Plant GARDEN
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TOP > About the Species(Vitis vinifera ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Vitis vinifera

CDS Sequence

CDS ID

VIT_06s0004g04890.t01
CDS Infomation

cds chromosome:12X:6:5864828:5869317:-1 gene:VIT_06s0004g04890 gene_biotype:protein_coding transcript_biotype:protein_coding description:Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:F6GV04]
Sequence

ATGGGGTCGGACCCACCGTCGTCGAATATCGAGATTAAAATTCACCCTCGACGGCAAGAC
AACGTGGTTCATCCTGCGGTGCCCTCGCCGATGGGGATTCCGGCAGCCTCGGCACCGCCG
CGGCAGCAGCAGCATTTGTTTAGCGAGTTCAGGCCGTTCAAAAGGTGGTTTCCGTGGATG
GTGCCGACGTTTGTCGTGGCCAACATTGCCATGTTCTTGATCACTATGTTCATTAACAAT
TGTCCCAAGAACTCAGTCTCTTGCGTCGCTGATTTCTTGGGGAGGTTTTCGTTTCAGCCA
CTCAAGGAGAATCCACTACTCGGCCCGTCTTCGTCCACCCTAGAGAAGATGGGTGCTCTA
GAAGTGTCTAAGGTGGTCCATAGACATCAGGTTTGGCGTCTGATCTCTTGTATATGGCTA
CATGCTGGGGTGTTCCATGTACTTGCCAATATGTTGAGTCTTGTATTTATTGGAATTCGG
CTAGAGCAAGAATTTGGGTTTGTGAGAATTGGGTTGCTATATGTGGTATCTGGTTTTGGT
GGGAGTATGTTGTCATCACTTTTTATCCAATCAAGTATCTCTGTTGGTGCTTCTGGTGCA
CTCTTTGGTTTACTTGGAGGGATGCTTTCAGAACTCATCACAAATTGGACAATATATGCA
AATAAGTTTGCAGCATTATTGACTCTCATTCTCATCATCATAGTCAATCTAGCAGTGGGG
ATCCTCCCACATGTGGACAACTTTGCTCATATTGGAGGATTTGTTTCTGGCTTTCTTCTT
GGATTTGTGTTTTTGATTCGCCCCCAGTTTGGATGGGTTAGCCAAAGAAATGCTTCTCCT
GGACATATTGCACCTTCGGTCAAACCTAAACACAAGATGTATCAGTATGTACTGTGGGTT
ATGTCTCTGATACTTCTAACAGTTGGATTTACTGTTGGCATGGTTATGCTCCTCCGAGGG
GTTAGTGGGAATGACCAATGCTCCTGGTGCCATTACTTAAGCTGTGTCCCAACCTCTAAA
TGGAGCTGTAAATCGCAACAAGTCTATTGTGAGTCCACCACAATCGGAAACCAGCTGAAC
TTGACATGCCTGAGCAATGGGAGAAGCAACATTTATTTATTGCCTGATGACAACACTTCC
CAGGTTCAGCAGCTATGTTCTCAGCTTTGCAATTGA

Peptide Sequence

PEP ID

VIT_06s0004g04890.t01
PEP Infomation

pep chromosome:12X:6:5864828:5869317:-1 gene:VIT_06s0004g04890 transcript:VIT_06s0004g04890.t01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:F6GV04]
Sequence

MGSDPPSSNIEIKIHPRRQDNVVHPAVPSPMGIPAASAPPRQQQHLFSEFRPFKRWFPWM
VPTFVVANIAMFLITMFINNCPKNSVSCVADFLGRFSFQPLKENPLLGPSSSTLEKMGAL
EVSKVVHRHQVWRLISCIWLHAGVFHVLANMLSLVFIGIRLEQEFGFVRIGLLYVVSGFG
GSMLSSLFIQSSISVGASGALFGLLGGMLSELITNWTIYANKFAALLTLILIIIVNLAVG
ILPHVDNFAHIGGFVSGFLLGFVFLIRPQFGWVSQRNASPGHIAPSVKPKHKMYQYVLWV
MSLILLTVGFTVGMVMLLRGVSGNDQCSWCHYLSCVPTSKWSCKSQQVYCESTTIGNQLN
LTCLSNGRSNIYLLPDDNTSQVQQLCSQLCN

Transcript Sequence

Transcript ID

VIT_06s0004g04890.t01
Transcript Infomation

cdna chromosome:12X:6:5864828:5869317:-1 gene:VIT_06s0004g04890 gene_biotype:protein_coding transcript_biotype:protein_coding description:Rhomboid-like protein [Source:UniProtKB/TrEMBL;Acc:F6GV04]
Sequence

ACCGAATGGAGAAAAAATGAGTCGCGAATGCGAAAGAGGCAGCACATTCACAGTTGTTTG
AACCAACCTCAAAACCCTAATTCTGTCTCTAAAATCCTTTCTGTTTCTCTCTCTACAACC
CGATCTTCTGAATTCAGATCGGGAAAATGGAGGCTCTGAGGTAGAAGTCGTGATCCGAAT
TTGAGCGGTCACGATGGGGTCGGACCCACCGTCGTCGAATATCGAGATTAAAATTCACCC
TCGACGGCAAGACAACGTGGTTCATCCTGCGGTGCCCTCGCCGATGGGGATTCCGGCAGC
CTCGGCACCGCCGCGGCAGCAGCAGCATTTGTTTAGCGAGTTCAGGCCGTTCAAAAGGTG
GTTTCCGTGGATGGTGCCGACGTTTGTCGTGGCCAACATTGCCATGTTCTTGATCACTAT
GTTCATTAACAATTGTCCCAAGAACTCAGTCTCTTGCGTCGCTGATTTCTTGGGGAGGTT
TTCGTTTCAGCCACTCAAGGAGAATCCACTACTCGGCCCGTCTTCGTCCACCCTAGAGAA
GATGGGTGCTCTAGAAGTGTCTAAGGTGGTCCATAGACATCAGGTTTGGCGTCTGATCTC
TTGTATATGGCTACATGCTGGGGTGTTCCATGTACTTGCCAATATGTTGAGTCTTGTATT
TATTGGAATTCGGCTAGAGCAAGAATTTGGGTTTGTGAGAATTGGGTTGCTATATGTGGT
ATCTGGTTTTGGTGGGAGTATGTTGTCATCACTTTTTATCCAATCAAGTATCTCTGTTGG
TGCTTCTGGTGCACTCTTTGGTTTACTTGGAGGGATGCTTTCAGAACTCATCACAAATTG
GACAATATATGCAAATAAGTTTGCAGCATTATTGACTCTCATTCTCATCATCATAGTCAA
TCTAGCAGTGGGGATCCTCCCACATGTGGACAACTTTGCTCATATTGGAGGATTTGTTTC
TGGCTTTCTTCTTGGATTTGTGTTTTTGATTCGCCCCCAGTTTGGATGGGTTAGCCAAAG
AAATGCTTCTCCTGGACATATTGCACCTTCGGTCAAACCTAAACACAAGATGTATCAGTA
TGTACTGTGGGTTATGTCTCTGATACTTCTAACAGTTGGATTTACTGTTGGCATGGTTAT
GCTCCTCCGAGGGGTTAGTGGGAATGACCAATGCTCCTGGTGCCATTACTTAAGCTGTGT
CCCAACCTCTAAATGGAGCTGTAAATCGCAACAAGTCTATTGTGAGTCCACCACAATCGG
AAACCAGCTGAACTTGACATGCCTGAGCAATGGGAGAAGCAACATTTATTTATTGCCTGA
TGACAACACTTCCCAGGTTCAGCAGCTATGTTCTCAGCTTTGCAATTGATGTACTCTCAT
ATACATACAGGAAACGATAGAAGATTTCTTGAAGCATACGATTCAGTGCATATGATCCAT
CCGCACATCTGCAGAGAATGTCATCATATGTTTTTACCAAGTAATTGTTATAATCGTTAT
TTCTACAATCCATGTAATCTTCTTTCTGTTGTTGGTGGTTCTGTAGTTTCCAGGAGGGGG
GTATTTCTAATGCAATTCACTTTTATTGACCAGCAACTGCAGCTAAAATAGCTTGTGGCG
TAAACTTCTTTGGAAGATACAGAGCGGTTGAATTCTTGTTGCTGTTCTTTTTGTCACTCC
ACCTCTTTGAATTAGACATTCAATGTTTTCGCCTAAA