCCCTTCAGGAG
CACACCGTAGCAATCGGAGGATGGTTGGCTCTGCTGGAGTCGACTCTGCCGGAGGGTTCA
GATCTTCGCAAGAAGGTCGCCGATCTCTCCCAGGATATGAAACAAGCGCAGTTCAGAGTT
TCGGAGAACGAAGAGAGAGTGCACTGTACACTGCAGAAGGAGGGACAAGGCAGGCCGACC
AGCAAAGCAGTGCAAAGTGCCATTGTCATGGATTTAGCTCGAGCTCTCGGGATCGAGGCA
GATGATCATGCAAAGTTGTCGGAGCAGGTCAAGCTCCTGAAGACGGACTTGGCGAGCTCG
AATCCACTTGCAGAAAGGCGGGTTTTGATGTCCCTGGAGAGAATTATGGATAACTGGACT
GTTCATCCAGCCACTTCAGAGTGGAACTTGGATTTTGATTTTGAAGAGGATGCCCAAATG
TCGCCCTTTAAGAATTTTCTATGCCCATTGACAAAGGAAGTGATGAAGGATCCGGTGGTG
TTGGAATCATCTCAGAATTATGAGCGGACTGCAATTGAGTACTGGTTCCGACGATGTATA
GAGGATGGTCGGGATCCAACTTGTCCTGTTACGGGGCAGGTGCTCAAGTCTACGGAGATG
AAACCAAACATCGGATTGGCTGGCGCAATTGAAGAGTGGGTTAGTAGGAATATTGAAATT
CAACTTAAGTCAGCAGTGCAGTGTCTTTCTGAGAATCAACCCCCAGTGGATTCTGTTGAA
TGGGTTTTGGATGTCATTTATAAGATATCAGAAGAGCACCCATCTAATAGATACAGAGTG
AGACATGCAGGTGTTGTTCTTCTTATGGTTAAAGTTCTTAGAAACTGTTCGAAGAGCATG
GGAACACATATGAGAGGCAAAGCTCTTATGACTTTGCTTAGCATGGCCAAGGATGAAGAA
AGCAAGAACATAATGCTTGGAGAGGGTATCACTAGATTGGCAATACATAGTCTTATTGGG
AGTTCAGAGAAAGAGAAAGAGTATGCTGTGAAGTTATTGCTAGAGTTCTCGAGGGATGAA
GCTTACTGCACAAAAATTGCATCAGAAAAAGGGGCACTAGTTCTTCTTTCGAGCATGGCA
GGAAATCTGGAGCATCCTGCCTTATCTAATCTAGCTGAAGAGGTGCTAAAACAGATGGAG
AGGGTGGAGGATAATGTTCAGCATTTGGCAGCAGCTGGAAGATTTGAACCCTTACTTAGC
CGGTTATGTGAAGGTACCGATGATGTTAAAATAGAGATGGCTCGTATTATGGGGAGGATG
ACCCTGACAAATAGCAGTAAGGAACAAATTGCAAGGAAATGTGCTAAAACCCTTGTTCAA
CTGTTATCTAAGCCAAAAGGAAGAGCTCCAAGCTTGCAAGCATTGTGTAATTTGTCAGTC
TTGGATGACAATGCAACCATTCTTGTTGATTCTGCTGTGATTCCAGCTCTTACAGATATT
CTTTTCGAAAATATGGATGATTCAGAGCTGAAGGAATTAGCTACATCAATAATTGCAAAC
ATAGTACAGCATCCAGGGCACTGGGAATATTCATCTATTGACAACAAAGGACATTCAATG
CAGTCAGAGACAACTGTGTTCCGTCTTTTGGGGCTTCTAGCTCATGTTTCCCCTCAATGT
CAAGTATCTGTTCTCCGGATCCTTTATGGAATTTCATCTTCACCCCAGGCTTCAGAGTCA
GTAGTTACCCATATAAAGTCTGGGGATGGCATCAAAACCATTATACCATTTCTAGAGCAC
CCAGAAGTTGAACATAGAATTTATGCTTTCAGGCTTACAAGGATACTCTCTGGAACGTTT
GGCGAAGATTTAGCTAATGAACTGAAACCTGCTGACAAGCTTCCCTTATTTAAAGAGAAA
CTACTTGACAACCAATCCACAGATGGTGAAAGATCCGATGCTGCATGCATACTGGCTAAC
CTTCCTCTCTCAGAAGATGAAGTAAAAACAGTCCTAGGTTCTAGTTTTGTGGGATGGACA
GTTGTTACTCTCAAAGATCGTCTCCGAAGCACCAATTGGAGAACTACTCGATCCTCCTCA
TGCTTGGAGGAAGGGCTTCTTGGCCTCCTACTCCACTTTACTCAGAGTCCTGATCCGCAA
ACTGTTAGTGTGGTCAAAGAGCATTCCCTCATGAATATTTTCCGTGAGCAGCTCAACTTC
CCTTTAAAACCAAGAGTTAAACAGCTAGCTGCCCTTGGATTGAAAAACTTGTCAGAGTCT
CGAAGGACACTAATCAGCACTGGGGACTTAGAAGTGCAACTTTCCCATGGCTTCTGCTCC
TCCTTGGTGTTCATGTGTGGGAAGAGGCCTCCAGAACTGCCTGTGTGCGCCATACACAAT
GTTTCATGTGAAGAAGATAATCAGTTTTGCCTGCTTAGAAGCAATTGCATTAAACCCTTG
GTAGATCTTCTAACAGATGAGGACACCAATGTTCAAATTGCTGCAGTGGAGGCACTTTCT
ACTCTCGTGATAGATACTTCCAACAACTTTAAGAGAGCTGTTGATGAGCTTGAACATCTG
GGTGTGGTTGAAGCTGCTATTACTCTTTTTACAGAAGTTCGCCCTGGTATTCTTCAAGAG
AGGTTACTTTGGATGATAGAGAGAATATTAAGAGTAGAGAGTGACATTAACCGGCACTCG
CTAAATCAGTCTCTGGTCAGGGCCTTGGTAGAAGCCTTTAAGCACGGCAATGCCAATGCA
AAGGGGTATGCCCAGGACGCTCTTACCAACCTAAAACAGTTATCAGGAGTCAGTGGAAAG
AACTCGAGTCAATCTCGTCCTCGGCGAGGAGAATCAAGCAGAGAAGTCGCCATCAGAACC
ATGGTCATGTTGAAGAAGATGAATGGCAGAGTCAGGTAA

Peptide Sequence

PEP ID

VIT_06s0004g06750.t01
PEP Infomation

pep chromosome:12X:6:7450402:7456668:-1 gene:VIT_06s0004g06750 transcript:VIT_06s0004g06750.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:D7SJW4]
Sequence

MTAPALESILRSLSELCLSDDNFAWENPRRFSAYANRLQLVLNQFLRSSSPEALSPSVQT
TLRGVSGDLSKAVEAVSVYRNRSKIFVLINCQSLCASLQEHTVAIGGWLALLESTLPEGS
DLRKKVADLSQDMKQAQFRVSENEERVHCTLQKEGQGRPTSKAVQSAIVMDLARALGIEA
DDHAKLSEQVKLLKTDLASSNPLAERRVLMSLERIMDNWTVHPATSEWNLDFDFEEDAQM
SPFKNFLCPLTKEVMKDPVVLESSQNYERTAIEYWFRRCIEDGRDPTCPVTGQVLKSTEM
KPNIGLAGAIEEWVSRNIEIQLKSAVQCLSENQPPVDSVEWVLDVIYKISEEHPSNRYRV
RHAGVVLLMVKVLRNCSKSMGTHMRGKALMTLLSMAKDEESKNIMLGEGITRLAIHSLIG
SSEKEKEYAVKLLLEFSRDEAYCTKIASEKGALVLLSSMAGNLEHPALSNLAEEVLKQME
RVEDNVQHLAAAGRFEPLLSRLCEGTDDVKIEMARIMGRMTLTNSSKEQIARKCAKTLVQ
LLSKPKGRAPSLQALCNLSVLDDNATILVDSAVIPALTDILFENMDDSELKELATSIIAN
IVQHPGHWEYSSIDNKGHSMQSETTVFRLLGLLAHVSPQCQVSVLRILYGISSSPQASES
VVTHIKSGDGIKTIIPFLEHPEVEHRIYAFRLTRILSGTFGEDLANELKPADKLPLFKEK
LLDNQSTDGERSDAACILANLPLSEDEVKTVLGSSFVGWTVVTLKDRLRSTNWRTTRSSS
CLEEGLLGLLLHFTQSPDPQTVSVVKEHSLMNIFREQLNFPLKPRVKQLAALGLKNLSES
RRTLISTGDLEVQLSHGFCSSLVFMCGKRPPELPVCAIHNVSCEEDNQFCLLRSNCIKPL
VDLLTDEDTNVQIAAVEALSTLVIDTSNNFKRAVDELEHLGVVEAAITLFTEVRPGILQE
RLLWMIERILRVESDINRHSLNQSLVRALVEAFKHGNANAKGYAQDALTNLKQLSGVSGK
NSSQSRPRRGESSREVAIRTMVMLKKMNGRVR

Transcript Sequence

Transcript ID

VIT_06s0004g06750.t01
Transcript Infomation

cdna chromosome:12X:6:7450402:7456668:-1 gene:VIT_06s0004g06750 gene_biotype:protein_coding transcript_biotype:protein_coding description:RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:D7SJW4]
Sequence

TTTTACTGCAGAATCTTACATACATGCCTTGTCTTGGCCAGATTCTTCCTCTTCTCGCCG
TGAAATGACGGCGCCGGCGTTGGAATCCATTCTTCGCTCCTTATCGGAACTCTGCCTTTC
CGACGATAACTTCGCTTGGGAGAACCCTAGGCGCTTCTCTGCCTACGCCAATCGCCTCCA
GCTTGTTCTGAACCAGTTCCTGCGATCGTCGTCGCCGGAGGCTTTGTCTCCGTCCGTACA
AACTACCTTGAGAGGGGTTTCTGGTGATCTGTCGAAGGCGGTTGAGGCGGTGTCAGTGTA
TAGGAACAGAAGCAAAATCTTCGTCCTCATCAACTGTCAGTCTCTGTGCGCGTCCCTTCA
GGAGCACACCGTAGCAATCGGAGGATGGTTGGCTCTGCTGGAGTCGACTCTGCCGGAGGG
TTCAGATCTTCGCAAGAAGGTCGCCGATCTCTCCCAGGATATGAAACAAGCGCAGTTCAG
AGTTTCGGAGAACGAAGAGAGAGTGCACTGTACACTGCAGAAGGAGGGACAAGGCAGGCC
GACCAGCAAAGCAGTGCAAAGTGCCATTGTCATGGATTTAGCTCGAGCTCTCGGGATCGA
GGCAGATGATCATGCAAAGTTGTCGGAGCAGGTCAAGCTCCTGAAGACGGACTTGGCGAG
CTCGAATCCACTTGCAGAAAGGCGGGTTTTGATGTCCCTGGAGAGAATTATGGATAACTG
GACTGTTCATCCAGCCACTTCAGAGTGGAACTTGGATTTTGATTTTGAAGAGGATGCCCA
AATGTCGCCCTTTAAGAATTTTCTATGCCCATTGACAAAGGAAGTGATGAAGGATCCGGT
GGTGTTGGAATCATCTCAGAATTATGAGCGGACTGCAATTGAGTACTGGTTCCGACGATG
TATAGAGGATGGTCGGGATCCAACTTGTCCTGTTACGGGGCAGGTGCTCAAGTCTACGGA
GATGAAACCAAACATCGGATTGGCTGGCGCAATTGAAGAGTGGGTTAGTAGGAATATTGA
AATTCAACTTAAGTCAGCAGTGCAGTGTCTTTCTGAGAATCAACCCCCAGTGGATTCTGT
TGAATGGGTTTTGGATGTCATTTATAAGATATCAGAAGAGCACCCATCTAATAGATACAG
AGTGAGACATGCAGGTGTTGTTCTTCTTATGGTTAAAGTTCTTAGAAACTGTTCGAAGAG
CATGGGAACACATATGAGAGGCAAAGCTCTTATGACTTTGCTTAGCATGGCCAAGGATGA
AGAAAGCAAGAACATAATGCTTGGAGAGGGTATCACTAGATTGGCAATACATAGTCTTAT
TGGGAGTTCAGAGAAAGAGAAAGAGTATGCTGTGAAGTTATTGCTAGAGTTCTCGAGGGA
TGAAGCTTACTGCACAAAAATTGCATCAGAAAAAGGGGCACTAGTTCTTCTTTCGAGCAT
GGCAGGAAATCTGGAGCATCCTGCCTTATCTAATCTAGCTGAAGAGGTGCTAAAACAGAT
GGAGAGGGTGGAGGATAATGTTCAGCATTTGGCAGCAGCTGGAAGATTTGAACCCTTACT
TAGCCGGTTATGTGAAGGTACCGATGATGTTAAAATAGAGATGGCTCGTATTATGGGGAG
GATGACCCTGACAAATAGCAGTAAGGAACAAATTGCAAGGAAATGTGCTAAAACCCTTGT
TCAACTGTTATCTAAGCCAAAAGGAAGAGCTCCAAGCTTGCAAGCATTGTGTAATTTGTC
AGTCTTGGATGACAATGCAACCATTCTTGTTGATTCTGCTGTGATTCCAGCTCTTACAGA
TATTCTTTTCGAAAATATGGATGATTCAGAGCTGAAGGAATTAGCTACATCAATAATTGC
AAACATAGTACAGCATCCAGGGCACTGGGAATATTCATCTATTGACAACAAAGGACATTC
AATGCAGTCAGAGACAACTGTGTTCCGTCTTTTGGGGCTTCTAGCTCATGTTTCCCCTCA
ATGTCAAGTATCTGTTCTCCGGATCCTTTATGGAATTTCATCTTCACCCCAGGCTTCAGA
GTCAGTAGTTACCCATATAAAGTCTGGGGATGGCATCAAAACCATTATACCATTTCTAGA
GCACCCAGAAGTTGAACATAGAATTTATGCTTTCAGGCTTACAAGGATACTCTCTGGAAC
GTTTGGCGAAGATTTAGCTAATGAACTGAAACCTGCTGACAAGCTTCCCTTATTTAAAGA
GAAACTACTTGACAACCAATCCACAGATGGTGAAAGATCCGATGCTGCATGCATACTGGC
TAACCTTCCTCTCTCAGAAGATGAAGTAAAAACAGTCCTAGGTTCTAGTTTTGTGGGATG
GACAGTTGTTACTCTCAAAGATCGTCTCCGAAGCACCAATTGGAGAACTACTCGATCCTC
CTCATGCTTGGAGGAAGGGCTTCTTGGCCTCCTACTCCACTTTACTCAGAGTCCTGATCC
GCAAACTGTTAGTGTGGTCAAAGAGCATTCCCTCATGAATATTTTCCGTGAGCAGCTCAA
CTTCCCTTTAAAACCAAGAGTTAAACAGCTAGCTGCCCTTGGATTGAAAAACTTGTCAGA
GTCTCGAAGGACACTAATCAGCACTGGGGACTTAGAAGTGCAACTTTCCCATGGCTTCTG
CTCCTCCTTGGTGTTCATGTGTGGGAAGAGGCCTCCAGAACTGCCTGTGTGCGCCATACA
CAATGTTTCATGTGAAGAAGATAATCAGTTTTGCCTGCTTAGAAGCAATTGCATTAAACC
CTTGGTAGATCTTCTAACAGATGAGGACACCAATGTTCAAATTGCTGCAGTGGAGGCACT
TTCTACTCTCGTGATAGATACTTCCAACAACTTTAAGAGAGCTGTTGATGAGCTTGAACA
TCTGGGTGTGGTTGAAGCTGCTATTACTCTTTTTACAGAAGTTCGCCCTGGTATTCTTCA
AGAGAGGTTACTTTGGATGATAGAGAGAATATTAAGAGTAGAGAGTGACATTAACCGGCA
CTCGCTAAATCAGTCTCTGGTCAGGGCCTTGGTAGAAGCCTTTAAGCACGGCAATGCCAA
TGCAAAGGGGTATGCCCAGGACGCTCTTACCAACCTAAAACAGTTATCAGGAGTCAGTGG
AAAGAACTCGAGTCAATCTCGTCCTCGGCGAGGAGAATCAAGCAGAGAAGTCGCCATCAG
AACCATGGTCATGTTGAAGAAGATGAATGGCAGAGTCAGGTAA